Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                  <--                                                           --------->At4g35610                   <---                            <---------At5g28300            <---------At4g35610                   ----                      <-------TEIL                         <---------ZAT2                        <---                      ------>ZmHOX2a(2)                    --------->ZAT2                        ----                     <------ZmHOX2a(2)                    <---------ARR14(2)                     <---                    <---------ARR14(2)                 <---------DEAR3(1)                       <----             --------->ANAC55(2)                     <-----------HVH21                         ------             --------->ANAC46                       <---------ANAC58                       --------->ATHB12             --------->ANAC58  <-------GAMYB   --------->At4g35610                      <---------ANAC46 -------->LBD16     --------->ARR14(2)        --------->ARR11(3)                    --------->At4g35610 ---------->GT1    <------ZmHOX2a(1)      ---------->DOF2<------NtERF2              <---------ZAT2<-- -------LBD16--------->ANAC58 <---------ANAC46<---------ARR11(3)                    --------->ZAT2--- -------GT1  <---------ANAC55(2)<---------MYB52(1)  <---------ANAC58                <---------At4g35610   accggaaaaaaacttacgcgaggatccatttgccgttgagaaggaaaagagcttccgtcggagctggagtagggttcttagactcgagctgtgtgattag  11766900          <---------At4g35610                                                                     ---          <---------ZAT2                             >>>>>>>>>SPL7                                ---          --------->ZAT2                             >>>>>>>>>SPL4                                ---          --------->At4g35610                        --------->SPL7                               === ---->ZmHOX2a(2)                                   --------->LBD16                                --- -------GLK1(1)                                   <---------ANAC58                                --- ------AGP1                                       <---------ANAC55(2)                             <-- ----->ARR11(3)                                   <---------ANAC46          ========================= ------ARR11(3)                                   <---------ANAC58          <----------DOF2       --- ----->ARR14(2)                                  --------------->AtSPL3  ------>ZmHOX2a(2)      <---- ------ARR14(2)                             ------>ZmHOX2a(2)     <-------PIF5     --------->At4g35610 -----CCA1(2)                             <---------ARR14(2)      ------->PIF5    --------->DEAR3(1) ----->ARR10                              --------->ARR14(2)------->TEIL<------ZmHOX2a(2)<---------CCA1(2) ----ZmHOX2a(2)                           <---------AGP1    --------->ARR14(2)    --------->RAP2.6(2) ------>GLK1(1)  --------->ARR14(2)   --------->TOE2(3)     <---------ARR14(2)  <---------At4g35610   atctccgatttcagctctggtttcgctcgatgcgcttaaacctcgatctgttccgtacaacgaatccacgagcgatctctttagccgctccgtctcttcc  11767000                              --------->At4g35610                      <------NtERF2                     ------>NtERF2                     --------->LBD16                    --------->RAP2.3(2)                    <---------ATERF1(2)                    --------->RAP2.3(3)                    --------->DREB2C(2)                    --------->ATERF1(2)                    --------->DEAR3(1)                    --------->RAP2.6(2)                    --------->ANAC46                    --------->RRTF1(3)                    --------->RRTF1(2)                   --------->RAP2.6(1)                   --------->ORA47(2)                   --------->ATERF1(1)            <---------ARR14(2)                   --------->RRTF1(1)             --------->ARR14(2)                   --------->ERF1                 <---------ARR11(1)                   --------->RAP2.3(1)            --------->GLK1(2)                  --------->ABI4(1)               ------->TEIL                  --------->At4g35610            <---------CCA1(2)                  ------>NtERF2                 --------->LBD16                  <---------ATERF1(1)   <---------CCA1(2) ------>ANAC58    <---------At4g35610 <---------CCA1(2) ------>ANAC46    --------->LBD16     ------>ZmHOX2a(1) ------>ANAC58   --------->DEAR3(1) ------>ZmHOX2a(2) =====================================bZIP_DOF --------->ANAC55(2) ------>bZIP60(2)--------->ANAC46 <---------ARR14(2)             <----------DOF2 ------>TGA1a  ============================HOX2a_HOX2a    <---------ANAC46                         <- -------O2<---------ANAC58    <---------At4g35610<---------ARR14(1)                               === =======bZIP_DOF <---------ALFIN1 --------->ARR14(2) <-----------RAV1(1)                          --- ------>O2<---------ANAC58 ---------->DOF2     <---------ANAC55(2)                            <------ -----ALFIN1   ------>ZmHOX2a(1)  ----------------------->TaNAC69(2)         <---------LBD16  -------   acgtcttcaattgcttcctccgccgccaatagagctgatcctatctctcccgtatctgtggctcggactttgaaaactctacggggggaaacagcgattc  11767100                         --------->ATHB51                         <--------ATHB1                         --------->ATHB12                         <---------ICU4       --------->ARR14(2)                        <---------AHL20(2)    <---------ARR14(2)         <------ZmHOX2a(2)                  --------->ANAC46        <---------ARR11(3)        <---------WRKY12        --------->ARR11(3)     --------->bZIP60(1)       <---------GLK1(1)<---------ATHB51   <---------HSFB2a(2)   --------->ALFIN1<------NtERF2<-----------HVH21      <---------ANAC46      <------MYB46(1) --------->LBD16   --------->At5g28300     --------->HSFB2a(2)               <---------ANAC46 --------LBD16    ----------->GT1 <---------WRKY38(1)  <---------ANAC58      <------MYB83 ===============HOX2a_HOX2a   <---------TOE2(3)--------->MYB52(1)           <---------DEAR3(1) --->ZmHOX2a(1)   <---------MYB46(3)      ----------------->AGL1            --------->MYB46(2) ---ARR14(2)     <---------DEAR3(1)    <---------MYB52(1)                  <---------ZAT14 -->ARR14(2)    <---------ABI4(1)----------->HVH21     <---------ANAC58 <---------ZAT6   ctccggtggagatcatcgggcggtgaataattgaggtcaccggtaccagaaacggaggcttggagatagatttagagttcggtgagattgaaactctggt  11767200               --------->ZAT18            <---------ANAC46            <---------ANAC58         <---------AHL20(2)            <---------ANAC58    <------NtERF2           <---------MYB46(3)  ------>NtERF2                                                      <--   <---------ZAT2             --------->DEAR3(1)                                                 ----   --------->At4g35610        <---------ETT(2)                                               --------   <------NtERF2          --------->DEAR3(2)                             --------->ZAT18 --------->ZAT14   <---------At4g35610   <---------At5g28300                             <---------ZAT18 <---------ZAT14   ttggcagctaaattgggtggacaattgtaccgtcgccatttttttttgtttcttcgactaaaatttcgaagctagtgaacaagaatagacctgtactgat  11767300                                        <---------MYB46(2)                                        <---------MYB111(2)                                        <---------MYB59                           <----------DOF2      --------->ANAC58              --------->TOE2(3)         <---------MYB111(1)             --------->ANAC55(2)      -------->P--------->ANAC58             <---------ANAC55(2)     ------->GAMYB             <---------ANAC46       <---------MYB111(1)             <---------ANAC55(1)    <---------MYB111(2)             --------->ANAC58       <---------MYB52(2)             <---------ANAC58       --------->MYB46(3)                                   ------->TEIL             <---------ANAC58       <---------MYB55(2)                                   <-------TEIL -------AHL20(2)          <---------ANAC58------>MYB46(1)                          <------ZmHOX2a(2) ----->AHL20(2) *TSS      <---------ANAC58------>MYB83   ----------->GT1          --------->ARR11(3)< ->ICU4      --------->ANAC58 --------->YAB1    --------->ANAC46                  <---------ARR11(3)-   tttatagacattgttacgtaaatgttttgctttcatcaactaccaaactcacaccaagagggataatatcgactattccacatagatcatgtacattcga  11767400            <-------MYC3            ------->MYC3            <-----------HVH21            <-------PIF5            ------->PIF5            <-------MYC2            ------->MYC2           --------->TGA1a   --------->MYB46(3)           <---------O2 <---------ARR11(3)           --------->O2 --------->ARR11(3)           --------->ANAC55(2)           --------->bZIP60(2)        --------->ARR14(2)           --------->ANAC58 --------->At4g35610      --------->ALFIN1           --------->ANAC58--------->MYB52(1)       <-----------HVH21           <---------ANAC55(2)------->GAMYB        --------->ALFIN1           <---------TGA1a<---------WRKY12      <---------DEAR3(1)                               <---           ===========================MYC_MYB----------->HVH21                               <-------         <---------ALFIN1<------ZmHOX2a(2) --------->ANAC46                                --------->MYB52(1) ---------YAB1    --------->CCA1(2)   <---------ARR14(2)  <---------ANAC58     --------->AHL20(2)---- -------->ANAC46 <----------ARF1      --------->GLK1(2)   <---------ANAC58 ----------->GT1 <---------   ctacgatactgccacgtgagagacaagatcaacggccaagaatccactcgacggtgtgaggcgagcattgtttaggctagataaaatccaaaataacggt  11767500                                                                                                   <-                                                                                                  ---                                                                                                <----     <---------ANAC58                                                                         -------     <---------ANAC58                                                                        -------- ------ZAT14               <---------O2                                                     <-------- -----MYB.PH3(1)           --------->O2                                                     <-------- ----->ZAT14               <---------ANAC46                                                 --------- --GT1                    <------NtERF2             <----------DOF2                   ---------->DOF2   ttactgggcttgaatagactaaatgggcctcgtgaacaaaaaacctcttgtattcttttttgcatttacatcatcttcttcaataaccaaaagaaacgta  11767600                                                                      <---------ARR11(3)                                                                   <---------HSFB2a(2)                                                                   --------->HSFB2a(2)                                                                --------->ARR14(2)                                                             --------->ALFIN1                                                            ------->MYC2                                                            <-------MYC3   <---------ZAT18                                          ------->MYC3   --------->ZAT14                                          <-------MYC2   --------->ZAT18                            --------->At4g35610 ------>ZmHOX2a(2)   <---------ZAT14                         <------ZmHOX2a(2)<-------PIF5               <------ZmHOX2a(2)   <-------TEIL                   ------->TEIL--------->ANAC46  <---------ARR14(2)    <---------MYB52(1) --------------AtSPL8             <---------ARR14(2)        ------->PIF5           --------->SPL7 ------->DOF2                     <-----------ARR10        <---------bZIP60(2)   <---------RAP2.6(3) ---TEIL                          --------->ARR14(2)       =========================bZIP_DOF -->TOE1(2)                       <---------ARR11(1)       <---------TGA1a       <-----------HVH21 --->GT1   --------->TOE2(3)     <---------CCA1(2)         <---------ANAC46      <---------SPL7 ---------------TaNAC69(2)       <---------ARR14(1)        --------->O2         --------->DEAR3(1) -------AtSPL8                 --------->ANAC55(2)         <---------O2  <----------DOF2------>ZmHOX2a(2) ------>AtSPL3----------->GT1  <---------ANAC55(2)         --------->TGA1a   <-----------GT1   caaagtacacaaaccgtagttaaaactttggaaacgtatctagggatcacctcacttactcacgtggatcgagaacttttagccgtccgatcgttttcag  11767700                         <---------DEAR3(2)                         <---------MYB46(3)                       --------->SPL7                      ------------>AtMYB77                     ----------->HVH21                     <---------SPL7                    ========================HOX2a_HOX2a                 --------->ATHB12                   <-------TEIL                 --------->YAB1                 --------->ANAC46                <---------ATHB12            <------ZmHOX2a(2)            --------->ZAT18         <---------ARR11(3)                --------->ARR14(2)            <---------ZAT18         --------->ARR14(2)                <---------ARR14(2)            <---------ZAT14         <-----------ARR10<-------GAMYB  --------->ANAC58                --------->ZAT14         <---------ARR14(2)          <------ZmHOX2a(1)   ----------->RAV1(1)         --------->DAG2         --------->ARR11(3)    ---------->DOF2 <---------LBD16         --------->ZAT18         --------->GLK1(2)--------->At5g28300 <---------ALFIN1         <---------ZAT18           <---        <---------CCA1(2)----------->GT1 --------->ANAC58--------->RAP2.6(2)        ---------->DOF2 --------->RVE1(1)  ------>ZmHOX2a(2)==============HOX2a_HOX2a         --------->ZAT14           ----   aaaatatcgagtatctcaatgatcggacggttacaaagaggacacgatccacggttcagccacaattctctagagcacactctgcaaaaagtatgaccac  11767800  Previous    Next  AGI:  At4g22240.1    Description:  plastid-lipid associated protein PAP, putative. Identical to Probable plastid-lipid-associated protein 2, chloroplast precursor (PAP2) [Arabidopsis Thaliana] (GB:O49629;GB:Q8LFZ5;GB:Q8VXU7); similar to FIB (FIBRILLIN), structural molecule [Arabidopsis thaliana] (TAIR:AT4G04020.1); similar to Plastid lipid-associated protein 2, chloroplast precursor (GB:Q94KU6); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) Range:  from: 11765815    to: 11767316    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g22250.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03965.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABD32654.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 11767525    to: 11768464    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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