Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <------ZmHOX2a(1)      --------->CCA1(2)   <---------TOE2(3)   <---------YAB1                                                                                ---- -------------->AGL15                                                                            <--- ------AHL20(2)                 --------->ATHB12                                     <---------TCP20 -ARR11(3)                   <---------AtLEC2                           <---------At4g35610     ----- -AHL20(1)          <---------ATHB12                        <------ZmHOX2a(1)        --------->PCF5 >AHL20(1)         --------->ANAC58                    --------->ATHB12 --------->At4g35610    ------ >ARR11(3)         --------->ANAC58                   <---------ZAT6<-----------HVH21--------->PCF2   ttcttaagataggaattagccaagcatttgtgcatgagtgactctcagcatgaagagtgataggaagaagtgtcagtagccttactggtcccattgccac  12284300      --------->ANAC58      --------->ANAC58 <---------At4g35610 --------->At4g35610                     --------->TOE2(3) <---------ZAT14                         --------->YAB1 --------->ZAT14                    --------->ZAT14 ----->AtMYB61                      <---------ZAT18          ---------->DOF2 ------ALFIN1                       --------->ZAT18       ----------->GT1        --------->TOE2(3) ---->MYB46(3)         --------->At4g35610           --------->AHL20(2)        <---------YAB1    ---- >NtERF2               <---------At4g35610        --------->WOX13(1)     <----------DOF2--------->MYB52(1)   cactgcagacccaatacattgctgaagctgcagataagtgcaatcttagtataaatcaaatagtaaagatagactctttatatcattaacaaactgcaaa  12284400                                                  XXXXXXXXXXXXXXXXXXXX>MIR397B                                                  XXXXXXXXXXXXXXXXXXXX>MIR397A                                                --------->ATHB12                                               <---------YAB1                                              --------->ARR11(3)                                      -------->HAHB4                 --------->YAB1       --------->YAB1          <---------YAB1              <---------ICU4   --------->CCA1(2)                 --------->ICU4              <---------ANAC58  --------->ARR11(3)      <----------DOF2     <---------ARR11(3) <---------ANAC58            <-------  <---------ARR11(3) <---------ARR11(3) <---------YAB1      --------->ATHB12          <---------ALFIN1 ----->YAB1    --------->GLK1(2)     <---------ATHB51      <---------YAB1            <---------ZAT14   catagatatatgatgagaatcaagatgtcttttctcttaattatgaaatatcattgaatgcatcattgagtatcaaactcactagtctccactgggacac  12284500                                     <-----------------AGL2                                     ================================================================                                     ----------------->AGL3                                     <-----------------AGL3                                 <<<<<<<<<CBP60g                                 <<<<<<<<<SARD1                                ------>MYB83                                ------>MYB46(1)                              ------->GAMYB                                                 ---------                              <---------MYB59                                               <--------                            ------>MYB83                                                    <--------HAHB4                            -------->P--------------->AGL15                                 ---------                            ------>MYB46(1)                                                <---------ATHB12                          --------->AtMYB61                                               ------>MYB46(1)                          <---------MYB111(1)            --------->YAB1                   ------>MYB83                         --------->MYB46(3)              --------->TOE2(3)               --------->WOX13(1)                         --------->DEAR3(2)  <---------TOE2(3)                        ------->TEIL<--    --------->YAB1 ----------->RAV1(2)<---------------AGL15 --------->MYB52(1)     --------->ANAC46 --ZAT18      <-----------GT1--------->MYB46(3)    --------------->AtSPL8          --------->ANAC55(2)   tcagaaaaataactttcaaccttctgaaccaaccaaatttctaaattaagaaaccagtaccataactgtaatacaataggtccctacgtaccaatcattt  12284600                    --------->DAG2               --------->LBD16              --------->ANAC55(2)              <---------ANAC55(2)              --------->ANAC58       -------->ATHB1              <---------ANAC46       --------->ATHB12              <---------HSFB2a(2)    --------->ATHB51              --------->ANAC58      <---------YAB1             <---------LBD16--------->ALFIN1                          <---------GLK1(1)    <---------HSFB2a(2)   <---------O2                               <---------ARR14(2)    --------->HSFB2a(2)   --------->O2                               --------->ARR14(2) --------->GLK1(2) ---------->DOF2  --------->ICU4          <---------At4g35610 =============MADS_MADS   --------->TGA1a                   --------->At4g35610 >ATHB12    --------->MYB52(1)   ------------>ATHB5       --------->ZAT18                           - -ICU4 =============================bZIP_DOF              <---------ZAT18                           - >YAB1 ---------->DOF2    <---------TGA1a          --------->ARR11(3)--------->ARR11(3)          <--- -------------AGL15=================bZIP_DOF      --------->REM1(1)  <---------ARR11(3)       -------   acaaatctagaaagttacggaaaaagtcaagtgggagaattattgaaaacttacatcttgtgagctagaagtatctccgattgcatttttcatcaagtcg  12284700            --------->ARR11(3)            <---------ARR11(3)                  ------------>CBF           --------->YAB1                   ------>ZmHOX2a(1)   <----------DOF2                          --------->LBD16       <---------AHL20(2)               -- -------->ANAC58                          ----------->RAV1(2)     --------->AHL20(2)             ---- -------->ANAC58      <---------AtLEC2<---------ARR11(3)         --------->AHL20(2)              ---- ---NtERF2<---------YAB1              --------->ARR11(3)         --------->YAB1         <---------MYB46(3) -->RAP2.6(3)  --------->GLK1(2)  ---------->DOF2  <------------CBF     <-----------RAV1(1)      ----   gcaagctttaatatgatattctttgcaagaatataagaaagctctcctgaaacaattggagatagaattaaaatatgtcgctaaaaatgtttgttatgca  12284800           <-----------GT1          --------->AHL20(2)          ----------->GT1    --------->YAB1                  <---------ANAC46    --------->TOE2(3)               <---------ANAC58   <---------ATHB12                 <---------ANAC58        <-----------GT1  ------>MYB46(1)               <---------ANAC58     <---------HSFB2a(2)                         ----  ------>MYB83         --------->ANAC58       <------------CBF                                   <--- ---------->CBF        --------->ANAC58     <---------AHL20(2)                                  ----- ----->ANAC58        ---------->DOF2<---------AtLEC2 ----------->GT1                    --------->ANAC58 ----->ANAC58 <----------DOF2   <---------ANAC58     --------->HSFB2a(2)                --------->ANAC46 ----->ANAC46 <---------DAG2<------------CBF--------->AHL20(2)         <------ZmHOX2a(1)--------->ANAC58   caccaatcttaattaactttttggaaagcaaattgtttgcttgtaaaaaattgttctgtaaataacatgttcaggatgacaaaacatagcacccaagtga  12284900       ------->TEIL    --------->ANAC58    --------->ANAC46    --------->ANAC55(2)    --------->ANAC55(1)          <---------YAB1    <---------ANAC55(2)          ----------->HVH21    --------->ANAC58        --------->ARR11(3)   --------------->AtSPL3   <---------ARR11(3)                                  --------->ZAT18 <-------TEIL    --------->HSFB2a(2)                                <---------ANAC55(2) ----------->AtSPL3   --------->YAB1  <-------GAMYB             <-----------HVH21       ---------->DOF2 ------------AtSPL8  <------ZmHOX2a(2)----------->GT1      --------->GLK1(1)    <---------ZAT18 ----->DOF2      <---------HSFB2a(2) ----------->GT1       <---------GLK1(1)   <------ZmHOX2a(1)   aagtacacgtaccaagtttctcgatcaaaagatttatgacagttaaaatgtgctcatttggaattccatcacatgagtttaggacactctcaaagacaga  12285000                                                     --------->ATHB12                                                    <---------YAB1                                        <---------MYB52(1)                      --------->HSFC1(2)                                        --------->DOF5.7(2)                     <---------HSFC1(2)                             <---------ALFIN1       --------->ICU4       <-----------HVH21                  <---------AHL20(2)   --------->TOE2(3)       --------->HSFC1(2)         <----------                  --------->YAB1      <---------ANAC55(2)     --------->ANAC58  --------->HSFB2a(1)                  --------->AHL20(2)  --------->ANAC55(2)     --------->ANAC58  <---------HSFB2a(1)     --------->ARR11(3)     <---------ZAT14   ------>ZmHOX2a(1)<---------HSFC1(2)    <----------DOF2   gcatacacatcttgctgcatttatattgtctccactggttacgttatcctcgtcttgattagacaagcttccctcggtcagaagtttctttttatcgatg  12285100                                                             <---------At4g35610                                                   --------->LBD16                                                   <---------LBD16                                                  <---------ANAC58                                                  <---------ANAC46                                                  <---------ANAC58                                              --------->ETT(2)                                     <-                          ----------->HVH21   <---------ETT(2)                                    ---                --------->AHL20(2)            <---------ANAC58               <---------YAB1     -----  <---------At4g35610     --------->WRKY12    <---------ANAC58       ---------->DOF2         <------- -GT1         <----------DOF2   <----------DOF2<---------SPL7--------->At4g35610    ---------->DOF2--   tggctactgatcaagtcttttaatatagttgacgctttggatgcaatgtcgtccgtggaagtcagaaggcctaaagcatatgaatggaaagttggaattc  12285200  Previous    Next  AGI:  At4g23540.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT2G34357.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23598.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Region of unknown function, NUC173 (InterPro:IPR012978) Range:  from: 12280423    to: 12284693    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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