Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------GLK1(1)                             --------->ANAC58                             --------->ANAC58                                                     <--   --------->ARR14(2)      ---------->DOF2                                                     <-----   <---------ARR14(2)<---------AHL20(2)                                                        ======  <------ZmHOX2a(1)  --------->AHL20(2)                                                        ------ -->DOF2            --------->AHL20(2)                          <---------GLK1(2)           <--------   agaaggatttgatgaaacaaaaattaatcgaaaggaactcagactcatataaactatgaagaacaagaatttcaaatgtggtttacaaataagtttacat  12217100 --------->HSFB2a(2)                          <---------MYB52(2) <---------HSFB2a(2)                        ---------->DOF2 -------AHL20(2)                   <---------AHL20(2)                         ---------->DOF2 ----------AGL15                 --------->CCA1(2)                 <---------MYB59 --------->GLK1(1) ==================================================================================MADS_MADS --------->AGL15                --------->ARR11(3)                 ================================== ---GT1    <---------ANAC55(2)  <---------ARR11(3)                 --------------->AGL15   tttatagaaaaatatgtaaactcagtctaaacgagatataatttgacaaagaacgtagcaattcaatgacctaaaattgaaaaagaaatctaaaactaat  12217200                              --------->ANAC58                              --------->ANAC58                              <----------ID1                              --------->ANAC46                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                    --------->AGP1                    <---------AGP1                    <---------ARR11(3)                    <---------ARR14(2)                    --------->ARR14(3)                    <---------ARR14(3)                    --------->ARR11(3)           ----------->GT1                   <---------CCA1(2)        <---------------AGL15                 <---------HSFB2a(2)        --------------->AGL15  --------->AHL20(2)             <--                 --------->HSFB2a(2)        <----------DOF2        <---------AHL20(2)            ----                 --------->HSFC1(1)  ---------->DOF2        ----------->GT1                      <---     ---------->DOF2--------->ARR14(2)--------->DAG2      ---------->DOF2              --------->CCA1(2) ===========================================================MADS_MADS                 --------->ARR11(3)   aaacacaaaaagaaaacttctagatcttcaagacgacacaaaagtgctattttgtgaaaaaaaagaaaattatatagcctaagtcttagatatatgtaag  12217300             ------->TEIL          <---------YAB1        --------->YAB1        <---------ICU4       --------->ICU4           --------->MYB52(1)       <---------ATHB12       <---------MYB52(2)     --------->WOX13(1)  --------->ANAC58                                             <---------ANAC58  <------ZmHOX2a(2)      --------->ANAC46                                             <---------ANAC58 ----ZmHOX2a(2)          --------->ANAC58                   <---------GLK1(1)         <---------ANAC46 ----->ARR11(3)    --------->At4g35610                <----------DOF2                ---------->ID1 ------ARR11(3)    <---------At4g35610              ------>ZmHOX2a(1)              <-----------RAV1(1)   atcgatccaatcatgaaactctgctccaagaaactaagggagaaacataccgtcctctttagaaatctcatgaattagttaacttgtgtcgtcttcttaa  12217400                                                                                         <---------GLK1(2)                                                                                   --------->LBD16                                                                                  ----------->RAV1(1)                                                                                  --------->RAP2.3(2)                                                                                  --------->RAP2.6(2)                                                                                  --------->DEAR3(1)                                                                                 --------------->AtSPL3                                                                                 --------->RAP2.3(1)                                                                               --------->ARR14(2)                                                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                   <XXXXXXXXXXXXXXXXXXXXMIR845A                                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 --------->ANAC58                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <---------ANAC55(2)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 --------->ANAC46                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 --------->ANAC58                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                 --------->ANAC55(2)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                   ----------->GT1       --------->ANAC58         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <---------DOF5.7(2)   --------->ANAC55(1) --------->HSFC1(2)        <---------ARR14(2)         --------->DOF5.7(2)    <---------LBD16      <---------HSFC1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)        --------->TOE2(3) ----------->GT1--------->ANAC58         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)       ----------->GT1 ---------->DOF2 <-----------RAV1(2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   gacatagaagcgttaacaacaaggtaaaaggaaacacggaatcaggcaatatcgatgtttccatagcatcaattggtatcagagccgcacaaattcttca  12217500                                      --------->DEAR3(1)                                      ----------->HVH21                                 --------->ANAC46                                 --------->ANAC58                                 --------->ANAC58                        ----------->HVH21         ----------->HVH21    --------->ARR14(2)<------------CBF         <xxxxxxxxxxxxxxxxsmallRNA(i)--------->At4g35610      <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ANAC58   --------->ALFIN1     --------->ALFIN1<---------LBD16                --------->ARR14(2)   <------NtERF2      --------->O2   <---------At4g35610              <---------CCA1(2)  <----------- <---------ANAC46     <---------O2   <------NtERF2                   <---------MYB52(1)  ------------ <---------ANAC58     <---------TGA1a*TSS--------->ANAC58    <---------ZAT18    <-----------TBP <---------ANAC58     --------->TGA1a--------->DEAR3(2)      ------------>CBF <-----------TBP   taggcgtggctctgacagcaatcgacgtgatggaaacgcagcgacggaactattgagaaatcgtgcaatcccttatctgcttatatatagctctaaatat  12217600                                                    <-----------GT1                                              <---------DAG2                                             <------NtERF2                                            <---------RAP2.6(3)                                            ------>NtERF2                                           ------->GAMYB                                           --------->RAP2.3(3)                                           --------->RAP2.6(2)                                           --------->DEAR3(1)                                          --------->ATERF1(1)                                          --------->ERF1                                          --------->MYB46(3)                                          --------->RAP2.3(1)                                         --------->ZAT2       <------ZmHOX2a(1)                 <---------ZAT2  >>>>>>>ZML2                            --------->At4g35610  <---------HSFC1(1)                     <---------At4g35610  --------->HSFB2a(2) --------->TOE1(3)  <---------ATERF1(1)                                       --  <---------HSFB2a(2) --------->TOE2(3)  ------>NtERF2                                        <------ZmHOX2a(1) ------AGL3     --------->YAB1----------->HVH21<----------DOF2                              --------- ----->AGL3  --------->WOX13(1) <<<<<<<GRF7--------->RAP2.3(2)---------->DOF2        <-----------GT1   agttctagaggagattaatcaaaaccctaaccctgacaaatgcagccgcctttttaaccaaaaaaaaagcccaacttaaaatcaaattaacaattaggaa  12217700                      <---------YAB1                     --------->AHL20(2)                    --------->YAB1                --------->AHL20(1)                                                            -------                <---------AHL20(2)                         <---------At4g35610               --------               --------->AHL20(2)                         --------->ARR14(2)     ------>ZmHOX2a(1)       --------->AHL20(2)                   --------->DAG2------->TEIL <---------AHL20(2)   ---------      --------->AHL20(2)--------->GLK1(2)  ---------->DOF2<---------ARR14(2)   ------>ZmHOX2a(2) ------->GLK1(1)--------->AHL20(2)<---------------AGL15  <---------CCA1(2)   <---------ARR11(3) ----- >MYB59<---------AHL20(2)     --------->ZAT14      <---------YAB1      <-----------GT1---------->DOF2   gaaatctattaaaaaaaaaaaattataatctgtttactaaaaaaaaaaagtttatgtttgtatctgatcatatatacttgatcctcacaaaagaaaaagt  12217800        --------->YAB1        <---------ICU4              ----------->GT1       --------->AHL20(2)          <---------TOE2(3)       --------->ICU4          --------->YAB1     --------->YAB1           --------->ICU4                                       <---------ARR14(2)   --------->AHL20(2)         <---------YAB1       <---------AHL20(1)              --------->ARR14(2) ---->GT1                  <---------YAB1          --------->AHL20(2)         <------ZmHOX2a(1) ->DAG2<---------ATHB51   --------->ARR11(3)       --------->AHL20(1)      --------->At4g35610 ->DOF2<---------AHL20(2) <---------ARR11(3)       <---------AHL20(2)   --------->At4g35610        -- ------>GT1             <---------YAB1 --------->AHL20(2)               <---------At4g35610       ---   gaaaaaaaaataattatctaaaaatcaagataattataagattaaaaatccattttattgtttaactaaaactaagcagaggacatatacactaagtgta  12217900                                                                                      --------->AHL20(1)                                                                                      <---------AHL20(1)                                                                                   ------>MYB83                                                                                   ------>MYB46(1)                                                                                <---------ANAC55(2)                                                                                --------->ANAC55(1)                                                                                --------->ANAC46                                                                                --------->ANAC55(2)                                                                              <---------ALFIN1                                                                             -------->P                                                  --------->AHL20(1)         ------>MYB83                                                  <---------AHL20(2)         ------>MYB46(1)                                                  --------->AHL20(2)        ----------->RAV1(1)  --------->ARR11(3)                   <---------ARR14(2)                 --------->MYB46(3)  <---------ARR11(3)                   --------->ARR14(2)               <-----------GT1  <---------AHL20(2) ------->DAG2--------->ANAC58     ------>ZmHOX2a(1)      --------->ARR11(3)--------->AtMYB61 ------->DOF2--------->ANAC58 ------->TEIL ------>ZmHOX2a(1)  <---------WRKY18(1)<---------MYB111(1)   taaagttcttaagacaagtaaactaaaatatgcatcctccaggtcctccaaataaaatagctcttgaccaaaattcaccaacacctaatattttttggac  12218000  Previous    Next  AGI:  At4g23387.1    Description:  MIR845a; miRNA Range:  from: 12217457    to: 12217537    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g23390.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20170.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20170.2); similar to Os03g0807100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67164.1); contains InterPro domain Protein of unknown function DUF239, plant (InterPro:IPR004314) Range:  from: 12217816    to: 12219723    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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