Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->TOE2(3)                                 --------->ANAC58                                 --------->ANAC46                                 --------->ANAC58                              <---------SPL7                            <---------------AtSPL3                                         <---------ANAC58                            <---------------AtSPL8                                         <---------ANAC58 ---YAB1                <---------TOE1(2)              --------->ANAC46                    <---------ANAC46 >YAB1                <---------ANAC46 --------->TOE1(3)     --------->YAB1     <----------DOF2   ttgtttctcaccgatgaagatgctccttggattgtacgaaacattaactcatcaaacacactatcaaattccttctggtcttcttttcttatttcgttta  12166600                    ------>NtERF2                  --------->At4g35610                 <---------ATERF1(1)                 <---------RAP2.3(1)                <---------RAP2.3(3)                <---------RAP2.3(2)                --------->ANAC46                            ------->GAMYB                <---------DEAR3(1)                         --------->MYB46(3)               --------->RAP2.6(3)   --------->LBD16       <---------MYB52(2)          --------->TOE2(3)         --------->LBD16      --------->MYB52(1)         --------->YAB1 --------->ANAC46              <---------ZAT6         <---------ICU4 --------->ANAC58     <---------ARR14(2)      ---------->DOF2              ---         --------->ATHB12          <---------LBD16   <---------------------WRI1                   <--        --------->ICU4<---------ALFIN1       --------->ARR14(2)  --------->ANAC58               <----        <---------ATHB12--------->ANAC58    <------ZmHOX2a(1)    --------->ANAC58  <---------At4g35610   cattgaagaaatcattagacggctccaagccaagtagcccggagaaggatttgttagagtaacgaacaaggcaaagggtttcttcaccagaccatgagaa  12166700                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                         ------------                                                                                       <---------ZAT14                                                                                       --------->ZAT18                                                                                     --------->At4g35610                     ------>ZmHOX2a(2)                                          ------->PIF5                    <------ZmHOX2a(2)                                           <-------PIF5                   --------->AGP1      <---------ANAC46                        --------->At4g35610                   --------->ARR11(3)<---------At4g35610                     <---------ALFIN1     <---------MYB52(1)              --------->At4g35610                    <---------At4g35610  --------->SPL7   <---------ARR11(3)--------->ZAT14                     <-------TEIL<---------At4g35610 ------>DEAR3(2)   --------->ARR14(2)<---------ZAT2                 <-----------RAV1(2)<---------ZAT18 ----------AtMYB77 <---------ARR14(2)--------->ZAT2              --------->YAB1----------->RAV1(2) -----ARR14(2)     <---------AGP1    <---------ZAT14        <---------At4g35610--------->ZAT2   accgtccgtctggtttagacagatctgtagtaaaccctctgctgtgttcttaatacagttggagcaaacatcaggttcagcacctggagcgcacatcccc  12166800                                                             --------->bZIP60(1)                                                             <---------O2                                                             <---------ANAC46                                                             <---------ANAC58                                                             --------->O2                                                             --------->TGA1a                                                             <---------bZIP60(1)                                                             ========================================                                                             <---------TGA1a                                                             <---------ANAC58                     <--                                                             ========================================                                                             ========================================                                  --------->ATHB12        <---------MYB52(1)                     ----                                ------->TEIL              ----------->HVH21                      ----                             --------->ANAC58             ----------->TGA1                       <---                             <---------MYB52(2)          <-----------HVH21                       ----                             --------->MYB46(3)         <---------ANAC58                       <-----                             --------->ANAC58           <---------ANAC58                      <------    ----------->ARR10       --------->SPL7              <---------O2                         <-------   <------NtERF2           --------->MYB52(1)   --------->ARR14(2)                         ---------- <---------ANAC58    --------->ANAC58           <---------MYB52(1)                        ----------- <---------ANAC58    ------>MYB46(1)            <---------ARR14(2)                       --------->ATERF1(1) <---------ANAC46    ------>MYB83--------->MYB46(3)     --------->O2                  <------ZmHOX2a(1) --->ANT             --------->ANAC58          <---------RAP2.6(3)                 <------ZmHOX2a(1)   atggcgtagactctgtctgtaccaagcccgaacgaaccattgaagtagccgttctgagccgtgacgttagaggcgaaggtagagaggaggagacgacggt  12166900      <---------ICU4     --------->ICU4   --------->YAB1  <---------YAB1 ===MYC_MYB -----GAMYB ==MYC_MYB                              <-----------HVH21 ==MYC_MYB                             <---------bZIP60(1) ----->MYB111(2)                     --------->ZAT14    --------->ZAT18 ----->MYB52(2)                 --------->ZAT2          <---------ZAT14 ------MYB46(3)                 --------->At4g35610     <---------ZAT18 ----->MYB55(2)                 <---------ZAT2     <-------GAMYB --GAMYB                       --------->ANAC46   --------->MYB52(2) ---MYB46(3)                -------->P --------->bZIP60(1) --DEAR3(1)      <---------ANAC58    <---------ZAT14    --------->ZAT14         --------->TOE1(3) -->AtMYB77      <---------ANAC58   --------->ALFIN1   <---------ANAC46  ----------->RAV1(2)   >>>>>> >HVH21    <---------YAB1   --------->MYB52(1)    <---------MYB46(3) ----------->HVH21      >>>>>>>>>TBF1   tgttgtcataagtactattgggtttgaaactaccagcagtgttgtcacaagtttgttgtgcagaaacagaaatgaccctgaagcttaaaatgaagaagaa  12167000                                                                                    --------------->AGL15                                                                                    <---------------AGL15                                                                               <-------GAMYB                                                                              <---------MYB46(3)                                                                              --------->MYB52(2)                                                                          <---------MYB46(3)                                                                          <-----------RAV1(1)                                                                       <---------MYB46(3)           <                                                                    <-----------RAV1(1)             -                                               <----------DOF2  <---------ANAC46   <-----------------AGL3      <------ZmHOX2a(1)  <----------DOF2   ---------->ID1    ----------->HVH21<------MYB83 <---------MYB46(3) >>>TBF1      <-----------GT1        <----------DOF2       --------->ALFIN1   <------MYB46(1)      <-   gaaacagaggattatttcacaactcgtctttgccattttctttttgtttctttagaaaaatgtgtgactggtgttgttgttggttactactagtggttct  12167100                                                   --------->MYB46(3)                                               ----------->HVH21                                          --------->ANAC58                                          --------->ANAC58                                         <---------LBD16    --------->AHL20(2)                  --------->MYB52(1)  <---------YAB1                       --------->MYB46(3)     <-----------GT1 --------->TOE2(3)                    --------->SPL7     ------>ZmHOX2a(1) --------HAHB4                    <---------HSFB2a(2)    <---------YAB1 -------->YAB1              <-----------GT1   <---------KAN4(2)       <------------CBF --------YAB1  <---------CCA1(2)  --------->HSFB2a(2)   --------->TOE2(3)      <----------DOF2   tatcattaatatggcccataacttctgaattttctactcgaacgacggaatgacccatcctcattaaccagacattgactactttggattttaaggggaa  12167200                                         <-----------GT1                                 <---------At5g28300                                <-----------GT1                               <---------YAB1                                                      --                             --------->YAB1                                                       ---                             <---------ICU4                                              <----------DOF2                         --------->ICU4 <-----------GT1             <------------CBF     ------------                  ------------>CBF<---------TOE2(3)                --------->ATHB12    ---------->ID1        --------->ARR14(2)  <---------YAB1                 ---------->DOF2 ---------->DOF2    <------        <---------ARR14(2)<---------AHL20(2)      ---------->DOF2 <---------YAB1      <-----------GT1        <---------GLK1(2)--------->AHL20(2)     <---------YAB1   <<<<<<<<<<<<<<<<<LFY<<<<<<<<<<GT-3b   gacgtagttggattctctaagtcaatatttattattacggttttacccttataaaagaatataaagtcaacattggccaaagcttatttttcttttttga  12167300                                              ------>ZmHOX2a(2)                                              =============HOX2a_HOX2a          <---------ALFIN1                                           -------->HAHB4                      --------->At4g35610                                           --------->ATHB12            --------->YAB1                                          --------->ICU4              <---------YAB1         <------------CBF                 <---------YAB1             <---------AHL20(2)       <---------TOE2(3)                  <---------ATHB12           --------->AHL20(2) ------->DAG2                           --------->YAB1              --------->YAB1 ------->DOF2  <---------MYB59      --------->ZAT6          <---------YAB1     <---------At4g35610 --->AGL15<---------WOX13(1)  =======================HOX2a_HOX2a--------->AHL20(2) ---YAB1<<<<<<<<<RAP2.2       <------ZmHOX2a(1)     ------>ZmHOX2a(1)--------->AHL20(1)        ------   taaagggtttagattggcctaactttcaacgaggactaacactaatgatcggtcctacaattactataaattataatagtcagcactcgagctattgtag  12167400                                                                                             <-------       <---------------AGL15             ----------->GT1                               <---------AHL20(2)       --------------->AGL15            --------->TOE1(3)                             <---------AHL20(2)     <---------WRKY18(1)                --------->TOE2(3)            --------->YAB1   --------->AHL20(2)  <---------ANAC58                     ----------->RAV1(2)      <----------DOF2    --------->AHL20(2)  <---------ANAC58             ------->TEIL                     <---------DAG2    --------->AHL20(2) --->ETT(2)                   <---------CCA1(2)        <----------DOF2   --------->MYB52(1)--------->ATHB12   acatgcttgactaatatagaaacttcaaatttgaatcttcaacctgaaaaaatgaccctttgtaaactttttcataaacggacaataaataaatgataga  12167500  Previous    Next  AGI:  At4g23250.1    Description:  EMB1290 (EMBRYO DEFECTIVE 1290); kinase. similar to protein kinase [Arabidopsis thaliana] (TAIR:AT4G23260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63725.1); contains InterPro domain Protein of unknown function DUF26 (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains Range:  from: 12162014    to: 12167036    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g23260.1    Description:  protein kinase. Identical to Cysteine-rich receptor-like protein kinase 18 precursor (CRK18) [Arabidopsis Thaliana] (GB:Q8RX80;GB:O65477); similar to EMB1290 (EMBRYO DEFECTIVE 1290), kinase [Arabidopsis thaliana] (TAIR:AT4G23250.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63725.1); contains InterPro domain Protein of unknown function DUF26 (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro Range:  from: 12167364    to: 12170096    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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