Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ZAT14                                              <---------ICU4      <---------ZAT14                                             <---------YAB1  --------->AtMYB61                                     --------->LBD16  <---------ALFIN1                                     --------->ANAC46 --------->MYB46(3)                                    --------->ANAC58 <---------ATHB12                         --------->TOE2(3)       --------->ICU4 <---------MYB55(2)                       >>>>>>>>>RAP2.2       <---------ICU4 ----->MYB83                          <---------ALFIN1 --------->LBD16 ----->MYB46(1)               <---------YAB1           --------->ANAC58 ------->P    ------>ZmHOX2a(2)   ------>ZmHOX2a(2)   <---------LBD16   ccaaccactgcattgatccatattcaaaacttatgatcccccaatctaaacacatccccgcattaaccattattctgaatttcattccatttctacatag  12248600                                  <-------TEIL                              --------------->AtSPL3                              --------------->AtSPL8                  --------->ANAC55(2)          <---------ATHB12                                 <----                  --------->ANAC55(1)        --------->WOX13(1)                                 -----                  <---------ANAC55(2)      <---------YAB1                                 <---------ARR14(2)                  --------->ANAC46--------->SPL7                                 <---------ATHB12  --         --------->ATHB12<---------YAB1   --------->TOE2(3)                      <------ZmHOX2a(2)<--        --------->MYB46(3)    <---------------AtSPL8                       <-----------GT1--------->ARR14(2)       ------->TEIL     --------->TOE2(3)--------->YAB1                    --------->MYB52(1)--------   tttcaaatgaaccattgaacacataacattataacgtacaccatcatcaatctttcaaactaaaatatcaacaaaattaaccgatcaattcgaatccata  12248700        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      --------->ARR14(2)      --------->AGP1--------->YAB1                                                     <-------TEIL      <---------ARR14(2)                                                              <------ZmHOX2a(2)      <---------AGP1<---------ICU4                                                   <---------ARR14(2)      <---------ARR11(3)                                                             --------->ARR14(2)      --------->ARR11(3)   --------->YAB1                                    <------NtERF2      <-----------ARR10  <---------YAB1           --------->CCA1(2)        <---------ANAC46 -----ICU4         --------->ICU4            ---------->DOF2               <---------ANAC58 ---->YAB1  --------->HSFB2a(2)        --------->MYB52(1)                  <---------ANAC58<---------ARR14(2) ------->YAB1      <---------YAB1     ------->GAMYB                       <---------LBD16  --------->ARR14(2) -------YAB1<---------HSFB2a(2)      --------->MYB46(3)         ----------->GT1      --------->AGP1 ->TOE2(3)-------->P-------->HAHB4   <---------MYB52(2)      <---------GLK1(2) <------ZmHOX2a(2)   atcatacagatctaccagaaaatgattatgcataattcaacgaacgagaaagagatgagattagaatcgtgaaaatggcggatcacagatccatatatga  12248800                                                         ------>ZmHOX2a(2)                                                        --------->GLK1(1)                                                        <---------GLK1(1)                                                        <------ZmHOX2a(2)                                                       --------->ARR14(2)                                                       --------->ARR11(3)                                                  <---------LBD16                               -----                                                  <-----------RAV1(2)                          <-----                                               --------->At4g35610                          ---------                                               <---------At4g35610                          <--------                                          <---------ANAC58                        --------->AHL20(2)                         <---------ZAT6   <---------ANAC58                       --------->ARR11(3)                ------->TEIL       <---------At4g35610 <---------ARR11(3)        <---------ARR11(3)               <---------ARR14(2)  --------->At4g35610 <---------ARR14(2)        <---------AHL20(1)            >>>>>>>>>TBF1----------->GT1  --------------------->WRI1             --------->AHL20(1)<-   aattagacggagaagaagaaccttgtactgtgaattcagctcttccttgagctcagggatctctcccttcttcgtagtcgaaaaatatttagaatcatga  12248900                                                                                     --------->DAG2                                                                               ----------->GT1                                                                             <------------CBF                                                     ----------->HVH21   --------->ANAC46                                          --------->LBD16                --------->ANAC55(1) ---->RAP2.6(3)            <---------ALFIN1      <------ZmHOX2a(2)       --------->ANAC58           < ----WRKY18(1)        --------->AtMYB61   <---------HSFB2a(2)            --------->ANAC55(2)      <-- >YAB1                ------->GAMYB    ------>ZmHOX2a(1)    *TSS         <---------ANAC55(2)    <---- -ICU4  <-----------GT1  <---------ALFIN1 --------->HSFB2a(2)     ---------->DOF2   ---------->DOF2-- --------At4g35610   --------->MYB46(3)=================HOX2a_HOX2a      --------->ANAC58      ------   ccgctcattttctcccttcttcaacctccacacttcttctcctccgagacgatcagtgacaagagacacaaagacacgaaattgcaaaaagtaataggtc  12249000                                                                                    <---------At4g35610                                                                                    <---------ZAT2                                                                                    <-------GAMYB                                                                                    --------->At4g35610                                                                                    --------->ZAT2                                                                                 *TSS   -------------                                                                                ------------>AtMYB77                                                                                ------->GAMYB                                                                               --------->ANAC58                                                            --------->bZIP60(2)--------->ANAC46                                    -------->ATHB1          <---------TGA1a    --------->ANAC58                                    --------->ATHB12        --------->TGA1a  <---------DOF5.7(2)                                    --------->ATHB51        <---------O2    <---------WRKY12  <------   --------->AHL20(2)              <---------YAB1           ============================MYC_MYB -------GAMYB              --------->ZAT6                   =================================MYC_MYB ----NtERF2              <-----------GT1                    ============================MYC_MYB -----DEAR3(1)    <---------At5g28300<------------CBF       --------->O2    <---------WRKY45 <------- --------->GT1   <-----------GT1 <---------ZAT6      <------------CBF       <---------WRKY38(1)    -- --->ALFIN1   <---------ICU4--------->TOE2(3)   <---------TOE2(3)          --------->WRKY18(1)-------   ggggttaaaataaaactaattacagtttaaccctagtattattgatatttgacgaaattgcctcgtgacttcgtctagtcaacgccagttgccatccagg  12249100 ---->AGL1                                  --------->At4g35610 ---LBD16                                   --------->CCA1(2) ----RAV1(2) --------->GLK1(2)       <---------YAB1          <-------MYC3                          -- ------->ALFIN1                    --------->CCA1(2)         ------->MYC3              <---------YAB1 -->LBD16>>>>>>>>>TBF1          --------->ETT(2) <---------bZIP60(1)          <----------DOF2    <---   ggaggggagaagaagaatttgtattctcaagttgtcgatatgagagagatgaagtcagaaacacgtttgtgagagaacagcttttagatgtgattgtgga  12249200                                                                                      <---------ANAC58                                                                                     ------>ZmHOX2a(2)                                                                                     ================                                                                                    <------ZmHOX2a(2)             <----------DOF2                                                        =================             <---------DAG2                                                        --------->ARR11(3)       ---------->DOF2              ------>ZmHOX2a(1)                              <---------ARR14(2)  --------->GLK1(2)                --------->TOE1(3)                               <---------GLK1(2) <---------ARR14(2)                --------->TOE2(3)      <---------WRKY18(1)      --------->ARR14(2) --------->ARR14(2)               ------>ZmHOX2a(2)      ----------->HVH21         --------->AGP1 --- <---------GLK1(2)    ----------->ARR10                 <----------DOF2            <---------ARR11(3) --------->ARR10  <---------HSFB2a(2)                  <---------ANAC58  <------NtERF2<---------ANAC58 ---ZmHOX2a(2)    --------->HSFB2a(2) ---------->DOF2  <---------ANAC58<---------DEAR3(1)         ---   tcagattctcaaagacttttcgcgaagagtctctgatccttaaatcgcttctctctcgcttgacctcatttcgtcgtcgaaatcagatccttgtgaaaat  12249300                                              --------->ATHB12              <---------HSFB2a(2)                                          <---------MYB52(1)             --------->ARR14(2)                                         --------->LBD16                 <---------ARR14(2)                                        <---------ANAC58           --------->ANAC46                                        <---------ANAC58           ----------->RAV1(1)         --------->CCA1(2)              --------->ANAC55(2)       --------->MYB46(3)        --------->ARR14(2)          <---------HSFB2a(1)      ------>ZmHOX2a(2)        <---------ARR14(2)        --------->ARR11(3)        <------ZmHOX2a(2)       <------ZmHOX2a(1)--------->At4g35610  --------->ICU4--------->ARR11(3) =============HOX2a_HOX2a         <---------ARR11(3)       <---------ARR11(3) =============HOX2a_HOX2a  <-------TEIL <---------ANAC46   <-----------ARR10--------->HSFB2a(2) -------------->AGL1    <---------ZAT2  <---------ANAC55(2)--------->ARR14(2)            <---------ANAC46 -------------->AG      <---------At4g35610  <---------YAB1<---------ARR14(2)      --------->ARR14(2)   gccgaaacaggatatggagaagatggagcttcgtaagaacttccgtaatgtttggcataccgatcttacccacagtatccagaacgatactccttgtaat  12249400                                           --------->MYB111(2)                                         <---------ANAC58                                         <---------ANAC58                                  <------MYB46(1)                                  <------MYB83 --------->ATHB12                                 <---------AtMYB61                                <---------WOX13(1)                                       <----------DOF2                             <------MYB83<-------GAMYB ------>ZmHOX2a(2)           <---------ANAC58                             <------MYB46(1)<-------GAMYB                     <---------MYB46(3)                           <--------P   <---------MYB46(3)                    <-----------RAV1(1)<---                          <---------ANAC46 --------->MYB55(2)             <---------TOE2(2)  --------          <----------DOF2 <-------GAMYB<---------AtMYB61  <---------GLK1(1) <---------GLK1(2)<-------          <---------DAG2 <---------MYB46(3)<---------MYB46(3)   <-----------RAV1(1)<---------ANAC58<-   ttctcactctctctttttgaaatttgtgggttggattggttttggttgttgatttgatcgatttctgtgttgttcgcagattgttgcttcgcgttgtggt  12249500  Previous    Next  AGI:  At4g23460.1    Description:  beta-adaptin, putative. similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G11380.1); similar to hypothetical protein OsJ_010430 [Oryza sativa (japonica cultivar-group)] (GB:EAZ26947.1); similar to Adapter-related protein complex 1 beta 1 subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96009.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65935.1); contains InterPro domain Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain; (InterPro:IPR008152); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Clathrin/coatomer adaptor, Range:  from: 12243681    to: 12248960    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g23470.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G63830.1); similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G63830.2); similar to Os03g0123600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048806.1); similar to unknown [Populus trichocarpa] (GB:ABK94210.1); contains InterPro domain Protein of unknown function Cys-rich (InterPro:IPR006461) Range:  from: 12249081    to: 12251406    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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