Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->ANAC58                                           --------->ANAC58                              --------->AHL20(1)                              --------->AHL20(2)                                              <------                              <---------AHL20(2)                                      <------ZmHOX2a(1)                              <---------YAB1       ------->TEIL                      ----------->GT1                       --------->YAB1    ---------->DOF2                            ----------->GT1            <------ZmHOX2a(1)--------->AHL20(2) <---------ATHB12               <---------AHL20(2)   - -------DOF5.7(2)    --------->ANAC46------->TEIL--------->YAB1                --------->AHL20(2)   <   aaacgctctcagtaggatttttcactcaaaattttattgaatctaaagcaatgaacataagtgattcacagagaaatacaattaaacaggaaaaatggga  11803100                                                                 <---------ARR14(2)                                                   <---------HSFB2a(2)                                         <---------RAP2.6(3)     <---------ARR11(3)                                        --------->RAP2.6(2)      --------->ARR14(2)                                      --------->At4g35610        --------->ARR11(3)     ----------->GT1                  <---------At4g35610       --------->GLK1(1) ----ID1     <---------LBD16       <---------At4g35610          <---------GLK1(1)     --------->YAB1 -------->ARR14(2)                 --------->At4g35610      <---------HSFB2a(2)<---------bZIP60(1) ---------ARR14(2)              ---------->DOF2    --------->HSFB2a(2)    --------->MYB52(1)        <   caaatacgagtaaaatcgggaataaaacccaaatttaagcagccgaaatacttatggaaatactggaaatcttcactaatggtgtcagtaatcacacgag  11803200                                                 <------ZmHOX2a(1)                                               <---------TOE2(3)                                            ------>ZmHOX2a(2)                                            ===================HOX2a_HOX2a                                           <------ZmHOX2a(2)                                           =============HOX2a_HOX2a                                           ====================HOX2a_HOX2a                                           --------->CCA1(2)                                          <---------ARR14(3)                                          --------->AGP1                                          <---------ARR11(3)                                          <---------AGP1<------ZmHOX2a(1)                                          --------->ARR11(3)                                          --------->ARR14(2)                    --------->MYB46(3)   <---------GLK1(1)                  <---------ARR14(2)     --------->GLK1(1)                 =================================HOX2a_HOX2a         <-----------ARR10                 ==================================HOX2a_HOX2a       <---------CCA1(2)            <--           ---------->DOF2              ----------->ARR10   --------->ANAC58                 <-------  <------ZmHOX2a(1) ----------------->AGL3<---------ARR14(2)--------->ANAC58            <-------TEIL ---------TOE2(3)<------ZmHOX2a(1) <---------ANAC46   <---------TOE2(3) >>>>>>>>>RAP2.2 ------->TEIL   ctaaggagaataacaaagaggaaccaatactagtttctcgtggagatctgaggattgaggagacgaaacacatatctaaacaaaactatgtacatatgat  11803300                          ----------->HVH21                        <---------ANAC58                        --------->TGA1a                        --------->O2                        <---------O2        --------->At4g35610                        <---------ANAC55(2) <---------ZAT2                        <---------ANAC58    <---------At4g35610                        ----------->GT1<---------ANAC58                 <------ZmHOX2a(1)     <---------ANAC58      <---------TOE2(3) <---------ANAC46    --------->ZAT2 <------ZmHOX2a(1)      <---------TGA1a<---------ANAC46 -------LBD16  <---------TOE2(3)    <----------DOF2                                      <------ZmHOX2a(1) --YAB1----------->GT1  =======================bZIP_DOF                       --------->YAB1   tcaggaatgaggtaaataaggaagagacgtgaaacctgctttcgtgagctcagtttctactgtgccagagcgagagagaatgagaagacgaggaagaaga  11803400                                                                                                   --                                                                         <----------DOF2       ------                                                               --------->ARR14(2)              <-----                                                               <---------ARR11(1)        --------->RAP2.6(2)                                                               --------->GLK1(2)         ----------->RAV1(1)                                                               <---------ARR14(2)     --------->ANAC58                                                               ------->TEIL <---------YAB1-----------                                                           <---------HSFB2a(2)        --------->ANAC46                                                    ------>ZmHOX2a(1) <-----------GT1 --------->ANAC58                                             <---------GLK1(2)<---------ARR14(1)  --------->HSFC1(1)        --------->GLK1(1)                   -------->HAHB4 --------->HSFB2a(2)    --------->HSFB2a(2) <---------At4g35610                       <---------YAB1  --------->HSFC1(1)     <---------HSFC1(1)- --------->At4g35610                       --------->ICU4*TSS <---------CCA1(2)   <---------HSFB2a(2)   tggagcagagaaatcgagttgaagaaaactaagtagaagacgaaaatgattctccttatttctcgaatcttttaacttttgattctagaagccacaatta  11803500                     ---------->DOF2                    --------->AHL20(2)                <---------YAB1            <---------AHL20(2)            <---------AHL20(1)            --------->AHL20(2)            --------->AHL20(1)          <---------AHL20(2)          <---------AHL20(1)   --------->ARR11(3)         --------->YAB1        <---------ARR11(3)       --------->AHL20(2)  ---------->DOF2   ----------->GT1  <---------AHL20(2)                                                  <----------DOF2 -------->DOF2  <---------AHL20(2)            <---------AHL20(2)       <---------HSFB2a(2) --->AHL20(2)   --------->AHL20(2)            <-----------GT1 --------->YAB1        ------->TEIL----- ----AHL20(2)  <---------AHL20(2)     ------>ZmHOX2a(1)       --------->AHL20(2)--------------->AtSPL8 ->CBF--------->CCA1(2)<---------TOE2(3)   --------->YAB1------------>CBF     <---------YAB1 -------- -------->DAG2 --------->AHL20(2)  ------>ZmHOX2a(1)    --------->YAB1 --------->HSFB2a(2)   <-------   ataaagggatataatattttaattaaaggtaaaggtcctcctctatattaacttgaaatgacaattaaaaattcgagaatattatgaactcttttctaca  11803600                                                        --------->YAB1                                             <---------GLK1(2)                                           --------->LBD16                                          <---------HSFB2a(2)                                          <---------------AGL15                                          --------->HSFB2a(2)                                          --------->HSFC1(1)                                          --------------->AGL15                                         ======================================================MADS_MADS                                         ----------------->AGL1                                         ----------------->AGL2                --------------->AGL15                                         <-----------------AG                  <---------------AGL15                                         <-----------------AGL1                <----------DOF2 ----->DOF2<-----------GT1               <-----------------AGL2               <-----------------AGL2 ->HSFB2a(2)                        <---------ARR11(3)<---------TOE2(3)--------->GLK1(2) --HSFB2a(2)                    --------->YAB1   ----------->GT1  ---------->DOF2   aagttgcaaattgttaccttgttatgttcaatgctcataatcttccagaattggttaatgaaaacaaaaaaagaatcaattctttttttggacgatggaa  11803700                                                              --------->AHL20(1)                                                              <---------AHL20(2)                                                              <---------AHL20(1)           <---------TOE2(3)                    <---------ZAT6            <----------DOF2 --------->AHL20(2)       --------->YAB1              --------->DAG2       --------->GLK1(2)         <---------AHL20(2)     <---------------AGL15             ---------->DOF2      <---------GLK1(2) <---------ICU4            <---------ALFIN1     <---------GLK1(2)  ----------->GT1     ------>ZmHOX2a(1)--------->AHL20(2)     --------------->AGL15   tagaatagaatcgccaaaagtagagatagtgaattagattctattcctctttcattgttacaaataaattcgaaaaacagccacttctatattaagggaa  11803800            <-----------GT1    <-------MYC3                                                   <---------ANAC58      --------->ARR11(3)    ------->MYC3                                                   <---------ANAC58      <---------ARR11(3) --------->TGA1a                                     <----------DOF2  <----------DOF2---------->DOF2 <---------TGA1a                      --------->GLK1(2)  <----------DOF2        <-----------GT1   ctcacatgtgttttttactacaaaatttcaaaagtttgagaatttgaagaggtcgctttctttcaatatgcgtttttagtttttaccaaaagctcttccc  11803900                                                                                        ---------->DOF2                                                                                      --------->HSFB2a(2)                                                                                      <---------HSFB2a(2)                                                                   <---------------AtSPL8                                       --------->YAB1          ---------->DOF2       ----------------                                 --------->ZAT6             ------>ZmHOX2a(1)<---------ARR11(3)                               <-----------GT1 ------->GAMYB<----------DOF2  --------->GLK1(2)                   <-----------GT1    <---------YAB1       --------->TOE2(3) --------->ARR11(3)------   aaaactcatatatgtgtttttttaccaaaggtttttcactatgatacaacaggctctctatcctttaaaggggtccaaaaatctttttccaaaagagttg  11804000  Previous    Next  AGI:  At4g22340.1    Description:  phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative. similar to ATCDS1 (CDP-diacylglycerol synthase 1), phosphatidate cytidylyltransferase [Arabidopsis thaliana] (TAIR:AT1G62430.1); similar to Phosphatidate cytidylyltransferase [Medicago truncatula] (GB:ABD33020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38896.1); contains InterPro domain Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) Range:  from: 11799971    to: 11803457    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g22350.1    Description:  ubiquitin carboxyl-terminal hydrolase family protein. similar to ubiquitin thiolesterase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G22285.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ82127.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21133.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83206.1); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 11803846    to: 11807190    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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