Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ------->GAMYB                                                              --------->ANAC58                                             <------ZmHOX2a(1)--------->ANAC58                                           <---------TOE2(3)  --------->ANAC46                                  <---------AHL20(2)  --------->GLK1(2)<---------------AGL15                                 <---------AHL20(2)   --------->ARR14(2)                                 --------->AHL20(1)   --------->ARR14(3)         <---------AHL20(2)      --------->AHL20(2)   <---------ARR11(3)       <----------DOF2           <---------AHL20(1)   --------->ARR11(3) ---->MYB46(3)             --------->ANAC55(2)        <---------ARR14(3)    --------->ALFIN1 ------>ZmHOX2a(1)   aaacattttctttatttgatgacattctcacataatttaatagatgaggataacaaaatcttcaacgcaattgctcaaatgggggaagtctcatcctaca  12264200                                                                                     <---------ANAC58                                          <---------AHL20(2)                         --------------->AGL15                                         --------->AHL20(2)                          <---------ANAC46                           <-------GAMYB <---------AHL20(2)                          <---------ANAC58                          <---------MYB46(3)             <---------ATHB12        --------->GLK1(1)                        <---------At4g35610            --------->WOX13(1)        <---------GLK1(1)              ---------->DOF2            <---------AHL20(1)         <---------DAG2  -----------------        ---------->DOF2------------>AtMYB77    <-----------RAV1(1)  <----------DOF2 <----------------   atgctggtttcaaagtcaaagaagttagcggttgcatttccaattttttttgttgctcaatcaattgaaactttacccatagcatttccttgtaaggcat  12264300                                                                                   --------->DAG2                                                                                  ---------->DOF2                                                                               --------->YAB1                                                                           --------->ATHB12                                                                           -------->ATHB1                                                                           --------->ATHB51                      <---------YAB1                                      --------->ICU4                <----------DOF2                                           <---------AHL20(2)              ---------->ID1                                              <---------YAB1        <----             <-----------GT1                                              --------->AHL20(1)    <---- >AG    <---------TOE2(3)          ----------->GT1                        <---------ATHB51     ------ -AGL1<---------AHL20(2)---------->DOF2       --------->AHL20(2)        --------->YAB1        <------   tgttgtatttaagtttttctttttataaaagtatataagtttaaaaaaaaaaatcaaatcccttagaaatacaaaaattattgataaagttttttttttc  12264400                                                                              ------>ZmHOX2a(2)                                                                           --------->YAB1                                                                           --------->ATHB12                                                                          <---------ATHB12       -------->HAHB4                                                     --------->ICU4       --------->ATHB12                         --------->AHL20(2)    --------->LBD16      <---------ATHB12                          <---------AHL20(2)   --------->ANAC55(2) -----ANAC58                                    <---------AHL20(1)   --------->ANAC46 -----ANAC58                                    --------->AHL20(1)   <---------ANAC55(2)          --- ---->ID1                                      --------->YAB1       <---------LBD16<-----------GT1<-- -----GT1                     <---------YAB1  <---------YAB1      --------->ARR14(2)             ----   gtttctaaatgattcaaaactattccagtcttcttataagttagaagtattatattacttagactcaaattccgcaatgatcgaataacattctctaaaa  12264500             ------>ZmHOX2a(1)         <---------ARR11(1)         <---------ARR14(2)         --------->ARR14(2)        <---------CCA1(2)                  <---------YAB1        <---------ARR14(1)                ------------>CBF   <-----------GT1                <---------TOE2(3)                       <---------AHL20(2) ------>AHL20(1)          --------->YAB1 --------->YAB1                 ----------->TBP  <----------DOF2 -------AHL20(1)--------->YAB1  <---------AHL20(2)         <-----------RAV1(1) <---------GLK1(2)    *TSS ----->AHL20(2)----------->TBP --------->AHL20(2)         <---------TOE2(3)---------->DOF2  ---------   tatataaaccgtatcctataaaaaacaaacaaaattaatgctattacaattcgaactatttatgttgttcccttatataaagaaactcttcctttcatac  12264600                                                                     <---------MYB52(1)                                                                    <-------GAMYB                                                                   <---------DEAR3(2)                                                                   <---------MYB46(3)                                                                ------------>AtMYB77                                                                ------>NtERF2                                                               ------->GAMYB                                                               --------->DEAR3(1)                                               ----------->HVH21--------->ABI4(1)                                          ------->GAMYB        <---------ALFIN1                                          --------->RAP2.6(2)  --------->DREB2C(2)                                          --------->ANAC46    --------->MYB46(3)                    -                           <-----------GT1--------->DEAR3(1)  --------->DEAR3(2)                    -                     <---------YAB1      --------->MYB46(3)  <---------ATERF1(1)         ------>ZmHOX2a(1) >YAB1    --------->AHL20(2)   ------>ZmHOX2a(1)            <---------ALFIN1       ------>ZmHOX2a(1)-   caaaaaaaaaaaaaaaatccattttcatttctcctcttaaaaaaccgccatgacctctctctccaccgccggttaccttcttctccttctccttctccct  12264700                            <------NtERF2                          --------->RAP2.3(3)                          --------->RAP2.3(2)                          --------->DEAR3(1)                         --------->MYB46(3)                         --------->ATERF1(1)                         <------NtERF2                         --------->RAP2.6(1)                         --------->ERF1                         <---------ABI4(2)                         --------->DEAR3(2)                         --------->ORA47(2)                         --------->RAP2.3(1)                         --------->DEAR4(2)                        <---------ATERF1(1)                        <---------RAP2.3(1)                        <---------At4g35610                        --------->At4g35610                        --------->ZAT2                                                          -----               <----------DOF2                                                              <--------              <---------ANAC58                                                              ---------              <---------ANAC58                                                            <---------ARR14(2)             <------NtERF2--------->ATERF1(2)                                             --------->ARR14(2)            <---------MYB46(3)                                                          --------->At5g28300            ------>NtERF2--------->RRTF1(1)                          --------->YAB1   <------NtERF2            --------->ABI4(2)--------->DEAR3(1)                      <---------ICU4  ------>NtERF2         <---------MYB46(3)--------->LBD16                  ------>ZmHOX2a(2)       <---------ALFIN1         <---------DEAR3(2)------>NtERF2                   --------->GLK1(1)        --------->DEAR3(1)        <---------DEAR3(1)--------->RAP2.6(2)             <---------ARR11(3)       <------NtERF2<----     ----------->HVH21  --------->ABI4(2)                 --------->ARR11(3)       --------->ATERF1(1)  --------->TOE1(2)     ------>NtERF2                    --------->ZAT14   --------->DEAR3(1)------->GAMYB -------->ANAC58       --------->ARR14(2)      ---------->CDC5      <---------YAB1------>NtERF2------ -------->ANAC58       <---------ARR14(2)   --------->bZIP60(1)   <---------ICU4  <---------ATERF1(1) -------->ANAC46   <---------At4g35610      <---------bZIP60(1)   --------->YAB1 --------->ANAC46   <   ataagctacgacggtggcttcatcggagccgccgatgcagaacatgacctcagagccactgatctccataatcatcgccatcgtcgccaccgtaaccacc  12264800                                                                                ----------->GT1                                                                               <---------DEAR3(1)                                                                           <------ZmHOX2a(1)                                                                       <---------SPL7   <------NtERF2                                                      --------->DEAR3(1)  --------->LBD16                                                     <---------ANAC46 <---------ANAC46                                                    --------->RRTF1(1) ---->AtMYB61                                                        --------->ATERF1(1) -MYB55(2)                                                           --------->RAP2.3(1) >MYB46(3)                                                           <------NtERF2                 <- -----ALFIN1                                                        <---------RAP2.3(1)           --- --->MYB46(3)              <---------CCA1(2)       --------->ATHB12 ------>NtERF2                 <-- ---------LBD16   <---------ZAT14     <---------At4g35610          <---------DEAR3(1)          ------   atcgcggagaagagtttgagtactcagccatatcatgtagagcttactcagcctcattggacgagtttggcgccgtaggagacggtgtaacttcaaatac  12264900                                                                                 <------NtERF2                                                                                <---------MYB46(3)                                                                                ------>NtERF2                                                                               <---------DEAR3(1)             ------>NtERF2                                                     --------->ALFIN1            <---------O2                                                    <---------DEAR3(1)         ----------->HVH21                                                 --------->SPL7         --------->ANAC46                                                <---------SPL7            --        --------->HSFB2a(2)                       <------NtERF2          ----------->HVH21       <---        <---------HSFB2a(2)                      ------>NtERF2         <---------LBD16         ------  <---------ANAC46                               <---------MYB46(3)    <------NtERF2          <------  <---------ANAC58                              --------->ALFIN1      ------>NtERF2     --------->LBD16  <---------ANAC58<-----------HVH21             <---------DEAR3(1)    --------->LBD16 <---------LBD16 <------NtERF2<---------DEAR3(1) <---------ARR14(2)                   <------------------SPL14------- --------DEAR3(1)--------->bZIP60(1)        <---------ZAT14          ------------------>SPL14 ------- ------>At4g35610--------->ALFIN1--------->ARR14(2)                  --------->ANAC46--------->MYB52(1) -------At4g35610<---------bZIP60(1)<---------ANAC46                <---------LBD16----------->HVH21 ---->DOF2  <---------ANAC46     <---------MYB52(1)       <---------YAB1--------->DEAR3(1)--------->ARR14(2)   agcggcgtttcgcgacgcggtgtcacaacttagccgtttcgcagactacggtggctcattgttatttgttcccgccggacggtggctcaccggaaacttt  12265000       ------>MYB83       ------>MYB46(1)      --------->ANAC58      --------->ANAC58      --------->ANAC46     --------->MYB46(3)                                                                <----------DOF2 ----------->HVH21                                                                <---------AHL20(2) --------->RAV1(2)         <---------ALFIN1                                   <---------YAB1 --------GT1              --------->MYB46(3)   --------->ANAC46              <---------AHL20(1) --->DOF5.7(2)           ------>ZmHOX2a(1)    ------>ZmHOX2a(1)              --------->AHL20(2) ----DOF2          <---------DAG2       <---------MYB52(1)          <-----------GT1<-----------GT1 -->TOE1(3)        <----------DOF2     <-------GAMYB    --------->ANAC58     <---------AHL20(2)     < -->TOE2(3)   <-----------GT1   <---------MYB52(1)      --------->ANAC58    --------->YAB1          <   aacctgaccagccattttacgcttttcctccaccgtgatgctgttatcctcgcctctcaagtaagttttttttctccattataatttatctttcatttac  12265100  Previous    Next  AGI:  At4g23500.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G61490.1); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G61490.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO65921.1); similar to polygalacturonase-like protein [Fragaria x ananassa] (GB:AAP33475.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39664.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); co Range:  from: 12264600    to: 12267206    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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