Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <------NtERF2                                                                                   --------->LBD16                                                                                   ----------->GT1                                                                                  <---------ANAC46                                                                                 <---------LBD16                                                                                <---------ANAC46                                                                           <-----------RAV1(1)                                                                    --------->HSFC1(1)                                                                    --------->HSFB2a(2)          <---------At4g35610                                       <---------HSFC1(1)          --------->At4g35610                 --------->ALFIN1      <---------HSFB2a(2)             < --->ZmHOX2a(2)                             <---------ANAC46   --------->ALFIN1<---------MYB46(3)   - ---->ARR14(2)                      <---------MYB46(3)         <---------ZAT6--------->ALFIN1      -- -----ARR14(2)                  <---------MYB46(3)         --------->ZAT14<---------ARR11(3)   ------ -ZmHOX2a(1)    --------->MYB46(3)  <---------DEAR3(1)     <---------ZAT14--------->ARR11(3)   <-----   tcgatgagagtaagatgaacaaaccttgagagattgggtcgatgcgaagtggagaactcagagaagtgttcgagaagatgttgggcgggaaaacttgaat  11993600  <---------WRKY18(1) --------->WRKY45 --------->WRKY12 --------->WRKY38(1) ----------->HVH21                                <---------ZAT14 ---------MYB52(1)                               --------->ALFIN1 -------->DOF5.7(2)                        <----------DOF2 ------->At4g35610                     --------->WRKY38(1)                   --------->ANAC58 --->ARR14(2)       <-------PIF5    <---------ZAT6<-------TEIL               --------->ANAC58      <- ----ARR14(2)       ------->PIF5    --------->ALFIN1                   <---------YAB1<---------AHL20(2)   ccgttgactgcgataaacagctcgtggtagaagacgaagtgttgactttaggtgcagggtctctattggagttgtgatcacgctcattttttttctttgg  11993700                                                                                                  ---                                                                                                  <--                      --------->At4g35610                                                         ---                      <---------At4g35610                                                        <---               --------->GLK1(2)                                                         <---------PCF2              <---------GLK1(2)                                                    --------->GLK1(2)              --------->ARR14(2)                                                   --------->ARR14(2)        <----------DOF2                           --------->LBD16                  <---------ARR14(2)       ------>ZmHOX2a(2)                         <---------HSFB2a(2)              <---------GLK1(2)     --------->ARR11(3)                          --------->HSFB2a(2)        <-------TEIL----------->HVH21     <---------ARR11(3)      --------->ALFIN1   <---------LBD16            --------->GLK1(2)  ------- ---------DOF2<---------ARR14(2)             <---------GLK1(1)---------->DOF2    *TSS--------->TOE1(2)   actttgtgatctttcagattcttcagaagaagtggcgaaactctgagagttctgggaaatggaagaaagagggagagattcagagaatctgggacccgag  11993800                                                                   <---------ALFIN1                                                                  --------->ZAT18                                ----------->HVH21                <<<<<<<<<<<<<<<<<LFY                                <---------ETT(1)                 >>>>>>>>>>>>>>>>>LFY                  ------>MYB46(1)                               --------->PCF2          ------->TEIL                  ------>MYB83 --------->DEAR3(2)       --------->HSFC1(1)           ----------->GT1  <-----------HVH21>>>>>>>>>MYB98                       <---------HSFB2a(2)      --------->ARR11(3) <-----------RAV1(1)       --------->ANAC46             <---------HSFC1(1)       <---------ARR11(3) ------>ARR14(2)  --------->MYB52(1)                    --------->HSFB2a(2)     --------->YAB1 -------ARR14(2)<---------MYB59--------->MYB46(3)      <-----------------AGL1  <---------TOE1(3)   -- ------>GLK1(2) <---------MYB111(1)                    <-----------------AGL2  <---------TOE2(3)   <- ------GLK1(2)  <---------MYB46(2)                     <---------LBD16         <---------YAB1     <-- -->LBD16     ------->TEIL ----------->HVH21         --------->GLK1(2)     <----------DOF2        ---   aatctgtcgcatcatcaacctaacaaaacccgacccgacccagttagagtttaagtttctggaaatggcccactgggctttaagataatgtatatttcaa  11993900                                                  <---------ZAT6  --------->AHL20(2)                                              --------->ZAT14    --------->AHL20(2)                                              <---------ZAT14    <---------AHL20(2)             -----                                             <---------ANAC46   --------->ICU4             --------->AHL20(2)                                           <---------ANAC46     <---------ATHB12        --------->AHL20(2) <---------YAB1                         <-----------RAV1(1) ------------>CBF      ----------->GT1 ------->YAB1                      <---------AHL20(2)      --------->ANAC46      <---------TOE1(3) --------ICU4                     --------->AHL20(2)       --------->ANAC58      <---------TOE2(3) -------ATHB51                    --------->AHL20(1)       --------->ANAC58   <<<<<<<<<MYB98  ------- ------>ICU4  <---------AHL20(2)  <---------AHL20(1)  ---------->DOF2<---------AHL20(1) --------->YAB1   attatgattttcttattttaaaactgatatttggaatataatgtgttgtgtagtgagaaagacgcaattaatatacttaagttagggtaataaaaaaatc  11994000                                                                      --------->ANAC46                                                                      --------->ANAC58                                                                      --------->ANAC58               ---------->DOF2                                      <---------ALFIN1            --------->ANAC58                             <----------DOF2          ---------->DOF2 <---------ATHB12 --------->LBD16         <---------REM1(2) ---------->AtSPL3       *TSS             --------->HSFB2a(2)     ------>ZmHOX2a(1) -->GLK1(2) --------->ANAC58              <---------HSFB2a(2)<----------DOF2         <---------YAB1   ggtacaagactacaaagcaaagacacaaatcaaggagaaaacttccacaaattgtctctctttctttcctacacaccaatttgttttgtgattctttcga  11994100                                <---------GLK1(1)                               <---------ARR14(2)                               <---------GLK1(2)    --------->ARR14(2)                               --------->ARR14(2)   --------->GLK1(2)                        <------ZmHOX2a(2)      --------->LBD16               <---------ZAT6                     --------->LBD16           ----------->GT1    --------->ARR11(3)                    <---------HSFB2a(2)      <---------LBD16      <---------ARR11(3)                <---------GLK1(1)  <-----------GT1  <---------ARR14(2)  >>>>>>>>>>>>>>>>>LFY    <----                --------->ARR14(2)<-----------GT1  --------->GLK1(1)  <-----------GT1           -----        <----------DOF2<-----------HVH21   <-----------GT1      ----------->ARR10   <----------DOF2   ttgcattcttctttttcgaattcccgatcactggattttcccgtttaaccggaaaatccagtggattagattttacccagtgttatctttttggattgga  11994200                                        <---------ANAC46                                       <---------ZAT2                             <---------ARR14(2)                       <---------ARR14(2)                  --------->ANAC58     --------->At4g35610                  ----------->GT1      <---------At4g35610           <---------ANAC55(2)      <---------ZAT2           <---------ANAC46  --------->ARR14(2)          <---------LBD16   <---------MYB52(1)       <-------GAMYB  ---------->DOF2  --------->ZAT2                                   <---------ANAC58       <-----------HVH21--------->MYB52(1)                                <---------DAG2<---------ANAC46 -----ARR14(2)    --------->ANAC58  --------->At4g35610                   <----------DOF2   <-------- ---->ARR14(2)  <------ZmHOX2a(1)   <---------At4g35610            ---------->DOF2      <---------ANAC58   ttcgatgactgttacggaggacgaaaaaccggttcttgagctgctggtgagagttgaagacgacgatgagaaagggccttatgtgaaattgagtgaggtt  11994300                                                            <---------AtMYB61                        <------ZmHOX2a(1)                <---------ARR14(2)                --------->YAB1                           --------->ARR14(2)                     <----              --------->GLK1(2)               <---------GLK1(2)                                 <----        --------->WRKY18(1)           ---------->DOF2 <------NtERF2               <----------DOF2   ---------->DOF2   <-----------RAV1(2)     --------->ATHB12               <----------DOF2  <------- -TOE2(3)    --------->YAB1       >>>>>>>>>TBF1   <-----------HVH21   --------->WRKY18(1)   <--------   ttagagaaaggtcaagaatcagagcaggagaaggaagaagaaaagactgattcgtcgcggttttggttttgggtcaagctttctcttttattcgcctttc  11994400                                                                                <-------TEIL                  <-------GAMYB                                                --------->GLK1(2)           <-------GAMYB                --------->YAB1         <-----------GT1--------->ARR14(2) -----ANAC58   <---------ANAC46    <-------TEIL               <-----------GT1 <---------ARR14(2) -----ANAC58 <---------ANAC46  ------>ZmHOX2a(2)   <---------TOE2(3)          <---------GLK1(2) ---DOF2  <-----------RAV1(1)--------->ARR14(2)    <---------TOE1(3)    <---------ICU4     <---------DAG2 -DAG2    <---------MYB46(3) <---------ARR14(2)    --------->DAG2       --------->YAB1     <---------   ttgctgcattggctgttgtgggttacatttggatcggtccattgatcatggataaggtttgattttaacttccatcatcagattcagttttagctttatt  11994500  Previous    Next  AGI:  At4g22840.1    Description:  bile acid:sodium symporter family protein. similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT4G12030.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO63603.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) Range:  from: 11991508    to: 11993781    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g22850.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G12000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63604.1); contains InterPro domain SNARE associated Golgi protein (InterPro:IPR015414) Range:  from: 11994025    to: 11996240    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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