Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------YAB1                                                            <---------YAB1                                                         <---------YAB1                                                         <---------AHL20(2)                                                        <---------AHL20(2)                                                      <---------YAB1                                                    --------->AHL20(2)                      <--------                                                    <---------ICU4               <---------WRKY12                                                    <--------HAHB4            <------MYB83  <--------             <---------ARR14(2)                     <---------AHL20(2)        <------MYB46(1)             --------->ARR14(2)                     --------->YAB1           --------->MYB59<--------    <---------YAB1                                  -------->ATHB1          <--------P <---------MYB46(3) --------AHL20(2)                                   --------->ATHB51    <---------ANAC46   <------NtERF2 -----ARR11(3)                                     --------->ICU4      <------NtERF2  <---------DEAR3(1) ---->AHL20(1)                     <----------DOF2 <---------ATHB51  --------->ANAC46 --------->ALFIN1 -----AHL20(1) <-------TEIL   ---------->ID1    --------->ICU4<---------AHL20(2)--------->WRKY18(1) -GT1--------->ATHB12       <---------MYB46(3)----------->RAV1(1)   <---------LBD16   <---------AtMYB61   ttttttttcattgaatatacgtttataggtttgttctcttttctaatgcaacaattatttttattattttcgcggcatgtaggtcaaggtggtggcatgg  12225200                                                                              -------->ATHB1                                                                              --------->ATHB51                                                                              <---------AHL20(2)                                                                              --------->ATHB12                                                                              <---------ICU4                               <---------TOE2(3)                              -------->HAHB4                               <---------TOE1(3)                             --------->ICU4                           --------->YAB1                                    <---------ATHB51                          <---------YAB1                                     <---------YAB1                   <---------AHL20(1)                                      --------->YAB1                   --------->AHL20(1)                                     <---------AHL20(2)    ------>ZmHOX2a(2)    <---------TOE2(3)                                --------->AHL20(2)   <------ZmHOX2a(2)--------->AHL20(2)                  <---------DAG2    <---------YAB1 -ANAC58           <---------ARR11(3)                   <----------DOF2--------->AHL20(1) -ANAC58           --------->ARR11(3)      --------->ARR11(3)          <---------AHL20(1) -ANAC46     <---------ZAT6--------->TOE2(3) <-----------GT1           <---------ARR11(3)          --   gagagatcggtattagtgaaaaatatttatgttaatgttttcgaatatcacggttcaactttttggtttccaatatataattattgattttgaacagaac  12225300                                    <---------AHL20(2)        <-----------ARR10          --------->YAB1            --------->AHL20(2)        --------->ARR14(2)         <---------YAB1            --------->AHL20(2)         <---------ARR11(3)       --------->YAB1      <---------HSFB2a(2)                --------->GLK1(2)   --------->AHL20(2)      --------->HSFB2a(2)            --------->ANAC46           ---------->DOF2   --------->AHL20(1)      <---------HSFC1(1)         <------ZmHOX2a(2)       ----------->GT1   <---------AHL20(2)--------------->AGL15           --------->ARR14(2)   --------->ARR11(3) ------->AHL20(2)    <---------------AGL15           <---------ARR14(2) <---------TOE2(3) --------->At4g35610   ataaattttttataatgaaatttctaattcgagaaaaaaaaatttagtcacttccgatccacaaaatctgagttaagaaattgaaaaaaaagagctaaat  12225400                                                                                           <---------TOE2(3)                                                                                      ----------->RAV1(1)                                                                                   --------->PCF2                      --------->AHL20(2)                                           <---------PCF5                      <---------AHL20(2)                                           --------->ATERF1(1)                     <---------AHL20(2)----------->GT1                            <-----------TCP11(1)         --------->HSFB2a(2)       <---------TOE2(3)   <----------DOF2          <------ZmHOX2a(1)         <---------HSFB2a(2)   <---------YAB1        <---------YAB1           <---------TOE2(3)   <---------YAB1  <---------YAB1  --------->MYB59  <---------ARR11(3)   --------->ATHB12---------->DOF2   