Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  ------->MYC4                ------->PIF5                <-------PIF5                <-------MYC4                <-------MYC3                ------->MYC3                ------->MYC2                <-------MYC2               --------->TGA1a               <---------O2               <---------TGA1a               --------->O2               ======================================MYC_MYB     <---------ANAC58                                  <---------------AGL15     <---------ANAC58                         ------->GAMYB ---------DOF2 --------->ANAC55(2)           --------->MYB46(3) ---ANAC58     =======================================MYC_MYB -->ANAC55(2)  ===================================================bZIP_DOF--------->WOX13(1) ---ANAC58   <---------ALFIN1               -------->P --------------->AGL15 ---ANAC55(2)<------------OsbHLH66         <-----------GT1              <---------ATHB12 ---ANAC46  <---------REM1(2)    <---------ARR11(3)    <----------DOF2--------->GLK1(1) -HVH21    <-----------------PIF3(1)     <---------MYB52(2)           <---------GLK1(1)   gctttaagcgtgtctccacgtgttcacctctactagttcttctactaaccacattttctttttgtagtttggaaatcaattactaaaaaaacaatttgac  12006600                                             <---------HSFB2a(2)                                             --------->HSFB2a(2)                                          <----------DOF2                                     <---------ICU4            --------->ARR11(3)                                     --------->YAB1       <---------AHL20(2)                                     <--------ATHB1       --------->AHL20(2)                      <--                                    <---------ATHB51     --------->AHL20(2)                      <---                                    <---------ATHB12     <---------AHL20(1)                     -----                                <------ZmHOX2a(2)        <---------AHL20(2)              <---------GLK1(1)   tggttttcaatttcaaatagacaattgtatgtggatcaataattcttttggaaaactaaattatttatcttgtttgttttttaaaatttggaactcattt  12006700                               <---------At4g35610                               <---------ZAT2                                                    <---         <---------ANAC46      --------->At4g35610                                               ----  <---------AHL20(2)           --------->ZAT2                                <-----------GT1     ----  --------->AHL20(2)           ----------->RAV1(2)               <---------AHL20(2)             ----- -------AHL20(2)         <---------AHL20(2)                      --------->AHL20(2)             ----- ------YAB1           --------->AHL20(1)                        --------->AHL20(2)            ------- ---->AHL20(2)   ---------->DOF2                                <---------AHL20(2)     ----------->GT1   ttattttaatggtttgtactaaagtatattatcagctgaattcaactacacatactacatgtcaaatttttttaaaaaatcaccatgtttcgaaaaaaaa  12006800                                                                                                   <-                                                                                                   <-          <---------At4g35610                                                                      --          --------->At4g35610                                                                     <-- ------ARR11(3)                        ---------->DOF2                                            --- ----->GLK1(2)                        --------->YAB1                   <---------TOE2(3)          <-- ----->ARR11(3)           <---------YAB1                        --------------->AGL15           ----- ---->RVE1(1)             <---------AHL20(2)                 <-----------GT1                  <------ ---->CCA1(1)         <---------AHL20(2)                 <----------DOF2                     -------- -->AHL20(2)----------->HVH21      --------->YAB1  <---------ICU4   <---------AHL20(2)  <---------TOE2(3)   atcttcttactcatctcacagtattttttttattgtataatcaaagcctaaaattatgtcttttctctattttaagtttttgttttgtttaagaaaaccg  12006900                   --------->KAN4(2)            <---------ANAC46            <---------ANAC58            <---------bZIP60(2)            <---------ANAC58            --------->O2            <---------O2          <---------TGA2(2)         ----------->TGA1       <---------At4g35610       <------ZmHOX2a(1)       <---------ICU4          <---------TOE2(3)   <---------AHL20(2)  <---------YAB1  --------->AHL20(2)--------->GLK1(2) --------CCA1(1)  <---------GLK1(1) --------RVE1(1)  <----------TaMYB80 ------->GLK1(1) <---------ARR14(2) -------ARR14(2) --------->ARR11(3)                                       <---------AHL20(2) ------>ARR14(2) <---------ARR11(3)                                   <------ZmHOX2a(1) -------ARR11(3) --------->ARR14(2)                         <---------ARR14(2)     <---------ALFIN1 < ---->LBD16 <---------TGA1a  <---------YAB1                 --------->ARR14(2)   <---------ALFIN1  -- ---LBD16----------->HVH21--------->ICU4    ----------->GT1<---------GLK1(1)  <-----------GT1    *TSS ->MYB52(1) --------->TGA1a<---------ICU4<------ZmHOX2a(1) --------->GLK1(1)<-----------GT1 <--------   gatatttaatgctgacgtggatattctgattatgaggatgagaggaaggaaaaaataagagaaatctgcctaggaatttatctccacacttctcttatct  12007000                                                                 --------->TOE1(2)                                                                 --------->TOE2(2)                                                         --------->At4g35610                                                       --------->YAB1                                                  --------->AHL20(2)                            ------------------------>ANAC81     ----------->RAV1(2)                   --------->YAB1      ------------------------>ANAC81           --------->ZAT14     <---------ANAC58 --------->YAB1 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        --------->At5g28300     <---------ANAC58<---------YAB1xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        --------->ZAT6       <-- ---------ICU4    <---------AHL20(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ZAT18       ----- ---->ZmHOX2a(1)  --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->At4g35610     ----- -CCA1(2)        --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------At4g35610    ------   cctaatttcttccctccaaatttataataaaaccaaaaaaaaaaaaaaaaaaaaaaatcagaagaaacctgagaagctcacagtaaacacatcttcaacc  12007100                                            <----------DOF2                                      --------->At4g35610                                      <---------GLK1(1)                                      --------->ZAT2       <---------ICU4                 <---------At4g35610   <-------TEIL                  --------->DAG2 ---------RAV1(2)               ---------->DOF2     --------->ZAT6 -->GAMYB                  <------ZmHOX2a(1)<---------DAG2                                         -- ---->AtMYB61             ----------->GT1  <---------DAG2                   <---------ARR11(3)------- --->MYB46(3)       --------->MYB52(1)--------->GLK1(1)                     --------->ARR11(3)-------   acaggttcatacttactgaaaaaaacagaggaaaaaaaggagctcccttttctatctctaagggaaaatgggtagcaagatgttgtttagtttgacaagt  12007200                                                                    --------->HSFB2a(2)                                                             --------->DEAR3(1)                                                            <------NtERF2                                                            --------->ATERF1(1)                                                            --------->DEAR4(2)                                                            --------->RAP2.3(1)                                                           <---------RAP2.3(1)                                                           <---------ATERF1(1)                                 ------>ZmHOX2a(1)         ------>NtERF2                     --------->ANAC58                     --------->DEAR3(1)            --------->LBD16    <------------------------ANAC81------>NtERF2            ------>NtERF2     ------>MYB83                <---------DEAR3(1)                   <-----           --------->DEAR3(1) ------>MYB46(1)            --------->ATERF1(1)          --------->At4g35610    <---------DAG2   --------->ANAC46                   <---------ATERF1(1)           --------->ZAT2    <----------DOF2  --------->ANAC58                   <-----------HVH21             <---------At4g35610 ---->ZmHOX2a(1)<---------MYB52(1)    <----------DOF2  --------->ANAC46               <---------ZAT2 -->ANAC58 --------->ANAC46<---------HSFB2a(1)       ------>ZmHOX2a(1) <------ZmHOX2a(1)      <------ -->ANAC58<---------LBD16  --------->HSFB2a(1) ------>ZmHOX2a(1)    <---------HSFB2a(2)  ---------->CDC5   cctcgacttttctccgccgtttctcgcaaaccttcctcttctttctctccttctcctccgtcgccgtcttcgaggactcaatggactcagctcagccctg  12007300                                              ----------->RAV1(1)                                              --------->RAP2.6(2)                                           --------->ANAC58                                           --------->ANAC58                     --------->ZAT14                                         ---------->DOF2       --------->ARR11(3)                                      --------->At4g35610   --------->YAB1     <----------DOF2             <---------HSFB2a(2)   <---------ANAC46        <---------ATHB12    <---------DAG2      --             --------->HSFB2a(2)   <---------ANAC58      --------->WOX13(1)<---------ZAT18       ---- ----HSFB2a(2)                     <---------ANAC58 ------->GAMYB<-----------------AGL1          <--- ---LBD16 <----------DOF2     <-----------RAV1(1)----------->RAV1(1)--------->ATHB12             ----   gaaaatcgatttctttgagaagaagagtcttcttgttgcctgctaaagccacaacagagcaatcaggtcttgatttggccactttagtctcgatttcgaa  12007400                                                                                                   <-                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                                <----     <----------DOF2                                                                           <-----   --------->LBD16                                                                           <-------   ------>NtERF2                  <---------ARR14(2)                                      --------->ARR11(3) ------->ANAC46                   --------->ARR14(2)     <---------GLK1(1)                --------->AHL20(1) ----->HSFB2a(1)        --------->ANAC58                 --------->GLK1(1)           <---------TOE2(3) ------ALFIN1           --------->ANAC58               <---------ANAC58   <----------DOF2 <---------ARR11(3) ----->ZAT6           ---------->DOF2                  <---------ANAC58  <---------DAG2<------ZmHOX2a(1)   cactccgccttagttttctgtttacaaagccatttggattcgaatttgttcacaattgggtttccaaagtttgagccttttgaaatttaggatatattat  12007500  Previous    Next  AGI:  At4g22890.1    Description:  PGR5-LIKE A. similar to PGRL1B (PGR5-LIKE B) [Arabidopsis thaliana] (TAIR:AT4G11960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63637.1); contains domain Zinc beta-ribbon (SSF57783) Range:  from: 12006997    to: 12009531    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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