Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------RVE1(1)      <---------GLK1(2)      --------->ARR11(3)      <---------ARR11(3)    ----------->ARR10 <------ZmHOX2a(1) --------TOE2(3)                                           --------->AHL20(2) ------>YAB1                                            --------->ATHB51 -------ICU4                     -------->P             --------->YAB1 --->YAB1                  --------->SPL7               <--------HAHB4 ------>AGL15             <---------MYB52(1)            <---------ICU4                            --- -------AGL15            <---------SPL7                --------->ICU4                             --- >TOE2(3)                --------->LBD16         --------->At4g35610                              --- ------->AGL3           <---------ANAC46         <---------At4g35610                      --------->REM1(1)   taaggatagattttttaaaaaatactccgtatgctaaccagaaaacattttagctccataattacatagaagttttaatctaatacagtgctacaattca  11958100                                                     --------->YAB1                     --------->AHL20(2)                                          <---------At4g35610                           <---------AHL20(2)                                      --------->GLK1(2)                           <------ZmHOX2a(1)                                --------->TOE1(2)   <---------YAB1               ----------->GT1                               <---------ANAC55(2)--------->GLK1(1)              --------->ANAC58                               --------->ANAC58  <---------ARR11(3)         ----------->HVH21                               --------->ANAC55(2)<---------GLK1(1)         --------->ETT(2)           <-----------GT1 --------->ANAC58      --------->ARR11(3)      ------>ZmHOX2a(2)  --------->GLK1(1)        --------->ANAC58    --------->ANAC58          ================HOX2a_HOX2a ------>ANAC46         --------->ANAC46 --------->YAB1      <---------YAB1  <---------ETT(2) ------>ANAC58   --------->YAB1--------->ANAC58--------->ANAC58    --------->GLK1(2)    ----------->TBP ------>ANAC58  <---------YAB1<-------TEIL--------->At4g35610 ---------->DOF2    --------->ANAC58   acgcatttctattttactataataaacacaagtacgtaagaatcagcacaagatatcatactataaaagaatcgatcgtcgacaggaaatataaatacta  11958200                                                             --------->AHL20(2)           --------->TGA1a                         <---------DEAR3(2)           --------->O2                            <------MYB46(1)----------->GT1          ----------           ===========================bZIP_DOF     <---------MYB46(3)                      <---------           <---------O2                            <------MYB83   --------->TOE2(3)      ---------->DOF2         <---------ALFIN1                         <---------DEAR3(1)                 <<<<<<<<<MYB98      --------->ARR14(2)   <----------DOF2       <---------ORA47(1)          <---------ALFIN1    --------->ANAC58      --------->TOE2(3)   <---------AtMYB61  ----------->GT1   ----------->GT1    --------->ANAC58<-----------GT1      <---------AHL20(2)  <---------AHL20(2)    <---------YAB1   tattacaagaaccacgtctatattactacctttaatcgtgtattttttttggtcggtttgaatttaaatgttaaaatccacacttatgttaaaaagaaaa  11958300                                                                         --------->ANAC58                                                                    --------->ANAC58                                                           ---------->DOF2                                                          <---------AHL20(2)                                                     <---------ARR11(3)  --------->ANAC58                                                     --------->ARR11(3)---------->DOF2   ------------>CBF                                ----------->GT1  --------->ANAC58 ->GT1                                        ---------->DOF2     ---------->DOF2 -ID1          ----------->GT1           ---------->DOF2  --------->AHL20(2) ---------->DOF2   aaaaaaacaatttgatttggaaaaacatttgaaaaatacaaatgaaagaaaagaagataataaaagagtaaagcaaagcaaaagcagagaataactctta  11958400                                                                          <---------ICU4                                                                     --------->ARR11(3)                                                                     <---------ARR11(3)                                                                    --------->YAB1                                                                   ----------->ARR10                                                                   --------->ICU4                                                                 ---------->DOF2--------->ANAC58                          --------->ARR14(2)                  --------->ANAC58  --------->ANAC46                   <---------MYB55(2)                      ------>ZmHOX2a(1)    --------->ANAC58                 --------->ANAC58                       =====================HOX2a_HOX2a                 --------->ANAC58                       ------>ZmHOX2a(1)<---------YAB1             --------->ANAC58                          <---------ALFIN1--------->YAB1             --------->ANAC58      <------------CBF  ------>ZmHOX2a(1)<------ZmHOX2a(2)             --------->AtLEC2   ------------>CBF     ========================HOX2a_HOX2a      <----------DOF2  --------->AtMYB61       <<<<<<<<<TBF1  --------->ANAC58  --------->ANAC55(2)   <----------DOF2 --------->MYB46(3)      <-----------GT1 ==================HOX2a_HOX2a           <-   attcgcttctttgccaagcaaaccaccaaaacctctcaattgttttttcttcttcctcctccttaagcaaagatcatcattcacgaaatgtctgattcga  11958500                                               --------->LBD16                                              --------->HSFB2a(2)                                          --------->GLK1(1)                                          <---------GLK1(1)                                          --------->ZAT2                                          <---------ZAT2                                          --------->At4g35610                            --------->KAN4(2)                                          <---------At4g35610                            <---------ICU4                                      --------->ETT(1)                 --------->CCA1(2) --------->YAB1                                  <---------AtMYB61                   --------->ARR14(2)<---------KAN4(1)        ---------->DOF2    <------ZmHOX2a(1)  <---------HSFB2a(2)     <---------ARR14(2)--------->KAN4(1)   --------->LBD16    ------>ZmHOX2a(1) <------NtERF2           <----------DOF2        <---------KAN4(2) <---------LBD16  --------->ARR14(2)  <---------DEAR3(1)      --------->At4g35610     --------->YAB1 ----------GT1    <---------ARR14(2)<-----------HVH21     --------->MYB52(1)   <---------ETT(1)   ttcaccggagaaaagtttcgaatcctgtaggaaatggaggtcggagctccagaacaagacgaacagctttcagatatgtttccgacaagaataatcgctc  11958600                                                                                            ---------                                                                                         --------->DEAR3(1)                                                                                      --------->AtMYB61                                                                                     --------->MYB46(3)                                                                                   ------>NtERF2                                                                                  ----------->HVH21                                                                                  --------->DEAR3(1)                                                                                 --------->ORA47(2)                          --------->HSFC1(2)                 ----------->HVH21   --------->RAP2.3(1)                          <---------HSFB2a(1)             ------>NtERF2          --------->ATERF1(1)                          <---------HSFC1(2)           --------->DEAR3(1)        ------>NtERF2                          --------->HSFB2a(1)         <------NtERF2              <------NtERF2                         ----------->ARR10           --------->ABI4(1)          <---------RAP2.3(1)                         <-----------ARR10           ------>NtERF2              --------->LBD16                   --------->HSFB2a(2)              <---------ALFIN1           <---------ANAC46           <---------TOE2(3)                        --------->DEAR3(1)         <---------DEAR3(1)           <---------TOE1(3)                     --------->ANAC46              <---------RAP2.3(2)    ----------->GT1<---------HSFB2a(2)    <---------ZAT6 ----------->HVH21    <---------LBD16   taaatcgagtaataaggttttcgagagaagcttctcagagccgagtcttaatcgccaccgcgacggacagagtaatcacttgcggcgaccatcgccgatg  11958700                                                          <---------TOE1(3)                                                <---------GLK1(2)                                                <---------ARR14(2)                                               <------ZmHOX2a(1)                                      <---------ANAC58    <---------TOE2(3)                                      <---------ANAC58 <----------CDC5                                  --------->DOF5.7(2) <----------DOF2                                ======================HOX2a_HOX2a                                ------>ZmHOX2a(2)--------->ARR14(1)               <---------MYB46(3)                               =======================HOX2a_HOX2a               <-------GAMYB                         --------->MYB52(1)  <---------TOE1(2)                 <---------MYB46(3)   - >DEAR3(1)      >>>>>>>>>TBF1  <------ZmHOX2a(2)--------->ARR14(2)           --------->LBD16 <-------   agaggtttaccgatggaagaagaaacaaaaccgatcgtttacttgcctaggattcgctctgaggttttcgcttcgtctccgtcgttgttgaacttatatt  11958800                             <-----------HVH21                          <---------ICU4                       --------->YAB1                                   --------->ATHB12                      <---------ATHB12               <-----------GT1   --------->ICU4                    --------->WOX13(1)             <---------AHL20(2)  <---------YAB1                  <------ZmHOX2a(2)        <---------ANAC58          --------->YAB1               <-- -------->DEAR3(1)<---------ATHB12         <---------ANAC58         <-------TEIL                 <--- ---TaMYB80<---------At4g35610         <---------MYB52(1)  <---------ATHB12                    ------   cgccctcgtcttcatctccgatcaatcaagaggtcagagtcgtttgcttctattttttcaaatcaacaaattcatgatttcaactctgtaagagaattca  11958900                 <---------AHL20(2)               <---------AHL20(1)               --------->CCA1(2)                  --------->AHL20(1)      <---------ZAT18                             <---------AHL20(2)                               --      --------->ZAT18                          --------->AHL20(2)                                  <- -------ICU4  --------->ARR11(3)            --------->YAB1          --------->AHL20(2)             <- ------YAB1   <---------ARR11(3)           <---------YAB1        <---------ICU4                    -- --->YAB1 ---------->DOF2<-----------GT1  --------->AHL20(2)  <-----------GT1     ---------->DOF2<---   tcatttagtccacaaagatttaaaagtttacagtttaagcctaatattataaaatatttcaatataaccattatataggctgaacaaagagttttaagtt  11959000  Previous    Next  AGI:  At4g22760.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to CRR4 (CHLORORESPIRATORY REDUCTION 4) [Arabidopsis thaliana] (TAIR:AT2G45350.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64316.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11958488    to: 11962881    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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