gttttatgtttatggaacattattttaaatgttattttaggtagtcaaatgggttatctttgggccagacattagtcattgaggaggcccacaaaggtat  12225500                                             ----------->RAV1(1)                                           <-----------------AGL1                                 --------->ATHB51                  --------->ARR14(2)                                 <---------ICU4--------->O2        <---------ARR14(2)                <---------ANAC58 --------->YAB1--------->TGA1a     <---------GLK1(2)         --------                <---------ANAC58<---------ATHB12            <---------TOE2(3)           ----------->TBP        --------->MYB52(1)      --------->ICU4<xxxxxxxxxxxxxxxxsmallRNA(i)    ----------->HVH21     <---------ZAT6         ------------>CBF <---------ALFIN1 <------ZmHOX2a(1)     ----------->GT1   agaactagagtaacgaagccttgccttgaaggcaataatcgcttctcccacatcggaagtttgaggatggatactcgtctgtgacatagtataaataaag  12225600                     <---------ANAC58                     <---------ANAC55(2)                       <---------ANAC58                     --------->ANAC55(2)                       <---------ANAC46                   <-----------GT1                             <---------ANAC58                   --------->AHL20(2)                        <---------ZAT18                 *TSS<---------ANAC58    <xxxxxxxxxxxxxxxxsmallRNA(s)                             xxx          <---------ANAC58           <---------WRKY38(1)     --------->ZAT18                      xxx          <---------ANAC58           <---------WRKY12       xxxxxxxxxxxxxxxx>smallRNA(s)         xxxx         <---------HSFC1(2)          <---------WRKY45     --------->ALFIN1  --------->GLK1(1)  xxxxxx         --------->HSFC1(2)        <-----------HVH21   xxxxxxxxxxxxxxxxx>smallRNA(le3)       ------->GAMYB         <---------ZAT2  ----------->RAV1(2)          xxxxxxxxxxxxxxxx>smallRNA(si3)      --------->MYB52(1)         --------->HSFB2a(1)----------->HVH21  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ZAT18    <---------------------WRI1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ----------->GT1 --------->ANAC46 -->DOF2 --------->ZAT2 -------->P <--------ZAP1      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxx   aacatggtcgaagcttgcaaattacttacctggacggggtcaactcgtgatcaagaagacgagtggcctaggctagtgaattccattgcacataacggaa  12225700                                                                          ------>NtERF2                                                                          <---------At4g35610                                                                         --------->DEAR3(1)                                                                         --------->RAP2.3(3)                                                                         <---------ATERF1(1)                                                                        --------->ATERF1(1)                                                                    xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(fl3)                                          <---------ICU4           xxxxxxxxxxxxxxxxxxx>smallRNA(l2)             <---------ARR11(3)           --------->ATHB51         xxxxxxxxxxxxxxxxxxx>smallRNA(i2)             --------->ARR11(3)           --------->ATHB12        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------TOE1(3)             <---------YAB1           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->At4g35610       ==========================RAV     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ANAC58              ----------->RAV1(2)   --------->ALFIN1--------->ANAC46  <---------ANAC58              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------LBD16 <---------MYB46(3)     --------->HSFB2a(2)       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->ICU4         <---------ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(si3)    <-----------TGA1<------NtERF2xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   ------>MYB46(1) xxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------ANAC58-------->P xxxxxxxxxsmallRNA(fl3) <---------HSFB2a(2)   <-----------RAV1(1)<---------SPL7 ------>MYB83   gggtgcttagcttaaggtcttcccttgtggaagagcctgcgtcattatttgtggcagagggggtttgcgttcgcgcagcccctaccattcccagtagttc  12225800                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                           <---------GLK1(1)                                                                                          -----------                                                                                    --------->TGA1a                                                                                    --------->O2                                                        ======================================MYC_MYB                                                        <----------CDC5  --------->LBD16  xxxxxxxxxxx                                                     --------->ZAT18    <---------------AGL15  ------                                                     <---------ZAT18    --------------->AGL15  ------                                           <---------ALFIN1            <-----------------AG--------->GLK1(1)                                          <---------ZAT18              <-----------------AGL2 ------>ZmHOX2a(2)                                          <---------ZAT14              ----------------->AGL1<------ZmHOX2a(2)                                          --------->ZAT14              <-----------------AGL1--------                                    <---------ANAC58 <-------TEIL<---------TOE1(3)  <---------O2-----          <---------YAB1            <---------ANAC58--------->ALFIN1<---------GLK1(1) --------->ALFIN1 <----------DOF2       <---------ANAC46  ------>ZmHOX2a(1)       <---------TOE2(3)  <---------TGA1a<-   aatcttttgttcatgaatacccatggcctaggctagtggcttcctgcacttgaggtgcgctaagcctaaggtttccccaaatggccaagtgggagatcct  12225900                                    ------>NtERF2                                   <---------PCF2                                   --------->DEAR3(1)                                   <---------ATERF1(1)                                  --------->ATERF1(1)        <---------MYB46(3)        <---------DEAR3(1)    --------->ATHB51      <---------ANAC46    --------->ATHB12      <---------ANAC58    <---------ICU4        <---------ANAC58   --------->ICU4      <---------DEAR3(1)   <---------YAB1     <---------ZAT2<------NtERF2 -ARR11(3)            --------->At4g35610 -ARR14(2)            <---------At4g35610 >ARR14(3)            --------->ATERF1(1) -ARR14(3)            <---------ABI4(1) >ARR11(3)           <---------ATERF1(1) >ARR14(2)           --------->ALFIN1 >ARR10 <-----------RAV1(1)       --------->DEAR4(2) xxxxxxxxxxxx>smallRNA(se3)<---------SPL7                                                         --- --->TOE2(2)        <---------DEAR3(1)                         <----------DOF2       --------->YAB1 --->TOE1(2)  <---------ANAC58   --------->LBD16 --------->LBD16              <--------P    --------- ->GLK1(2)---------->ID1 <------NtERF2          --------->ANAC58     --------->At4g35610    --------- ->ZmHOX2a(1) <---------ANAC58 <---------LBD16  --------->ANAC46     <---------At4g35610<-----------GT1 ----------TGA1 --------->ALFIN1--------->ANAC46--------->ANAC58   <-----------GT1----------->GT1 <--   gcgtcattatttgttgccttggggggctgcgttcgcgcggcccattccatccgcaatagttcaatctttttagctctctggtaactgttataacatctga  12226000                                                                                            ------->MYC2                                                                                            <-------PIF5                                                                                            <-------MYC2                                                                                            ------->PIF5                                                                                            <-------MYC3                                                                                            ------->MYC3                                                                                           <---------TGA1a                                                                                           --------->TGA1a                                                <-------GAMYB                              --------->bZIP60(2)       --------->AHL20(2)                      --------->MYB111(2)                         <---------O2       <---------AHL20(2)                      ----------->GT1                             --------->O2     <----------DOF2                <---------AHL20(1)                                     --------->ANAC46     --------->TOE2(3)              --------->AHL20(1)                                   <---------ALFIN1 <----------DOF2                    <---------AHL20(2)     ==========================================bZIP_DOF ------>ARR11(3)          --------->ALFIN1     <---------MYB46(3)   <-------TEIL   <---------CCA1(2) >At4g35610            <---------AtMYB61   <---------TOE1(3)     --------->At4g35610--------->ARR14(2) -->RAV1(2)            <-----------RAV1(1) <---------TOE2(3)     <---------At4g35610<-----------ARR10 -------ARR11(3) --------->ANAC55(2)--------->AHL20(2)     <----------DOF2      <---------ATHB12   ggtctttctttaattgttcacgtttttggtggagctattttattgaaggttgttaatttgactttggagatgcaatcttctaatcaaatctccacgtgag  12226100  Previous    Next  AGI:  At4g23410.1    Description:  TET5 (TETRASPANIN5). similar to TET6 (TETRASPANIN6) [Arabidopsis thaliana] (TAIR:AT3G12090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68973.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) Range:  from: 12223963    to: 12225235    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g23420.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G23430.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62836.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 12225617    to: 12228728    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version