Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------At5g28300                                                                      <---------ICU4                                                                      --------->ATHB12                                                                   <---------ICU4                                                                   --------->YAB1            <-------TEIL                                          --------->ICU4           --------->CCA1(2)                                      <---------ATHB12          --------->ARR11(3)   <----------DOF2               --------->ANAC58          --------->ARR11(1) --------->HSFC1(2)   --------->At4g35610<---------YAB1               ---      ---------->DOF2        <---------HSFC1(2)   <---------At4g35610--------->ICU4               ---   <-----------HVH21  <---------ANAC46<---------GLK1(1)      --------->ANAC58<-------GAMYB      <---- ------>ARR11(3)<---------GLK1(2)     --------->GLK1(1)   <---------GLK1(2)<---------TOE2(3)<--------   gaacttgtcaaagatacagaattggcgaagaagctttgggatttcagcactaagcttactgattcgcaatgatgattaccgttgcagtagatagttgttc  12228600                                                 --------->ATHB12     <----------DOF2                            <---------YAB1                 <---------ARR14(2)    --------->TOE1(3)                           --------->ICU4                 --------->GLK1(2)    --------->TOE2(3)                          <----------DOF2                 --------->ARR14(2) ------>ANAC46                          <-----------GT1            ----------->GT1 ------>LBD16                        <---------ICU4            --------->AHL20(1)       <---------ICU4 -----LBD16                        <---------ANAC55(2)         --------->AHL20(2)      --------->ICU4 -MYB46(3)<----------DOF2          --------->ANAC55(2)         <---------AHL20(2)      <---------ATHB12   agggaacctttactttcgatgtctctattgtgacaatacttatttcagtctttattgatacaaaataaaatgtaaaaaacaaatctgaaatcatttccat  12228700                                                  <---------ANAC58                                                  <---------ANAC55(2)                                                  --------->ANAC55(2)                                                  <---------ANAC58                                                <-----------GT1                             <--------                                             <---------ZAT6                              --------->ZAT18                     <-----------GT1         ----------->GT1                             <---------ZAT14                ----------->GT1          ---------->DOF2          <---------WOX13(1)     --------->ZAT14          ---------->DOF2         --------->TOE2(3)            <---------YAB1            <---------ZAT18   ttcaattctgcaaaaagatggtttatccaatttcagcctaaacaaaagtgttacttatctgttttctcattgactcaaaacagttgtctagtgaactaac  12228800                                                                                             <------ZmHOX2a(1)                                  ----------->GT1                                          <---------TOE2(3)                             ---------->DOF2                                            <---------AHL20(2)                        ------>MYB46(1)          <---------YAB1                    ----------------->AGL3                        ------>MYB83       --------->ARR11(3)                      ==================                        --------->MYB52(1) <---------ARR11(3)                     <---------At4g35610                --------->ANAC58 <---------ARR11(3)                             <---------PCF2 -MYB59         --------->ANAC58 --------->ARR11(3)                           <---------MYB46(3)   --   tcgtagacataagtaagtaagaaaccaaacagaaagagcttaaaacatcttctgattttggagttaactcatgttattggtgggagctattttaaggaca  12228900                       ----------->GT1                  ---------->DOF2         <----------DOF2                <--------HAHB4                          <---------ALFIN1         --------------->AGL15          <---------ICU4              <---------ALFIN1         ------>ZmHOX2a(1)              --------->ATHB12 <-------TEIL --------->ANAC46         <---------------AGL15         <---------ATHB12  --------->ZAT18     --------->TOE2(3)        --------->TOE2(3)     <---------ICU4          --------->At4g35610    --------->TOE1(3) ========================MADS_MADS   --------->ANAC46 <---------At4g35610    --------->AtMYB61 --------->GT1---------->DOF2 <---------AHL20(2)<----------DOF2   <-----------GT1    --------->O2 <--   tttgttaaatcctttaaaaagaaagttgttaataaatccccatcatttgactttggagatgcactattctacacttcaacctcaacctcgtgagacatga  12229000                                                                                   <---------ATHB12                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                                  --------->ANAC46               --------->YAB1                          --------->YAB1       ----------->HVH21        --------->DAG2                            --------->AHL20(2)      <---------ANAC58       ---------->DOF2                            <---------AHL20(2)      <---------ANAC58   <---------TOE2(3)                       ----------->GT1           --------->ARR14(2)           ---  ---------->DOF2       <-----------HVH21 --------->DAG2             <---------ARR14(2)    ---------- ----ZmHOX2a(1)<-----------GT1      *TSS ---------->DOF2      ---------->DOF2<---------WRKY18(1)  ---   ggattaaagtaaagtaatcacatttctgtcacatatgaacaaataaagttatttaaatcagaataaaagcgaaatcgcttgaccactcaagaagagaaaa  12229100                                                                   --------->DAG2                                                      <---------ZAT2                         ------>ZmHOX2a(2)                                                      --------->ZAT2 --------->At4g35610  XXXXXXXXXXX                                                      --------->At4g35610                XXXXXXXXXXXX ------>ANAC58                     <----------DOF2    <---------At4g35610    --------->ARR11(3)------ ->GT1                  --------->ATHB12             ----------->RAV1(1) ---------->DOF2 XXXXXXXXXXXX ------>ANAC58         <---------YAB1   ------>ZmHOX2a(1)         ---------->DOF2----------->GT1   acgctaacaagtcccatagtttgtgtttattggacttctttcctctcatcttctccagcagaaacaaaaaaagctgaaagatgtggttttttggatcgaa  12229200         --------->ARR14(2)         <---------GLK1(2)         <---------ARR14(2)    --------->At4g35610           <------ZmHOX2a(1)   <---------ARR14(2)       --------->ZAT14   --------->GLK1(2)        <---------ZAT14         --------->ATHB12               <---------GLK1(2) XXXXXXXXX>MIR159C         ------->GAMYB        <---------ANAC46                 <---------TOE1(2) XXXXXXXX>MIR159A        --------->At4g35610------->MYC3                         <---------TOE2(2)<-- ---->DOF2               <---------At4g35610<-------MYC3----------->HVH21       <-----------RAV1(2) XXXXXXXX>MIR159B      <---------WRKY12  <---------ALFIN1                   <-----------HVH21  ------   aggagcatctggattctcgtctcgttcaactgcagaggaagtcacacatggtgttgatgggactggtctcactgccatagtcacaggttttcttctatca  12229300                   ========================bZIP_DOF                   <---------O2                                  <---------ARR11(3)                   --------->O2                                --------->LBD16      --------->ANAC58          ---------->DOF2               --------->HSFB2a(2)      --------->ANAC46    <--------P                          <---------HSFB2a(2)      --------->ANAC58   <-------GAMYB                        --------->HSFC1(1) <----------DOF2   ==============MYC_MYB                <---------ICU4      ------>ZmHOX2a(1) ============================bZIP_DOF       <----------DOF2   <---------HSFC1(1)  <---------GLK1(2) -------ALFIN1     <---------TGA1a   <---------REM1(1) <---------YAB1    ---------->ID1 --->YAB1       ----------->HVH21<---------TOE2(3)   --------->YAB1 <----------DOF2               ---   acactttcatgccattttgcgacatggggttgtctaaagttgtagactttttttcttataatttccagaacttttgtcctctctgattctgtcttcgaat  12229400                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                           --------->ZAT6                                                                                        <---------WRKY45                                                                                        <---------WRKY38(1)                                                                                        <---------WRKY12                                                                                       <<<<<<<<<<WRKY6                                                                                       --------->WRKY18(1)          ----------->GT1                                                              <<<<<<<<<<WRKY11      <---------ARR14(2)                                       --------->YAB1         <--------ZAP1      --------->ARR11(3)                                      <---------YAB1          <-----------HVH21     <---------CCA1(2)      <---------YAB1           <---------TOE1(3)              --------->MYB59 ------>ATHB12            <----------DOF2            <---------TOE2(3)       <----------DOF2   ------   tgatttcatatctagtaaaaagacttgacttttattgtttagacaattggaatttaaggtttttatcatcagggtctgtctttgattcggtcaactctaa  12229500  Previous    Next  AGI:  At4g23420.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G23430.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62836.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 12225617    to: 12228728    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g23430.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G23420.2); similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G23420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62836.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 12229036    to: 12231668    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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