Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------ALFIN1                                                 <------------CBF                          <---------AHL20(2)                               ---------->DOF2  --------->ATHB12                           --------->AHL20(2)                           <-------GAMYB       <---------YAB1                          -------------- ->NtERF2                 ----------->GT1    <---------AHL20(2)             ------------>CBF --->DEAR3(1)        <-----------GT1        --------->ICU4<---------ALFIN1<---------ATHB12 --------->YAB1 --->RAP2.3(3)     <---------WOX13(1)       --------->AHL20(2) <---------YAB1  --------->GLK1(2)<---- -->DEAR3(2)     --------->ATHB12     <------NtERF2     ----------->RAV1(1)--------->YAB1<-----------TBP ->At4g35610   <---------WOX13(1) <----------ID1--------->ATHB51      ------------>CBF---------------   actcaagtctcacccagattgattaactcggttaaaaggccgaatatttattattgggccacactgttatagcccaataacaatctgttccatttatatt  11807300                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                             <---------ANAC55(2)              <---------HSFC1(1)                                          <---------MYB52(1)                  --------->HSFC1(1)       --------->At4g35610            <------ZmHOX2a(2)                   <---------GLK1(2)       <---------At4g35610           <---------ARR14(2)       --------->YAB1  <---------HSFB2a(2)   <-----------HVH21                 --------->ARR14(2)<-----------GT1  --------->ANAC58         <--- ->AGL15                         <-----------GT1     <---------KAN4(2)  --------->ANAC58         ---- -------GT1               ------>ZmHOX2a(2)  --------->ANAC55(2)    --------->ANAC46             <--- -->AGL3             <---------WOX13(1)------>ZmHOX2a(2)     <---------ICU4   --------->HSFB2a(2)>>>>   acttctgtcagcagtattcagtaattgatctgtattcacgatccgatacttatcgaataaccattaataccctcaagcttctcgaagcaaactataaacg  11807400                  <---------ARR14(2)        <---------REM1(2)    --------->GLK1(2)                                                <---------ANAC46    --------->ARR11(3)                                              <------NtERF2    --------->ARR14(2)                                          <---------ZAT2    <---------ARR14(2)                                          <---------At4g35610    <---------ARR11(3)                                          --------->At4g35610--------->ANAC58 ------ANAC46  --------->ANAC55(2)                              --------->ZAT2    --------->DAG2 ------->GT1   <---------ANAC55(2)       --------->CCA1(2)      ----------->RAV1(2)--------->ANAC58 ------ANAC55(2)  --------->ARR14(2)<---------ZAT14           <-----------RAV1(2)---------->DOF2 >>>>CAMTA3  <------ZmHOX2a(1)      ---------->DOF2      ---------->DOF2   ----------->GT1  <--------   cgtgaaaatctacaaggacgtattcgacattccacgagtaaagagatgagttctgaagttaaagccagctggcgaagaagtaaaaaagcaaatagattag  11807500                                                            ----------->RAV1(1)                                                            <---------DDF1                                                           --------->DEAR3(1)                  ------                                                           --------->At1g77200             ------>MYB46(1)                          --------->ANAC46                 --------->DREB2C(2)             -------->P                          --------->ANAC58              <---------ALFIN1--------->ATHB12   ------>MYB83            ------->GAMYB --------->ANAC58            ----------->RAV1(1)                ------->GAMYB     <----------ID1     ---------->DOF2         <---------ICU4          <---------ICU4   --------->AtMYB61     --------->ANAC58  ------>MYB83          --------->YAB1--------->DEAR4(1)           --------->MYB46(3)     --------->ANAC58  ------>MYB46(1)      --------------->AGL15      --------->ICU4   <---------MYB52(2)     --------->ANAC46  -------->P           <---------------AGL15      <---------YAB1   <---------MYB55(2) -GLK1(2)  <---------ALFIN1                <-----------------AGL1    --------->YAB1   <-----------GT1   ccaaaatacgacaacaccctctacctacaagccatagataccatgactcataagggcaacaccgacatttgtcatcatttgataaatctaaccaaccctg  11807600     <---------ARR14(2)     --------->ARR14(2)     --------->KAN4(2)    --------->KAN4(1)    <----------TaMYB80                                        --------->CCA1(2)                 <----   ---------->TaMYB80                                        <----------ID1                     -----   <---------KAN4(2) ----------->GT1                     ---------->DOF2*TSS                --------- ----->HVH21<----------DOF2---------->DOF2      <------ZmHOX2a(1) --------->ICU4<------ZmHOX2a(1)----   aagggcatattcgtctttccaaatagttataaagagacagagacgaagaaggagagagagaaagagacaagattagagaagaggataagagagagaaaga  11807700                                     <---------ANAC58     --------->GLK1(2) <----------DOF2                      ------>ZmHOX2a(1) -----ARR11(3)       ---------->ID1  <---------ANAC46      --------------->AGL15              ------- ---->ARR11(3)      <-----------GT1  <---------ANAC58      --------->TOE1(3)    <---------ANAC58 ->DOF2   ---------->ID1     <----------DOF2 ---------->ID1--------->TOE2(3)    <---------ANAC46 ----->CCA1(2) <----------DOF2  <-----------RAV1(1)   <-----------GT1           <---------ANAC58   <-   tatagagaatttgttgtctttttttctttttcttttgtggggtatttgtttttttttttctccttaaaaagtttttttttttgtgtgtatgaaaaaaaaa  11807800                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                   --------->ARR14(2)                                   --------->ARR11(3)                                   <---------ARR11(3)                                   --------->GLK1(2)                                   <---------AGP1                                   <-----------ARR10                                   <---------ARR14(2)                                  <------ZmHOX2a(1)                  --------->ARR14(2)                           <---------SPL7                            --------->GLK1(2)                           ----------->HVH21                         <---------ARR14(2)                          --------->ETT(1)                        XXXXXXXXXXXXXXXXXXXX>MIR169G*      --------->GLK1(2)  <------NtERF2                       <---------ANAC58                  ------ --->DOF2               <-----------HVH21  ---------->DOF2   <---------ANAC58   --------->ZAT2<------ ---------DOF2<---------ETT(2) <-----------RAV1(2)       <----------DOF2<---------ETT(1)     --------   gctttgaaattctctctcgacaatggtgtcggaccaggatctagcgaaaggagtcgagactttgcttcgacaatccgaccctagctctctcacatcgtta  11807900                                                                              --------->ARR14(2)                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)                                                                              <---------ARR14(2)                                                                         ===================HOX2a_HOX2a                                                                         ================HOX2a_HOX2a                                            --------->LBD16             --------->AGP1  --------->LBD16                                          <---------LBD16           <------ZmHOX2a(2)  <---------ANAC58                                       --------->AtMYB61            =====================HOX2a_HOX2a                           <<<<<<<<<MYB98--------->MYB52(1)         ========================HOX2a_HOX2a                     <---------At4g35610----------->HVH21         <---------GLK1(1)    <---------ANAC58              --------->At4g35610     --------->ANAC46            --------->GLK1(1)  ------>ZmHOX2a(1) ---->DOF2 --------->At4g35610 <---------ZAT6                <---------At4g35610  ------>ZmHOX2a(1) ---MYB52(1)  --------->ZAT2  <---------TOE2(3)            --------->YAB1<------ZmHOX2a(2)      ----- ->TOE2(3) <---------At4g35610<---------TOE1(3)         <----------DOF2--------->At4g35610--------->ZAT2   agcagtattgttcagcagcttgaagctaagttagggttagacctcacggagaagacgactttcatcagagatcagatcaatatcctcctccgtgctcacc  11808000                                                                 --------->At4g35610                                                             ------>NtERF2                                                            --------->RAP2.3(3)                                                            --------->RAP2.3(2)                       --------->At4g35610                  --------->DEAR3(1)                    ------>NtERF2                          --------->RAP2.3(1)               --------                   --------->DEAR3(1)                     --------->LBD16        --------->GLK1(2)                  <------NtERF2                           ------>NtERF2          --------->ARR14(2)                  --------->ATERF1(1)                     <---------ATERF1(1)    <---------ARR14(2)                 <---------ATERF1(1)                     --------->ANAC46   --------->At4g35610 <----                 <---------RAP2.3(1)                     --------->DEAR3(1) <---------At4g35610------                 ------>NtERF2                         <---------ATERF1(1) ----------->RAV1(1)<------                --------->DEAR3(1)          <-----------GT1--------->ORA47(2)   <---------GLK1(2)                <---------DEAR3(1)>>>>>>>>>SPL7        ------>ZmHOX2a(1) --------->At4g35610------>NtERF2              <---------ATERF1(1) >>>>>>>>>SPL4       <---------ALFIN1   --------->ZAT2     ---------              <-----------HVH21   --------->SPL7   <---------ALFIN1     ----------->RAV1(1)<---------RAP2.6(2)           ------>NtERF2        --------->LBD16 <---------ALFIN1 <---------At4g35610       <---------LBD16 ---->AtMYB61--------->ANAC46 --------------->AtSPL3------>ZmHOX2a(1)   --------->ANAC46  <---------LBD16   aaaacccttctgcctccgtcgcctccgcttcatccgtacaacaatctcaccctcctcctccgccgtcttctcaccagcagcagaatttgcattccggcgt  11808100                                                                                 ------>ZmHOX2a(1)                                                                                --------->TOE2(3)                                                                                --------->TOE1(3)      ------>ZmHOX2a(1)                                                      <---------ARR14(2)     --------->TOE1(2)                                                       --------->ARR14(2) ->RAP2.3(1)                                                                 <---------ARR11(3) --NtERF2                                                                    --------->ARR11(3) >NtERF2                                    --------->ANAC58        --------->YAB1 ---ANAC46                 <-----------GT1  --------->ANAC58       <---------ATHB12 >LBD16         ---------->DOF2           ------>ZmHOX2a(1)      --------->WOX13(1)                <-   caatgttcctccgatggcgaaagggcatttcacacttagccatccttcgcaattctctgtttcttctcaatcacaacaatatccttcacatttcgctctt  11808200  Previous    Next  AGI:  At4g22360.1    Description:  SWIB complex BAF60b domain-containing protein. similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19080.1); similar to unknown [Populus trichocarpa] (GB:ABK94708.1); contains InterPro domain DEK C terminal (InterPro:IPR014876); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) Range:  from: 11807672    to: 11810129    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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