Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               ------>ZmHOX2a(2)                                                           <---------AGP1<---------AHL20(1)                                                           <---------ARR11(3)                                                           --------->ARR11(3)                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                           --------->AGP1--------->AHL20(1)                                             --------->AHL20(2)     --------->AHL20(2)         <----- ----------DOF2                              <---------AHL20(2)  --------->ICU4                <----- ---->TEIL                       <---------AHL20(2)        <-----------ARR10      --------->YAB1 -----ZAT14                      --------->AHL20(2)       <---------CCA1(2)   <---------AHL20(2)  --- -------->AtSPL8         --------->CCA1(2)--------->WOX13(1)<------ZmHOX2a(2)--------->AHL20(2)<-----   tacttttgtgtctcacaattctcttagatatgaaattaaaaaaccaattaaatacaaatcagatctaatttttaatatataaaatcagcatgttttggct  12012300                                                   ----------->RAV1(2)                                                 --------->ANAC46                                              <---------WRKY38(1)                                              <---------WRKY45                <------ZmHOX2a(2)             ------>ZmHOX2a(2)                <---------WRKY12               --------->ARR11(3)            <------ZmHOX2a(2)          --------->AHL20(1)                    <---------ARR11(3)           <---------ARR11(3)          <---------AHL20(1)              --------->HSFB2a(2)      ----- ----ANAC58--------->ARR11(3)       --------->AHL20(2)                 <---------HSFB2a(2)      <---- ----ANAC46--------->AGP1         <---------AHL20(2)             --------->GLK1(2)           <------- ------>ATHB12      --------->TOE2(3)  --------->ARR11(3)       <---------GLK1(2)  --------->ZAT14 ----ANAC58<---------AGP1         --------->AHL20(2)          <---------TOE2(3)    <---------ZAT14 <-   tgatttgtccatagatctataacatttatcaactatttttatatattgtcaacgcctgccatctaagattcttctacaagatcactagagtgttttaact  12012400   ----------->GT1                                       --------->ANAC58   ------>ZmHOX2a(1) ---------->AGL15                                        --------->ANAC58---------->ID1      <------- -----------AGL15                --------->TOE2(3)     ---------->DOF2<----------DOF2        <------- ----GT1      ----------------->AGL2        --------->MYB59          <---------DAG2    <---------ATHB12 ---------DOF2----------------->AGL1 <-----------------AGL1       <-----------GT1   --------->TOE1(2)   gcttttagtaaaaaatgccaaaaacagacattaatccataactatttaggcccatcttcaagcccattaaaccttttcctcttaatccaacgattaagat  12012500                                                                                     --------->LBD16                                                                                   <---------LBD16                                                                                   --------->LBD16<--                                                                                  <---------LBD16<---                                     --------->ANAC46                            <---------LBD16 <---                            ----------->RAV1(2)                         --------->TOE2(3)   ---------                            --------->At4g35610          <---------ANAC46     <---------GLK1(1)  ----                            <---------At4g35610          <---------ANAC58     --------->GLK1(1)  ----  --------->YAB1          <---------ALFIN1               <---------ANAC58------>ZmHOX2a(1)--------->DAG2 --YAB1 --------->TOE1(3)------>ZmHOX2a(1) <----------DOF2           <-----------GT1--------->LBD16 --TOE2(3)       --------->MYB52(1)  <---------ALFIN1   ---------->ID1  --------->TOE1(3)---------->DOF2   tgaatcagaagcttaaacctcacggtcctcacctgaatcacaccgcttaacttcacatgtcgttttctgtttttccttagatttcccgggaaaaaggaaa  12012600         <------------CBF       --------->AHL20(1)       <---------AHL20(2)                                 ---------->DOF2      --------->AHL20(2)                                --------->YAB1 --------->AHL20(2)                                     --------->AHL20(2) <---------AHL20(2)                                    ----------->TBP -------ICU4        ----------->GT1                  --------------->AGL15 ------AHL20(2)    --------->DAG2              ------>MYB46(1)   ---------->DOF2        *TSS ------ATHB51     --------->DAG2               ------>MYB83   <------ZmHOX2a(1)    <---------ALFIN1 -->GT1--------->AHL20(2) ---------->DOF2    <---------MYB59 <----------ID1     --------->MYB46(3) ----->AHL20(2)  ---------->DOF2 ----------->GT1   ------------>CBF    --------->ARR11(3)           < ----->ICU4 ----------->GT1--------->DAG2 XXXXXXXXXXXXXXXXXXXXX>MIR850 <---------ARR11(3)      ------   taattaaaaaaaattggcaaaaaggtaaaaaagttaagttaaaaaaaccaaactacaataaaaaggacaaagagatgtttcaacaacacttcaacaaaaa  12012700                                                                          --------->ANAC58                                                                 ------>ZmHOX2a(2)                                                                <------ZmHOX2a(2)                                                               <---------ARR11(3)                                                               --------->ARR11(3)                                                               <---------ARR14(3)                                                               --------->ARR14(3)                                                               --------->ARR14(2)                                                               <---------ARR14(2)                                                             ----------->ARR10 <----------DOF2                                 --------->MYB52(1)       --------->ANAC46<---------ARR14(2) ---------DAG2                 <---------WRKY38(1)       >>>>>>>>>TBF1    --------->ANAC58--------->ARR14(2) ---->DOF2              ---------->DOF2       <<<<<<<<<<<<<<<<<LFY ------>ZmHOX2a(1) --------->MYB52(1)   agccttttgttcaatctgaagaaaaaaaaagagtcaacaaaaaaaaaaaaccaatggaagaagaagatcctacagcaagcaatgtgataacgaattcgaa  