Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                           ----------                                                                                           <---------MYB46(3)     --------->AtMYB61                                                                  <---------ZAT2 -------HVH21                       <---------YAB1                                      --------->At4g35610 -------TGA1                 <----------DOF2         --------->ANAC58                   <---------At4g35610 --->ID1       <---------At4g35610<-----------GT1    --------->ANAC58                  <-----------RAV1(1) ---------->WRI1       <----------DOF2            <----------DOF2                --------->AHL20(2)<-   tcatcgacctctacttgagcttctcctttcactttgttaccatttccctctcctttcgcaactacattacaacgagtttgcgatttattctgctggttat  11806800                                                                --------->GLK1(2)                                                             <---------ANAC58                                                             <---------ANAC58                                                             <---------ANAC46                                                            <------NtERF2                                                          --------->ALFIN1                                                          <---------DEAR3(1)                                                         --------->ATERF1(1)   <---------ICU4     --------->ANAC58              --------->ALFIN1  <---------YAB1      --------->ANAC46           <---------AtMYB61 -------->YAB1        --------->ANAC58           --------->ALFIN1 ----->YAB1 <---------ICU4          ----------->GT1 <---------ANAC46 -----YAB1 --------->ICU4           <---------MYB46(3) <---------AtMYB61 ---->ICU4--------->ANAC58       <------ZmHOX2a(1)<---------MYB46(3)   <---------HSFB2a(1)    <------ ->GT1    --------->ANAC58 ---------->DOF2       <-----------RAV1(1)   --------->HSFB2a(1)  <-------- --------YAB1       --------->MYB52(1)           <---------ZAT6 <-----------ARR10         ------>ZmHOX2a(1)   tatcatcatcgtaagcattagcaaacggcaaaagaggattgttgaaacctagtggtggaggtggcgaatcagaccgttccatcactctcttcctcttcac  11806900                                                                                       --------->TOE1(2)                                                                             <---------ANAC58                                                                             <---------ANAC58                                          <----------DOF2                <---------ANAC58                                         <---------DAG2              ---------->DOF2   --------->TOE2(3) -----GT1 ------>ZmHOX2a(1)           <-----------GT1             --------->At4g35610  --------->TOE1(3) ---HVH21--------->TOE2(3)         <----------DOF2        <-----------GT1<---------ANAC58   ctctctctcttcctcagaaacaccattcttcacttctctttcacctttcattctcaaaattttccctaagctaaagcttgcttcaaaaaccttagaacac  11807000                                   --------->ANAC58                                            <-----                             ------->GAMYB                                                     ------                            --------->MYB46(3)                                                 <-----                        ------>ZmHOX2a(1)                                                      <-----                       --------->TOE1(3)                                                       ------                       --------->TOE2(3)                                                      <------                    --------->GLK1(2)                    --------->ANAC58          --------->ETT(2)                    --------->ARR14(2)                   --------->ANAC58          <---------ETT(2)                    <---------ARR14(2)            <---------HSFB2a(2)          <---------HSFB2a(1)                  --------->HSFB2a(1)      ------->TEIL  --------->ANAC46      --------->HSFC1(2)                  --------->HSFC1(2)    <---------ATHB12 <----------ID1        <---------HSFC1(2)              --------->ANAC46---------->DOF2     --------->HSFB2a(2)       --------->At4g35610------    <XXXXXXXXXXXXXXXXXXXXMIR780.2  --------->ANAC58  ---------->DOF2      --------->YAB1      <------   aaaatcccagcgattcacgaagaatcctcaaccaaagaagcaatgaactcttccaaaaaacgccaaatacttcaaatcagaagcgtcgacagtcgcgaat  11807100                                                          --------->DEAR3(1)                                                        ------->GAMYB                                                    <---------ALFIN1 --------->HSFB2a(2)                           --------->ANAC58 <---------HSFB2a(2)                           --------->ANAC46 ----ARR14(2)                                  --------->ANAC58 --->ARR14(2)                               <---------ARR14(2) ------ARR10                                --------->ARR14(2) ----ARR11(1)                               --------->GLK1(2)                                  ------ ->TEIL   <---------CCA1(2)    --------->HSFB2a(2)<---------ALFIN1      --------->MYB46(3)     ------ ---ARR14(1)                   <---------HSFB2a(2)----------->RAV1(1) --------->ANAC46       -------- --->GLK1(2)                 --------->HSFB2a(2)--------->LBD16--------->DOF5.7(2)        *TSS------- ---CCA1(2)                  <---------HSFB2a(2)------>NtERF2----------->GT1     ---------->DOF2-----   ctactcgaacttatctctcgttcccaattttctcgagaaacttcaaaatccgccacaacgcagacgttaaacaaacaacctattaaagcttcaagagccg  11807200                                                        ----------->RAV1(1)                                                 <------------CBF                          <---------AHL20(2)                               ---------->DOF2  --------->ATHB12                           --------->AHL20(2)                           <-------GAMYB       <---------YAB1                          -------------- --->DEAR3(1)             ----------->GT1    <---------AHL20(2)             ------------>CBF --->RAP2.3(3)       <-----------GT1        --------->AHL20(2) <---------YAB1  --------->GLK1(2)<---- ->At4g35610       <---------WOX13(1)       --------->ICU4<---------ALFIN1 --------->YAB1<-----------TBP -->DEAR3(2)     --------->ATHB12     <------NtERF2     <---------ALFIN1  <---------ATHB12 --------->YAB1 ->NtERF2      <---------WOX13(1) <----------ID1--------->ATHB51      ------------>CBF---------------   actcaagtctcacccagattgattaactcggttaaaaggccgaatatttattattgggccacactgttatagcccaataacaatctgttccatttatatt  11807300                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                             --------->ANAC55(2)              --------->HSFC1(1)                                          <---------MYB52(1)                  <---------HSFB2a(2)       <---------At4g35610            <------ZmHOX2a(2)                   <---------GLK1(2)       --------->At4g35610           <---------ARR14(2)       --------->YAB1  <---------HSFC1(1)   <-----------HVH21                 --------->ARR14(2)<-----------GT1  --------->ANAC58         <--- ->AGL15                         <-----------GT1     <---------KAN4(2)  --------->ANAC58         <--- -------GT1               ------>ZmHOX2a(2)  <---------ANAC55(2)    --------->ANAC46             >>>> -->AGL3             <---------WOX13(1)------>ZmHOX2a(2)     <---------ICU4   --------->HSFB2a(2)----   acttctgtcagcagtattcagtaattgatctgtattcacgatccgatacttatcgaataaccattaataccctcaagcttctcgaagcaaactataaacg  11807400                  --------->ARR14(2)        <---------REM1(2)    --------->ARR11(3)                                               <---------ANAC46    --------->GLK1(2)                                               <------NtERF2    <---------ARR14(2)                                          --------->ZAT2    --------->ARR14(2)                                          <---------At4g35610    <---------ARR11(3)                                          <---------ZAT2    --------->DAG2 ------ANAC55(2)  <---------ARR14(2)                            ----------->RAV1(2)--------->ANAC58 ------ANAC46  --------->ANAC55(2)       --------->CCA1(2)      --------->At4g35610--------->ANAC58 >>>>CAMTA3    <---------ANAC55(2)  <---------ZAT14           <-----------RAV1(2)---------->DOF2 ------->GT1 <------ZmHOX2a(1)      ---------->DOF2      ---------->DOF2   ----------->GT1  <--------   cgtgaaaatctacaaggacgtattcgacattccacgagtaaagagatgagttctgaagttaaagccagctggcgaagaagtaaaaaagcaaatagattag  11807500                                                            <---------DDF1                                                            ----------->RAV1(1)                                                           --------->At1g77200                 ------                                                           --------->DEAR4(1)              -------->P                          --------->ANAC58                 --------->DEAR3(1)              ------>MYB46(1)                          --------->ANAC58              <---------ALFIN1--------->ATHB12   ------>MYB83            ------->GAMYB --------->ANAC46            ----------->RAV1(1)                --------->AtMYB61     --------->ANAC46   ---------->DOF2         <---------ICU4          <---------ICU4   ------->GAMYB     --------->ANAC58  -------->P            --------->YAB1--------->DREB2C(2)          --------->MYB46(3)     --------->ANAC58  ------>MYB46(1)      <---------------AGL15      --------->ICU4   <---------MYB52(2)     <----------ID1    ------>MYB83         --------------->AGL15      <---------YAB1   <---------MYB55(2) -GLK1(2)  <---------ALFIN1                <-----------------AGL1    --------->YAB1   <-----------GT1   ccaaaatacgacaacaccctctacctacaagccatagataccatgactcataagggcaacaccgacatttgtcatcatttgataaatctaaccaaccctg  11807600     --------->ARR14(2)     --------->KAN4(2)     <---------ARR14(2)    --------->KAN4(1)    <----------TaMYB80                                        --------->CCA1(2)                 <----   ---------->TaMYB80                                        <----------ID1                     -----   <---------KAN4(2) ----------->GT1                     ---------->DOF2*TSS                --------- ----->HVH21<----------DOF2---------->DOF2      <------ZmHOX2a(1) --------->ICU4<------ZmHOX2a(1)----   aagggcatattcgtctttccaaatagttataaagagacagagacgaagaaggagagagagaaagagacaagattagagaagaggataagagagagaaaga  11807700  Previous    Next  AGI:  At4g22350.1    Description:  ubiquitin carboxyl-terminal hydrolase family protein. similar to ubiquitin thiolesterase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G22285.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ82127.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21133.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83206.1); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 11803846    to: 11807190    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g22360.1    Description:  SWIB complex BAF60b domain-containing protein. similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19080.1); similar to unknown [Populus trichocarpa] (GB:ABK94708.1); contains InterPro domain DEK C terminal (InterPro:IPR014876); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) Range:  from: 11807672    to: 11810129    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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