Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     ==================                                                                                  ===================                                                                                  <------ZmHOX2a(2)                                                                                 <---------ARR11(3)                                                                                 --------->ARR11(3)                                                                                 <---------ARR14(3)                                                                                 --------->GLK1(2)                                                                                 --------->ARR14(3)                                                                                 <-----------ARR10                                                                            --------->REM1(2)                                                                           --------->ALFIN1                                                                          --------->LBD16                                                                         <---------ANAC46      <-----                                                                         --------->DEAR3(1)   <------                                                           ------->TEIL------>NtERF2 --------->At4g35610                                                           <---------ARR14(2)    <---------ARR14(2)                                                    --------->LBD16    --------->LBD16      <------NtERF2                                                   --------->ANAC46   --------->DEAR3(1)   ------>NtERF2                                                  <---------LBD16     --------->ANAC46    <---------ALFIN1                                                 --------->MYB52(1)  <---------LBD16 ----------->RAV1(2) --------->DOF2                                  -------->P--------->ARR14(2)    --------->ARR14(2) ----->TOE2(3)   ----------->RAV1(1)            --------->MYB52(1)<---------GLK1(1)------>ZmHOX2a(2) ----->TOE1(3)  <----------ID1                <---------MYB52(2) ------->TEIL   <------ZmHOX2a(1)   -   cttatagctcaatccaatgcaacaagaacattgaaccaaaaaccaaaaactaaccggaacgtatttgaatctccgccgtggaggatcttctgccaccgtt  11794300     --------->ARR14(2)     <---------ARR11(1)     <-----------ARR10                                 <---------------AGL15     <---------ARR14(2)                               <---------YAB1       <---------ALFIN1    <---------CCA1(2)                              --------->DOF5.7(2)    <---------ZAT18    <---------ARR14(1)                     --------->ATHB12               --------->ZAT18 <------NtERF2                             <---------ICU4               --------->ZAT18 ===============HOX2a_HOX2a               <---------YAB1                ------>NtERF2 ===============HOX2a_HOX2a        <---------At5g28300----------------->AGL1                      <-- ----MYB52(1)                     <-----------GT1  <---------MYB52(1)   <---------ZAT18  <---------MYB52(2) -GAMYB  ------>ZmHOX2a(1)     <----------DOF2    <-------GAMYB     <-----------RAV1(1)  --------->MYB46(3) ----->NtERF2                  <---------DAG2     <---------RAP2.6(3)   --------->PCF2 ----------->RAV1(1)   gccaccgtatcctcgctcggagaattactctcacttttaccatcttcattgccgttaccattctgagacaatggtgcccacttatacagcaacaaatgcg  11794400                                                           <---------LBD16                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                     --------->At4g35610                                                     <---------LBD16                                                     <------NtERF2                                                    <---------RAP2.3(1)                                                   <---------RAP2.3(2)                                                   <---------DEAR3(1)                                               <---------ZAT2                                               <---------At4g35610                                               --------->ZAT2                                              ----------->RAV1(1)                                            --------->At4g35610                                XXXXXXXXXXXXXXXXXXXXXXX>MIR404                               <---------DOF5.7(2) --------->DEAR3(1)     <---------YAB1                        <---------ALFIN1 --------->At4g35610     <------ZmHOX2a(1)<----------DOF2                       <---------MYB55(2)<---------ZAT2 --------->ATERF1(1)--------->ATHB51                       --------->MYB46(3)--------->ZAT2 <------NtERF2   <--------HAHB4          <-----------HVH21  <---------MYB52(1)--------->At4g35610      --------->YAB1          <-----------TGA1   --------->DOF5.7(2)  <---------At4g35610  <---------YAB1           <----   <---------ICU4      --------->DEAR3(2)<---------At4g35610 --------->LBD16      =================== ----ZmHOX2a(2) --------->ARR14(2) <---------LBD16--------->At4g35610  --------->ICU4       <------ZmHOX2a(1)   atccattactaccgtcagaattcgaaccaccgttaacgacggaagctgcagcagcggcggaaccggaggagctattattattgtctttcttagaggaagg  11794500                                                                                        <---------ZAT14                                                                                  --------->MYB52(1)                                                                                  ------>MYB83------>MYB83                                                                   <-----------HVH21    <---------ZAT18                                                                   --------->REM1(2)    --------->ZAT14                                                                  --------->ALFIN1------>MYB46(1)                                                                <---------ANAC46 ----------->HVH21           ------>MYB83                                         <---------ANAC58 --------->MYB55(1)           ------>MYB46(1)                                      <---------ANAC55(1) <------------AtMYB77          <---------ALFIN1                                      <---------ANAC58<---------MYB52(2)         --------->MYB46(3)                                   --------->SPL7    <---------MYB46(2)       ------->TEIL                                         <---------SPL7      <---------MYB111(2)    --------->ALFIN1                                        <---------SPL1(2)   <---------MYB111(1)   --------------->AtSPL8                                  <---------ANAC58   -------->P--------->ZAT18  --------->O2                                             <---------ANAC58   ------>MYB46(1) -------  <---------ANAC55(2)                                   ------------------>SPL14<---------MYB59  <---------ANAC58                                      <---------ARR14(2)    ------>MYB83  ---------  <---------ANAC55(1)                  --------->At4g35610--------------->AtSPL3--------->AtMYB61  <---------ANAC46                     ----------->GT1  --------->ARR14(2)  <---------MYB111(2)  <---------O2                       --------->SPL7     <---------MYB52(1)  <---------MYB59 ---------  --------->TGA1a                  <-----------HVH21   <---------DEAR3(2)   <---------MYB46(2)------>MYB46(1)  <---------TGA1a            ------>ZmHOX2a(1)       <---------ANAC58       <---------MYB111(1)  <---------ANAC58           ----------->HVH21       <---------ANAC58     <-----------ARR10 <-------- --ZmHOX2a(1)    <<<<<<<<<TBF1<---------ALFIN1    <---------MYB52(1) <---------ANAC46------->GAMYB -- ===========bZIP_DOF  <---------ALFIN1 --------->LBD16<---------ATERF1(2)<------ZmHOX2a(1)  <--------   agagacgtgtacccacttcttcttccacttcctcaccggtccggtgaaaaccgttgccggtccgtaccgtgtcgaggacctacctaaccgtgcaccaact  11794600       <----------ID1  <---------HSFB2a(2)  --------->HSFB2a(2)  --------->TOE2(3)                                            --------->GLK1(2) ->P --------->MYB52(1)                                        ------>MYB83 ------->TEIL >MYB46(3)              <---------MYB52(1)                     ------>MYB46(1) >AtMYB61            <---------YAB1                           --------->WOX13(1) -MYB111(1)    ----------->GT1       --------->YAB1          --------->AtMYB61 <----------DOF2      - ---->ZmHOX2a(1)     <---------TOE2(3)            <---------AHL20(2)    <---------TOE2(3)         --- -ALFIN1     ------->TEIL     <-----------GT1    --------->AHL20(2)   <---------AHL20(2)      -------   ccttccataacgacgaatcgtttatcgttgattcactgatcaaaattcaaatttaaaatcccaccaatctgtttaatgaaactttgttttcaaatttctt  11794700                                      <------ZmHOX2a(2)                                      *TSS                                      <---------GLK1(1)                                      --------->GLK1(1)                                     <---------ARR11(3)                                     <---------AGP1               <------------CBF                                     --------->AGP1              --------->ATHB12                                     --------->ARR11(3)         <---------AHL20(2)                                     <-----------ARR10          --------->AHL20(1)                                     --------->ARR14(2)         --------->AHL20(2)                                     <---------ARR14(2)         <---------YAB1                              --------->ARR11(3)               --------->AHL20(2) ---------->GT1      --------->DEAR3(1)------>ZmHOX2a(2)  ------------>CBF    --------------->AGL15 ------->DOF2       --------->ANAC46<---------CCA1(2) --------->DEAR3(2)      <----------DOF2 -->TOE2(3)   <----------DOF2 <---------ARR11(3) <---------------------WRI1   <---------------AGL15   aaaagtaaaatttgctctttccaccgaaggaagaactcagatctcagtttttgcgaagcgaccaattttattggtttttgcttcaagtagaagactcttg  11794800                          --------->ALFIN1                         <-------MYC3                         ------->MYC3                                   <----------DOF2                         <-------MYC2                             --------->ATHB51                         ------->MYC2                             --------->YAB1                         ------->MYC4                             --------->ATHB12                         <-------MYC4                             <--------ATHB1                        --------->ANAC55(2)                       -------->ATHB1                        <---------ANAC55(2)                       <---------ICU4                        <---------ANAC46                         <---------YAB1                        <--------ABF1                            --------->ICU4                        <---------TGA1a                          <---------ATHB51                        --------->O2                             <---------ATHB12                        <---------O2                           --------->YAB1                        --------->TGA1a                       --------->ZAT6                   ----------->HVH21                     --------->ANAC55(2)                 <------------CBF                        --------->ANAC46          ---------->DOF2               >>>>>>>>>>>>WRKY18                      <-----------GT1 <---------ANAC58               <---------YAB1                          <---------YAB1  <---------ANAC58       -------        <---------HSFB2a(1)   ----------->HVH21      --------->YAB1 <---------WOX13(1)   ---------->DOF2   ttgagcaagaaggtttgactattgacacgtgtgtgatagttataggctaatctaattatacttaacaataattgcttttgtttgagaaagagaaagactc  11794900                                                                     --------->GLK1(2)<---------ARR11(3)                                              --------->YAB1    ---------->DOF2       --------->ARR11(3)                                         <-----------TGA1 <---------ANAC46     ----------->RAV1(2)                                        <---------ANAC58<---------ZAT14        <---------LBD16                       <---------ATHB12 <---------ANAC58--------->ZAT14    --------->GLK1(1)      <-- -->GLK1(2) <-----------ARR10   -------->ZAP1<---------YAB1 <---------ZAT6 <---------GLK1(1)  ------>ZmHOX2a(1)   tgtctaaaccagagggtctcggctaatcgttttgacctagtagcgtcatcatagagagtttagtggaaaagactctgatacccctgaagttctctcctat  11795000                             <---------CCA1(2)                                     --------->YAB1                        --------->REM1(1)        <---------TOE1(2)        <---------AHL20(2)                       <-------TEIL --------->YAB1      <---------TOE1(3)<---------AHL20(2)                    <---------At4g35610      ------>NtERF2               <---------AHL20(1)  <---------ICU4    --------->At4g35610<---------ICU4   <---------TOE2(3)--------->AHL20(2) -------AHL20(2)<-----------HVH21<----------DOF2 <---------TOE2(2) --------->TOE2(3)  <---------GLK1(2)   ataaacatcgcttcaacctttcagctacatcatctctttcattacgacgcctaggtttagggttttcaacatcaatttttttgaatcagattagtttttt  11795100                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->ALFIN1                                                       <---------MYB46(3)    <---------AHL20(2)                            <----------DOF2         --------->RAP2.6(3)   <---------AHL20(2)                            --------->TOE2(3)       --------->MYB52(1)   --------->AHL20(2)       xxxxxxxxxxxxxxx>smallRNA(le3)              ---------->DOF2         ------   tttttttaaattggggctacattgtaccgagagaagggctcgatttcgatacctttactcttgaatttgccaaaaaaacggctgtagctagattgaataa  11795200  Previous    Next  AGI:  At4g22320.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23253.1) Range:  from: 11792936    to: 11794738    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version