12012800                          <---------DEAR3(1)                         <---------------------WRI1                         <------NtERF2                        --------->LBD16                        ------>NtERF2                        <---------ATERF1(1)                       <---------DEAR3(1)                               --------->WOX13(1)        ---                       <---------ATERF1(2)                             --------->AHL20(2)      ------                       --------->DEAR3(1) --------->MYB55(2)      <---------ATHB12            -------                      --------->ATERF1(1) <---------MYB46(3)    --------->WOX13(1)       --------->YAB1                      <---------LBD16    <---------AtMYB61--------->ANAC58 <---------ICU4--------->TOE2(3)                  ------>MYB83          <---------MYB52(1)--------->ANAC58<---------ATHB12  ---------                  <-----------HVH21    --------->LBD16    --------->ANAC55(2)         --------->WOX13(1)                  ------>MYB46(1)    <---------LBD16      <---------ANAC55(2)       <---------ATHB12         --------->YAB1--------->ATERF1(2)--------->ABI4(2)   <---------ATHB12 --------->YAB1 <------   ttcttcatctatgagaaacctatcgccggcgatgaatactccggtggtttcacttgagtcacgaatcaatcgattaatcaatgctaatcaatctcaatca  12012900                                                             ===================================HOX2a_HOX2a                                                            ====================================HOX2a_HOX2a                                                            <------ZmHOX2a(2)                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                       ------>ZmHOX2a(2)                                                       <---------LBD16                                                      <------ZmHOX2a(2)                                                      --------->ARR14(1)                                                      --------->CCA1(2)                                                     --------->ARR11(3)                                                     --------->ARR11(1)                                                     <---------AGP1       --------->YAB1                                --------->ARR14(2)       <---------ICU4                                <---------ARR14(2) ------>AtMYB61                                     <---------GLK1(1) --->YAB1<---------YAB1                            ----------->ARR10 -->MYB46(3)                       <---------WOX13(1)--------->AGP1                                -- >WOX13(1)                      <---------YAB1--------->LBD16------>ZmHOX2a(2)                 ------ ---ATHB12          <---------ARR11(3)    <-----------GT1--------->LBD16 <----------DOF2 ------>ZmHOX2a(1)   ccatcaccatcatcactatcaaggtctatatactctgatagatttatccccagtagatccggatccaatttcgctcttttcgatctatctccttctccta  12013000                                                   <---------DEAR3(1)                                                  ------>NtERF2                                                  <------NtERF2                                                 <---------RAP2.3(1)                                              --------->ALFIN1          --------->DEAR3(1)                                             <---------SPL7             <---------ANAC46                                            <---------ANAC58           --------->ATERF1(1)                               --------->ANAC58 <---------DEAR3(1)    ------>NtERF2                     --------->ATERF1(1)    <---------ANAC55(1)      --------->ANAC58                    <---------At4g35610     <---------ANAC58         <---------DEAR3(1)                    --------->At4g35610     <---------ANAC46         --------->ANAC58           <------ZmHOX2a(1)   --------->ANAC58--------->SPL7     ----------->HVH21         --------->ANAC58      --------->ANAC46<---------ABI4(1)------>ZmHOX2a(1)   <---------ARR11(3)         --------->ANAC58 <----------DOF2<---------MYB52(1)<------MYB83<------NtERF2--------->ARR11(3) --------->ICU4     <---------ZAT2      <-------GAMYB      <------MYB46(1)<------NtERF2 -------->DOF2      --------->ZAT2     <-----------RAV1(1)--------->MYB59--------->LBD16 >ZmHOX2a(1)      ----------------------->TaNAC69(2)   --------->ATHB12<---------LBD16  <-----------GT1   gtaaagatggtaaggaagatggagctggctcttacgctactctgttgcgtgcggcgatgtttggtcctgagacgccggagaagagagatattactgggtt  12013100                   <---------TOE1(3)             --------->ARR11(3)                                                 <---------GLK1(2)             <---------AHL20(1)                                               <---------YAB1             <---------ARR11(3)                                             --------->YAB1       ----             --------->AHL20(1)                                   <---------AtMYB61             <----         <------ZmHOX2a(1)                                     <----------DOF2--------->ICU4    =====       --------->LBD16                                      ---------->ID1 --------->ICU4       <----      --------->HSFB2a(2)                                   =========================================      <---------HSFB2a(2)                                   <---------------AGL15      ------>ZmHOX2a(1)      <---------LBD16                                      <-----------GT1 <---------YAB1      <----- <<<<<<<<<TBF1     <---------TOE2(3)         <----------DOF2--------------->AGL15    ----------->RAV1(2)   ttcttcttccaggaatatttttaggtttaagacggagactcatcggtctttgaattcgttttctccttttggtgttgatgatgattctcctggtgtttct  12013200  Previous    Next  AGI:  At4g22910.1    Description:  signal transducer. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G11920.1); similar to cell cycle switch protein CCS52a [Lupinus luteus] (GB:AAQ54906.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65426.1); similar to cell cycle switch protein [Medicago sativa subsp. x varia] (GB:AAD22612.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain Cdc20/Fizzy (InterPro:IPR000002) Range:  from: 12012688    to: 12016022    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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