Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <---------TOE1(2)                                                          <---------TOE2(2)                                                   ------->MYC3                                                   <-------MYC3                                                  --------->ANAC58                                                  --------->ANAC55(1)                                                  --------->ANAC58                                                  --------->ANAC46               --------->At4g35610                                                  <---------TGA1a            <---------ARR11(3)    --                                                  --------->O2               --------->GLK1(2)    ---                                                  <---------O2              --------->RVE1(1)--------                                                  --------->TGA1a        --------->YAB1      <-------                                                <---------ALFIN1    --------->ZAT18          ======== ---------->GT1                               --------->ANAC46      <---------ZAT18      --------->REM1(1)   cagcgaaaaatggatggctcataacaagtatacatatacttgatatacacacacgtttcataggttgtagtgccataaaaatctgatgactacaactaca  12027000            <-----------HVH21           <---------ZAT6                             <----------DOF2                               -       <---------YAB1                                 ===============================================      --------->TOE2(3)                               --------------->AGL15                       <--     --------->YAB1                                   <---------------AGL15                       <--     <--------HAHB4                              <------ZmHOX2a(2)                                ---     --------->ATHB12                           --------->AGP1                                    ---    <---------YAB1                              <---------ARR14(2)                                --- ------->DAG2           ---------->DOF2         --------->ARR14(2)                                <-- ------->DOF2          --------->YAB1  <---------ANAC58                             <-----------GT1<- ------->AGL15      ====================================HOX2a_HOX2a        <---------YAB1         <-- --------AGL15      ------>ZmHOX2a(1)  <---------ANAC58                  <-----------GT1          --- =====================================================================MADS_MADS--------->AHL20(2)<---   aaaagtatcattagtgtcagtcctataaaagtagtctaatttcttactccgatctacttttatatgaaaacaaaatcaccattatataactctcttatca  12027100         --------->YAB1      --------->YAB1  <---------YAB1 ----->ZmHOX2a(2) =====================================================MADS_MADS -------ARR11(3) -------ARR14(3)                                                                            --------- ------>ARR11(3)                           <---------At5g28300                         ------>ZmHOX2a(2) ------>ARR14(2)                       <---------ICU4                                  -------------- ------>ARR14(3)                      =============================================================== -------AGP1                          --------------->AGL15                           <------ZmHOX2a(2) -----ZmHOX2a(2)                      <---------------AGL15                          <---------ARR14(2) -------ARR14(2)                      --------->ICU4                                 --------->ARR14(2) ------>AGP1                    ------->TEIL  --------->At5g28300               <---------ARR14(2) ------CCA1(2)<-----------GT1<---------ATHB12----------->GT1                    --------->ARR14(2) <-   gatcttgataatcatataaccaaaaaatccaatgaatctacttattacggtgaaaattggacccgattagcccctctagtcgaatcggatccaaaaattg  12027200                                                                                         <---------ARR11(3)                                                                             ------>ZmHOX2a(2)                           --------->AHL20(2)                              <---------AGP1--------->ARR11(3)   <---------ZAT18     --------->AHL20(2)                                  <---------ARR14(2) >DAG2               ----------->GT1--------->DAG2                         --------->ARR11(3)    ---- --->AGL3  <---------MYB52(1)      ---------->DOF2 <---------ZAT6          --------->ARR14(2)    ---- ====MADS_MADS       --------->ANAC58  <----------ID1                      <---------ARR11(3)    ---- --------ICU4        --------->ANAC58<---------------AtSPL8               <---------CCA1(2)    ------   atcagtgcaaatcgttttttcacaagtaaataaacaaaaaagggacatacctagagctagagaactcatagagtttggatcttggagagaagataaccaa  12027300                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                                                  <---------ANAC58                                                                                 <---------ZAT2                                                                              <---------ANAC58                                                                              <---------ANAC58                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                      <-----------TGA1                        <---------ATHB51                              <-----------HVH21       <---------At4g35610                                           --------->ANAC58            ----       --------->At4g35610                                           --------->ANAC46    <---------ANAC58 ----->ANAC58          <---------MYB52(1)                            --------->bZIP60(2) <---------ANAC46 ----->ANAC58        ----------->GT1                                 --------->ANAC58    <---------ANAC58 ----->ANAC46     <------ZmHOX2a(1)                                 <-----------STF1<-----------RAV1(1) ---->DOF2    ---------->DOF2       <----------DOF2             --------->HSFB2a(2) <---------MYB46(3)   agcaacttcagcatcacaaaggaccgataattcgaaggctttcttcaagagtccatttcttctcttcgaaaacgtcacttgcctgcttgttgcgttctct  12027400                                                             --------->GLK1(2)                                <---------MYB52(1)     ----------->TBP                              --------->TOE2(3)        --------->AHL20(2)              --------->ANAC55(2)                            ------>MYB46(1)            <---------AHL20(2)              --------->ANAC58                     <---------ALFIN1                ----------->TBP                   --------->ANAC58             <---------MYB52(1)<----------DOF2     <-----------TBP          --------->ANAC58       <---------At4g35610  ------>MYB83           --------->AHL20(2)       --------->ANAC46 <------- ------>ZmHOX2a(1)  --------->ANAC46         --------->KAN4(2)              --------->ANAC58--------- ----->ARR14(2) <-----------GT1------>ZmHOX2a(1) <----------DOF2<---------ANAC46   --------->CCA1(2)   atcctcttcatctccgttttgcccctcaccatcctttacttctagtttattctttatataaatattctgtgtaaaatcacacaagagacaagtatttatt  12027500                                                                     ---------->DOF2   ------>MYB83                                           <------ZmHOX2a(2)   ------>MYB46(1)                                       --------->ARR11(3) ------->GAMYB                        ----------->TBP    --------->AGP1 --AHL20(2)                           <---------AHL20(2)<---------At4g35610                    ------ >ICU4         --------->YAB1       <-----------TBP     --------->At4g35610                   -------   caaccaaataaaacgaatagtaaccagaaattagaactatatatatggataatggttcagatcaagaacataaaagaagagacatactccaactacaaaa  12027600                                  --------->AHL20(2)                                 --------->AHL20(1)                                 <---------AHL20(1)                                 --------->AHL20(2)                    --------->CCA1(2)                                 --------->MYB52(1)                   --------->ARR11(1)                             ------->GAMYB                 -----                   <---------ARR11(3)                             --------->TOE2(3)            ------                   --------->ARR14(2)       --------------->AGL15--------->MYB46(3)            ------                   <---------ARR14(2)       =========================================================                   --------->ARR11(3)  <-----------GT1          -------->P                    <------ --->DAG2        ----------->ARR10<---------AHL20(2)           --------->WOX13(1)            <------- --->DOF2   ---------->DOF2      <---------AHL20(2)          <------ZmHOX2a(2)            <---------ARR11(3)   gtgaccaagaacataaaagaagatatggatttgaatttatttttctctgtaaatagaatatggatcaaccacaaacagaagatggaattcgagatttacc  12027700       --------->ICU4 ---------->AGL15                                                        ----------->GT1 --------->GLK1(2) ----------->AG                                                         ----------->GT1 <---------GLK1(2) ----------->AGL1                                                 <---------ZAT14       <---------ARR11(3) ===========MADS_MADS<---------WOX13(1)                          --------->ALFIN1       --------->ARR11(3) ---At5g28300       <------------CBF                   <---------HSFB2a(2)            ----------->ARR10 ----GT1       <----------DOF2                         --------->HSFB2a(2)<------ZmHOX2a(1)   ctatttgtaagtatgagctttggattgatgtgtctctctatgtgtataatctatcttctataagtgagtggagagaggaaaaataggcgagattttggga  12027800                       --------->ANAC58      --------->ALFIN1              --------->GLK1(2)             <------ZmHOX2a(1)                                      <-             <---------GLK1(2)       --------->YAB1             ----------->GT1          --------->YAB1     <---------YAB1    --------->ANAC58<---------REM1(1)      ---------->DOF2          <---------WOX13(1)     ----------->HVH21<---------GLK1(1)<---------YAB1     ---------->DOF2            --------->ATHB12   --------->ALFIN1  ---------->DOF2<---------YAB1    ---------->DOF2               <---------YAB1 --   agagggtgtgatagagattcttggaaagccctagatttatgatgaaggaggggagagaaagaaagaaagaaaaaaactaagtgtttttgattgataattt  12027900  Previous    Next  AGI:  At4g22950.1    Description:  AGL19 (AGAMOUS-LIKE 19); transcription factor. Identical to Agamous-like MADS-box protein AGL19 (AGL19) [Arabidopsis Thaliana] (GB:O82743); similar to AGL14 (AGAMOUS-LIKE 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G11880.1); similar to MADS-box transcription factor [Plantago major] (GB:CAJ38368.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 12023926    to: 12027432    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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