Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      ---------->DOF2                      --------->At4g35610                                               --------->REM1(1)                      <---------At4g35610                                           <---------At4g35610                     ----------->RAV1(1)                                           <---------MYB46(3)                   --------->At4g35610                                            <--------P         ---------->DOF2         --------->YAB1                                  <-------GAMYB     ---------->DOF2 XXXXXXXXXXXXXXXXXXXX>MIR834                          --------->ZAT18 ----ZmHOX2a(1)    <---------At4g35610 <<<<<<<<<<<<<<<<<LFY        <------ZmHOX2a(1)--------->At4g35610 -ZmHOX2a(1)    <------ZmHOX2a(1)----------->GT1     --------->ALFIN1     <---------ZAT18           <   ggagaagaaaagaaaggaggaagcagcagtagcaatggtaaagacaatggcaagagtgagggaaatggaggaagagcgaactcggttgctgcatcaatgg  11917700                                                                              <---------AHL20(2)                                                                             <---------AHL20(2)                                                                             <---------AHL20(1)                                                                         <---------AHL20(2)                                                                     <------------------------ANAC81           <---------ANAC46                                         <---------AHL20(2)  <<<<<<<<<TBF1           <---------ANAC58                                     ------>MYB46(1)  <-----------GT1           <---------ANAC58                                     ------>MYB83--------->ICU4       <---     <------MYB46(1)                        ----------->GT1   <---------MYB59--------->AHL20(2)  <---     <------MYB83                     <---------AHL20(2) --------->YAB1--------->ANAC55(2) <<<<<<<<<TBF1 ---------YAB1                   --------->ICU4<---------AHL20(2)  --------->AHL20(2)<<<<<<<<<TBF1   ctatgtttggtttgcttgcaagtctcgtcttcgtaatgttttaatttagttatttgtattcataccaaattttatgtaatttttttcttcttcttcttcc  11917800                                       <---------TOE1(2)                                       <---------TOE2(2)                                       ------->TEIL                                       <-------TEIL                                       --------->SPL7                  --------->LBD16    --------->TOE2(2)                 <---------ANAC58    <---------SPL7                 <---------ANAC55(2)<---------ANAC58                 <---------ANAC46   <---------ANAC46                 <---------ANAC58   <---------ANAC55(1)              --------->GLK1(2)     <---------ANAC58              --------->ARR14(2)    --------->ANAC55(2)       ---------->DOF2              <---------ANAC55(2)   <---------ANAC58                --------------->AtSPL8                <---------YAB1     ---------   <---------ANAC58   ------->TEIL <---------------AtSPL8            <----------DOF2      <----------DOF2 -------DOF2  <---------ARR14(2)   --------------->AtSPL3      <-----------GT1            <---------DAG2 ------DAG2  <---------GLK1(1)     <---------------AtSPL3    <---------AHL20(2)        <-----------GT1   tttttccttgaaagaaaatccgtgaacccaaaacaattacgtacgtttttgagtctataacattttatctgcattattttagggtgttttaactttattg  11917900                           --------->LBD16                          --------->ANAC46                          --------->ANAC58                          --------->ANAC58                         <---------LBD16                             <---------AHL20(2)             <----------DOF2            ------>NtERF2                --------->AHL20(2)      <-----------GT1<---------PCF5 --------->ANAC46                --------->AHL20(2)      --------->MYB52(1)<---------ALFIN1----------->RAV1(1)         <---------AHL20(2) --------->ICU4      --------->PCF2 --------->ANAC58  <---------MYB52(1) >ATHB12 ------->GAMYB--------->PCF5--------->ANAC58 <---------DEAR3(2)                            --   ggccttattaacgggcttatagtggcccacggaaaaactcgccaacaaaataagccggtttgtaaactaattttattccaatttcaacattttggttttt  11918000                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                      <---------ANAC58                                                 <---------DEAR3(1)                                    <---------DEAR3(2)<---------ANAC58                        --------->DAG2         --------->LBD16                               --------                       ---------->DOF2     --------->ARR14(2)                              *TSS                    --------->AHL20(2)     <---------ARR14(2)                           ---------->DOF2              --------->LBD16--------->ANAC58 --------->TOE1(2)                     <<<<<<<ZML2             --------->ANAC46--------->ANAC46 --------->TOE2(2)                  --------->HSFB2a(2)            <---------LBD16  --------->ANAC58--------->DEAR3(2)            <---------------AtSPL8  <- ---------->CBF    --------->AHL20(2)  ----------------->AGL1 <---------MYB52(1) <---------HSFB2a(2)   gttcaattcgattttccgcaaataaaaaagcacgaagccggtccaaaaccggcgatgcttatccgtttagaaatgagaaggtactagaacaaaagcctta  11918100                                                                                               ======                       <---------HSFC1(1)                                             <---------ALFIN1                       <---------HSFB2a(2)         ---------->DOF2                   ------>MYB46(1)                   <---------ARR14(2)          <----------ID1                        -------->P======                   --------->ARR14(2)--------->ANAC46                                ------>MYB83<---      <----------DOF2  --------->HSFB2a(2) ---------->DOF2        <-----------GT1  --------->AtMYB61 ->TOE2(3)         <---------GLK1(2) --------->ANAC58         <----------DOF2<---------MYB59   ------ ----------GT1 --------->LBD16       --------->ANAC58<----------ID1 --------->ZAT6--------->MYB46(3)   ttcacttccttttgttccccaaattctcgaaatcgaaacacgacttaaaacgaaaaagacgagacttttaacactcagacctaaaccaacactcttcctc  11918200                            <---------GLK1(2)                            --------->ARR14(2)                            --------->ARR11(3)                            <---------ARR14(2)                            <---------ARR11(3)                        <---------At4g35610                   ------>ZmHOX2a(2)                                     --------->ARR11(3)                   ==============================HOX2a_HOX2a             <---------ARR11(3)                  <------ZmHOX2a(2)                               --------->At4g35610                  ===============================HOX2a_HOX2a      <---------At4g35610                 <---------ARR14(2)                             --------->ZAT18                 --------->ARR14(2)                      --------->HSFC1(2) ========================HOX2a_HOX2a                     <---------HSFC1(2) =========================HOX2a_HOX2a                   ------->TEIL ---------->DOF2            ----- -------DOF2    <---------SPL7            <------ZmHOX2a(1)     <---------ZAT18     <------ZmHOX2a(2) >ZmHOX2a(1)   --------->DEAR3(1)     ---------->DOF2--------->ANAC46--------->MYB52(1) --------->AtLEC2   tttctatctctctctcgccgatcggaagcagatttttctcaaaaggatggattcaacgaagcttagtgagctaaaggtcttcatcgatcaatgcaagtct  11918300                                                                                                <----                                    <---------ANAC46                                           <-----                                    <---------ANAC55(1)                                        ------                                    <---------ANAC58                                          <------                                    <---------ANAC55(2)                                       <------                                    --------->ANAC55(2)                                    --------->ALFIN1                                    <---------ANAC58                                       <---------AtMYB61           --------->ZAT6     ------>ZmHOX2a(1)          <----------DOF2                 <-----------RAV1(1) ------>HVH21       ------>ZmHOX2a(1)--------->LBD16   <-------TEIL                     <---------DEAR4(1)   gacccttcccttctcactactccttcactctccttcttccgtgactatctcgagaggtactttcgatctaatctctatgcttagtttgtgtctgtggtgg  11918400                                                                        <-----------RAV1(1)                                                                     <---------ARR14(2)                                                                     <---------ARR11(3)                                                                     --------->ARR14(2) ---GAMYB---------->DOF2       <---------YAB1                        --------->ARR11(3) ----MYB46(3)        <----------DOF2      <---------ANAC46           --------->GLK1(2) --->MYB55(2)       ------>ZmHOX2a(2)    --------->DAG2   ------>ZmHOX2a(2)             <-----------GT1 ---AtMYB61       --------->ARR11(3)    <---------ZAT14  --------->GLK1(1)         ----------->GT1 ---ANAC46        <---------ARR11(3)    ---------->DOF2 <---------ARR11(3) <---------ANAC46  <-------   ttaagagttagtaaagtattgatctttgagtctatgtttgtgtaaagtgtattgccctgatctctagcgaaaatctgttgtggaattgataaacccttta  11918500                                                                                   <----------DOF2                       <----------DOF2                                            ------>ZmHOX2a(2)                   ------>ZmHOX2a(1)                                            --------->ARR11(3)               --------->ARR11(3)                                               <---------ARR11(3) ---DOF2   ---------->DOF2                                             ---------->DOF2         <-----   ctctcttgtggatgaaagttcctgtctttggttttgggttcttagaatttgtgtctgtgatgttttagtttagtaaagtattgatctttgagtctctgtt  11918600  Previous    Next  AGI:  At4g22666.1    Description:  similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G22630.1); contains InterPro domain Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); contains InterPro domain Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140) Range:  from: 11917068    to: 11917890    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g22670.1    Description:  ATHIP1 (ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 1); binding. Identical to FAM10 family protein At4g22670 [Arabidopsis Thaliana] (GB:Q93YR3;GB:O49648); similar to ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN) [Arabidopsis thaliana] (TAIR:AT3G17880.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO70312.1); contains InterPro domain Heat shock chaperonin-binding (InterPro:IPR006636); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 11918091    to: 11920921    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version