Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                       <---------TOE1(2)                                                                                       --------->SPL7                                                                                       <---------TOE2(2)                                                                                     --------->TOE2(2)                                        --------->ANAC58                             --------->TOE1(2)                                        <---------ANAC55(2)--------->YAB1          <---------------AtSPL8                                 <---------AtLEC2        <---------ARR11(3)        --------------->AtSPL8                               <---------YAB1            --------->ARR11(3)        <---------------AtSPL3                         <---------AHL20(2)     --------------->AGL15              --------------->AtSPL3  <---------YAB1       <---------AHL20(2)       =====================================================  <-----------GT1      --------->AHL20(2)   --------->GLK1(1) --------->YAB1<---------ICU4        --- -----AHL20(2)    <---------AHL20(2)    --------->ANAC58--------->YAB1      --------->YAB1    ------- ---->AHL20(2)   <---------AHL20(2)    <---------LBD16 ----------->GT1     <---------ATHB12  <------- ->TOE2(3)       --------->AHL20(2)----------->HVH21 ---------->DOF2 ----------->GT1 <---------SPL7   aaatatacttgttttaaaattaaatataaatttatgcatgacacggataaccttgtaaagataataacaacgagtaaatcatgaaatcgtacgttactat  12310200                                                                                               <-----                                                                                          --------->TOE1(2)                                                                                         --------->ANAC58                                                          <-------GAMYB                  <---------ANAC55(2)                                                         <---------DEAR3(2)              --------->ANAC55(1)                                                     =============MYC_MYB                --------->ANAC58                                                     --------->O2                        --------->ANAC46                                                     <---------O2                        --------->ANAC55(2)                                                     --------->TGA1a                    <-------TEIL      <---------AHL20(2)                          ------>ZmHOX2a(1)                <---------AHL20(2)    <---------AHL20(2)                         ------>ZmHOX2a(1)               --------->AHL20(2) <-- -------AHL20(2)                        ----------------------->TaNAC69(2)    --------->AHL20(1)<---- =========MADS_MADS                    <------MYB46(1)<-----------HVH21       <---------AHL20(1)<---- ------>AHL20(2)                       <------MYB83  <---------TGA1a <----------ID1--------->AHL20(2) -------->AGL15                        <---------MYB46(3)<---------MYB46(3)   --------->ARR11(3)----- --YAB1            --------->YAB1     <---------AtMYB61 <---------DEAR3(1)    <---------ARR11(3)-----   ttatattttaaaatgggcaaaacataacaaaaaaccatgggtggttttcctcctctcgtcggtcgaagacagagacaaaaaatatttaaatacgtaagaa  12310300   <---------ANAC58   <---------ANAC58 ----GLK1(2) -------ICU4               <---------YAB1 -----ARR11(3)             --------->ICU4 -------ARR10       <---------YAB1                     <----------DOF2       <---------ANAC58 ---->GLK1(2)     <---------At4g35610              ---------->ID1 ---------->DOF2           --------- ---->ARR11(3) <---------At4g35610       ----------->GT1       --------->YAB1<---------ANAC58--------   tctttgcttcttcttgatgctgatgagtgatgagtaatcgacagagttattttgtttcttttgtataataaaggagattgcgactctacaagagagggct  12310400                                                                           <-------TEIL                                                                      <---------HSFB2a(2)                                                                  <---------GLK1(2)                                                          <---------HSFB2a(1)                  --------->WOX13(1)                      --------->HSFC1(2)                <------ZmHOX2a(2)                         --------->HSFB2a(1)               <---------ARR11(3)                         <---------HSFC1(2)       <-----------GT1               --------->ARR11(3)                     --------->DEAR3(1)  --------->CCA1(2)       >>>>>>>>>>ABI3                             <------ZmHOX2a(2) <-------TEIL   <---------AHL20(2)    <---------ANAC58         --------->ZAT14     --------->ARR11(3)--------->GLK1(2)    <---------ANAC58<---------ATHB12       --------->CCA1(2)      <---------ARR14(2)        --------- >ZAT18>>>>>>>>>>FUS3--------->YAB1       <---------ARR11(3)      --------->ARR14(2)  =============== --->GT1     <---------YAB1  <---------ZAT14     <---------ARR11(3)--------->CCA1(2)  <----------DOF2   aatatagcatgcattaagatcaatcatacagtttacttaaacaagatttaagatcaccgaaggctcgagattcgagatacattattttctttttgtcttc  12310500                         --------->GLK1(1)                   ------->MYC2                   <-------PIF5                   <-------MYC2                   ------->PIF5                   <-----------HVH21                   <-------MYC3                   ------->MYC3                                                          XXXXXXXXXXXX                  --------->TGA1a                                              <------MYB46(1)                  <---------TGA1a                                              <------MYB83                  --------->ANAC46                                           <---------ANAC46                  --------->bZIP60(2)                                        <--------P <-----------GT1                  <---------O2                                             <---------MYB46(3) <------                  --------->O2                                             --------->MYB55(2) <------     ----------->GT1    <---------ARR11(3)            <------------CBF    --------->ALFIN1   --------    <---------TOE2(3)   --------->ARR11(3)           --------->ATHB12  --------->DAG2   --------->ZAT6 ->ID1          <---------ALFIN1            ----------->GT1           ---------->DOF2 <-----------GT1 ===========================bZIP_DOF    ------------>CBF       --------->AHL20(2)  <---------KAN4(2)   tatgttgatgttaatatcccacgtgagatatcaaatgtttagaacaatgtgaaaaccattggcaaaaaaatgaaaagtggttgggaattttcactatata  12310600                                                                         <---------MYB52(1)                                                                     -------->P       <---------WOX13(1)                                                             --------->ARR11(3)     --------->ATHB12                          --------->ANAC58                   --------->ARR14(2)    --------->ICU4 XXXXXXXX>MIR858  ------------>MYB.PH3(2)                    --------->ARR11(1)<-------TEIL ---ARR11(3)     <---------ZAT6       <---------ARR11(3)     <---------ARR14(2)--------->ZAT14   <--- ---AHL20(1)  --------->YAB1 *TSS     --------->GLK1(2)    ----------->ARR10   <---------ZAT14   <--- --->TBP ------------>CBF --------->ANAC58     ----------->GT1--------->CCA1(2)--------->ZAT18   ----   ttcgacttcgtagcaatgagagttagtcacccaaaaacaaaatctaatagagaaaaataagtagatatggcaacccttaagtgcattgattggcaattca  12310700                       --------->At4g35610                       <---------At4g35610                       <---------ZAT2           <------NtERF2  <---------LBD16           ------>NtERF2  <---------At4g35610          ------>NtERF2--------->ZAT2          --------->RAP2.6(2)      ------>ZmHOX2a(1)         <---------RAP2.6(2)  --------->ATERF1(1)         <---------DEAR3(1)  <---------ATERF1(1)        --------->ATERF1(1) ------>NtERF2                                    <---------ICU4        --------->RAP2.6(3)<---------RAP2.6(2)                              ------>ZmHOX2a(1)       <---------ATERF1(1)--------->At4g35610                   <---------ANAC46                    -   <---------------------WRI1------>NtERF2            <---------ALFIN1   <------ZmHOX2a(2)         <- ------At4g35610       ----------->RAV1(2)           --------->ZAT14    --------->ARR14(2)        <-- ------LBD16          <-----------RAV1(1)            <---------ZAT18    <---------ARR14(2)       ---- ----->At4g35610  --------->ARR11(3)     <-------TEIL<---------ZAT14 <---------ZAT18            -----   gcggaagcgaggcggccaaagatgctgctgcggcctccttaggctcatatacctctgcactctatgccctgtgcgatcctcatggcaaacccattttgcc  12310800              ------>ZmHOX2a(1)              --------->LBD16             <---------LBD16            ------>ZmHOX2a(2)           --------->GLK1(2)          <---------ARR11(3)          --------->AGP1          --------->ARR14(2)         <---------GLK1(1)         --------->GLK1(1)                                                 --------->ANAC58        ----------->ARR10                                               <---------ARR14(2) --------->ANAC58                                                       --------->ARR14(2) --------->ANAC58                    ---------->DOF2                 --------->HSFB2a(2) --------->ANAC46                --------->RAP2.6(2)                 <---------HSFB2a(2) -------->LBD16       --------->ANAC58           ---------->DOF2    <---------LBD16      --------->ZAT2 --------ALFIN1       --------->ANAC58--------->DAG2              <---------ANAC46       <---------ZAT2 ----NtERF2<------ZmHOX2a(2)   <---------At4g35610                <---------ANAC58      <---------TOE1(2) -->NtERF2<---------ARR14(2)   --------->At4g35610         <----------DOF2 --------->ANAC58       <-- ---->PCF2--------->ARR11(3)---------->DOF2  <---------MYB46(3)   <---------ANAC58     ------>ZmHOX2a(1)   cccacgaaatgagatcctggagaccagcaatacagccgaaaaagcagttgttaaagctgttctttatggctcgggaaacgcctatgctcctagcttaggc  12310900             ----------->GT1          ---------->DOF2       <------NtERF2      ------>NtERF2      <------NtERF2      <---------RAP2.6(3)     --------->RRTF1(2)     --------->ATERF1(2)     --------->ANAC58     --------->ANAC58     --------->RAP2.6(2)     <---------ATERF1(2)     --------->DREB2C(2)     --------->DEAR3(1)     --------->RAP2.3(3)     --------->RAP2.3(2)    --------->ATERF1(1)    --------->RAP2.3(1)    --------->SPL7                                                                                  <    --------->ERF1                                                                              -----   --------->ATERF1(1)                                         <---------ANAC46                 <----   <---------DREB2C(1)                                         <---------ANAC58                 -----   <---------ATERF1(1)                  --------->YAB1         <---------ANAC58             ---------   --------->DREB2C(1)              --------->ATHB12        --------->GLK1(1)              --------->ANAC55(2)   <------NtERF2                    --------->ATHB51        <---------GLK1(1)              <---------ANAC46   ------>NtERF2                   <---------YAB1          <---------ARR11(3)          <---------At4g35610  <---------ATERF1(1)           --------->ICU4             --------->ARR11(3)          --------->At4g35610  --------->DEAR3(1) <-------TEIL<---------ICU4   <---------ETT(2)                     --------->ZAT2 ----NtERF2 --------->DAG2   <-------TEIL         --------->ETT(2)     <-----------GT1 <---------ZAT2   ctcgcggccgccaaaaggtaatatacataaatacattattattgataacatgtctacataagatttcttgaaatttccatattacaaacagctccgtatt  12311000                                                 --------->AHL20(2)                                                 <---------AHL20(2)                                          <------ZmHOX2a(2)                                         <---------ARR11(3)                                         <---------ARR14(2)                                         --------->ARR14(2)     <---------AHL20(2)                  --------->AGP1                                    ---------- -------TEIL                       <-----------GT1                                      <---------MYB52(1) ---------->AtSPL8              ----------->GT1 --------->AHL20(1)                <---------HSFB2a(1) -----------AtSPL8          ---------->DOF2     <---------AHL20(1)                <---------HSFC1(2) ---------->AtSPL3      <---------At4g35610     --------->AHL20(2)                --------->HSFB2a(1) >LBD16  --------->ZAT6 --------->At4g35610     <---------AHL20(2)  <----------DOF2   <---------MYB46(3)   ggtacattttatctctaatggttatgtgctgaaagtgtaactagatccaatttattttggtagagtctgactttgaattttggaacggtcgttttgttaa  12311100  Previous    Next  AGI:  At4g23600.1    Description:  CORI3 (CORONATINE INDUCED 1, JASMONIC ACID RESPONSIVE 2); transaminase. similar to aminotransferase class I and II family protein [Arabidopsis thaliana] (TAIR:AT4G23590.1); similar to cystine lyase BOCL-3 [Brassica oleracea] (GB:AAO27362.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region, subdomain 1; (InterPro:IPR015421); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPr Range:  from: 12310629    to: 12313222    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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