Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------YAB1                                               --------->AHL20(1)                                             <---------AHL20(2)                                             --------->AHL20(1)                        <---------YAB1    --------->AHL20(2)                       <-----------GT1    <---------AHL20(2)                   <---------ICU4     <---------RVE1(1)                 <---------TOE2(3)    <---------CCA1(1)           --------->ICU4 --------->TOE2(3)  --------->AHL20(2)           <---------YAB1 --------->TOE1(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->TOE2(3)------>ZmHOX2a(1) <---------AHL20(1)                  <---------AtLEC2 ---------DAG2  --------->AHL20(2)   <---------ARR11(3)               <---------SPL7             <--- ----------DOF2 <---------AHL20(2)   --------->ARR11(3)   ----------->GT1<---------ANAC46       ----- --------GT1    --------->YAB1       --------->AHL20(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ------ ----AHL20(2) <---------YAB1     ---------->DOF2<---------YAB1        ----------->HVH21      <-------   aactttataaaacattattaatatttatccttataaaaagatattaaaatattatgagacgagttatatagtgggacgggtttgcattgatataacgcgg  11752100                                                           <---------AHL20(2)                                                 <---------AHL20(2)                                                 --------->AHL20(2)                                               <---------AHL20(2)                                               <---------YAB1       <---------AHL20(2)                                               --------->AHL20(2)   --------->AHL20(2)     <----------DOF2     --------->ZAT6       --------->YAB1   <---------AHL20(2)                   <  --------->ARR11(3)    <---------YAB1        --------->TOE2(3)--------->AHL20(2)                   <  <---------ARR11(3)  --------->YAB1    <-----------GT1    --------->AHL20(2)                    ---- ----GAMYB   <---------YAB1      <---------AHL20(2)    <---------AHL20(2)                   --------- ------>GT1<---------AHL20(2)   <---------AHL20(2)     --------->AHL20(2)                --------->TOE1(3) --->LBD16--------->AHL20(2)    --------->AHL20(2)    --------->AHL20(2)--------->ZAT6   --------->TOE2(3) --LBD16  <---------AHL20(2)    <---------AHL20(1)<---------YAB1   --------->YAB1 --------->AHL20(2)<   gttaaatctttatttattattctatcatcactaattttttttttacaatattaatataaaattatataattttaatactaaaaatttaaaaccttaaaat  11752200                       <---------AHL20(1)                       <---------AHL20(2)               --------->AHL20(2)             ----------->TBP                   ----------->GT1        <---------AHL20(2)           --------->AHL20(2)                <xxxxxxxxxxxxxxxxsmallRNA(s)           ----------->TBP                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         ----------->TBP                    <---------LBD16          --------->AHL20(2)        <---------AHL20(2)                 xxxxxxxxxxxxxxxx>smallRNA(s) <------------CBF       --------->AHL20(2)         --------->LBD16                  --------->AHL20(2)      <---------YAB1   --------->AHL20(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------YAB1   <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <- ---------YAB1 <---------AHL20(2)<---------ANAC46             ------------>CBF                     -- ---------TOE1(3)   --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     ---- ----->AHL20(2)----------->TBP   <---------ANAC58        ------>ZmHOX2a(1)                 <--------- >AHL20(2) <---------AHL20(2)    <---------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s)              ---------- ---------TOE2(3)   --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ttaagattattatatatataaataaaatatttgctccgtggtataccacgggttaaatcctagttccaatataaaattgcatagtgatgttttctttaaa  11752300                                        <---------ANAC55(1)                                        --------->ANAC55(2)                                   ----------->GT1                                  --------->DAG2                            --------->AHL20(1)                            <---------AHL20(2)                            --------->AHL20(2)                       --------->AHL20(2)                       --------->AHL20(1)                                  --------->AHL20(2) --------AHL20(2)      <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <-- ------->AHL20(2)  --------->AHL20(2)   <---------ANAC55(2)               ----------->TBP         --- ----->YAB1       <---------AHL20(2)   <-------TEIL              --------->ZAT14                 <--- -DOF2            --------->AHL20(2)  <-----------GT1            <---------ZAT14                 ---- ----->AGL15 --------->TOE2(3)   ---------->DOF2                <-----------HVH21       ------>ZmHOX2a(1)   aataaatacaaataacataaataaataaaataaaataaagttacatgtttgagcctctcattttcccttcagtgctataaattcagactccttcgctaaa  11752400                                     --------->ARR11(3)                                     <---------ARR11(3)          ----------->GT1           <---------CCA1(1)         ----------->GT1            <---------RVE1(1)     ---------->DOF2                <---------GLK1(1)                              --------->At4g35610 -------AHL20(2)                    --------->GLK1(1)                              <---------At4g35610 ------>AHL20(2)           <------------CBF<---------ZAT6           --------->GLK1(1)          <----- ------AHL20(2)    ---------->DOF2 <---------ARR11(3)               <---------GLK1(1)        <------- ----->AHL20(2)---------->DOF2     --------->ARR11(3)   ---------->DOF2  ------------>CBF    --------   taaatcacaaagcggaaaaaagaaagaagaattgagagatatctagtgttttaaaaaaaaaagaactgagaaatcagcaatggggagcttaagagtgagc  11752500                                                       --------->ANAC58                                                       ----------->GT1                                                       <---------ANAC55(2)                                                       --------->ANAC55(2)               <-------TEIL      <-------GAMYB                                    <---------ANAC46      --------->CCA1(2)     <-----------RAV1(1)                          <---------------AtSPL3    <---------ARR11(3) ----At4g35610                                 ------>ZmHOX2a(1)----------->GT1      <---------ICU4 --ZAT18                             ------>ZmHOX2a(1) --------->ANAC58     --------->ARR11(3)   <--- ->ZAT18      <---------MYB46(3)  ------>ZmHOX2a(1)   <-------TEIL   ---------->DOF2--------->AHL20(2)   acatttgctgttgcagtagttgtatgtctctccatcctcctcatgtctcctacaggtacgtaaatttagttaaaagaagatttagaataaatacatgtta  11752600                                                                   <---------ANAC46                --------------->AGL15                   ----------->HVH21                <---------------AGL15                 --------->ALFIN1               ----------------->AGL3               --------->ALFIN1               <-----------------AGL3             <---------ANAC46--------->At4g35610               <-----------------AGL2             <---------ANAC58<---------At4g35610               <-----------------AGL1             <---------ANAC58<------NtERF2            <----------DOF2                    <------NtERF2   <---------ZAT14         ------->TEIL                        <---------ANAC46  --------->ZAT14   <-----------RAV1(1)                       <---------ANAC58--------->At4g35610                    - ------TOE2(3) ----------------->AGL2        <---------ANAC58<---------At4g35610  <-----------RAV1(1)   atgaaatgttgcatctttctatatatggactggacacaagtagatgggcgtagagtgtgtgacagcgcagcgggtttatgtagtatgttgttctcttgca  11752700                     --------->LBD16                     <------NtERF2                    --------->RAP2.6(2)                      ------>ZmHOX2a(1)                    --------->ANAC58            <---------GLK1(2)                    --------->RAP2.3(2)        <---------At4g35610                                 --                    --------->RRTF1(2)         --------->At4g35610                  ------>NtERF2  <-                    --------->ANAC58<------NtERF2            --------->LBD16     <---------At4g35610            --------->ATHB12<-----------GT1   ----------->ARR10             <---------MYB52(1)     -- -------->ANAC46   --------->RAP2.3(1)       <-----------RAV1(2)           <-------GAMYB--------->ICU4   atacacaatgcaattcattgggccgcaattttactggaggcgaatgctcagatgctcgttttcctggtttaagtgtctgttattgctgccataatgtaga  11752800                                                       <---------ANAC46                                                       <---------ANAC58                                             =================bZIP_DOF                                             <---------DEAR3(1)                                             <---------bZIP60(2)                              <---------At4g35610      <---------ANAC58                         <---------WOX13(1)  <---------O2                --------->ANAC58             --------->TGA1a    --------->ZAT14   <---------YAB1         --------->O2    <---------ZAT14  ------->MYC3            <---------TGA1a    --------->At4g35610--------->ATHB12      --------->bZIP60(1)                                <----   --------->ALFIN1  <-------MYC3            --------->bZIP60(2)                             <------- ------->ZAT14  --------->ANAC58             <---------bZIP60(1)   --------->ALFIN1  <---------ANAC58 --------ZAT14---------->DOF2 --------->At4g35610  <----------DOF2 <---------ANAC58  <---------ANAC58 ------->ZAT18=========================================bZIP_DOF    <---------ANAC58  <---------AtLEC2   gagcagtgctgaaatggaaagcatgtgattgcagatgctagaaaacgacgtcgctttgtgtgtgtgagtgtgtgtgttttgctatttgcatgtttatgct  11752900                                                                                                    <                       <---------ANAC46                                                        <-----                       <---------ANAC58                                                     ---------                       <---------ANAC58     <---------MYB52(1)      <-----------HVH21     <---------ANAC58                     <---------YAB1        <-------GAMYB         <-------GAMYB            <---------ANAC58               <---------TOE2(2)          <-----------RAV1(1)   <---------ANAC58          <---------ANAC46         <---------bZIP60(1)     <---------ANAC58               <---------ANAC46   --------->DAG2  <- ------DOF2    <---------TOE1(2) <---------ANAC46               <---------ANAC58  ---------->DOF2  <- --YAB1  --------->bZIP60(1)     <---------ANAC58      <---------MYB52(1)        <---------ATHB12 <--   ttcatttcatcacatcatatgttttgagtgttttgccttgtactctgttgtgcttctgtttgttttgcgttgtcaagtctccaataaagttggagtgttt  11753000  Previous    Next  AGI:  At4g22210.1    Description:  LCR85 (Low-molecular-weight cysteine-rich 85). Identical to Low-molecular-weight cysteine-rich protein LCR85 precursor (LCR85) [Arabidopsis Thaliana] (GB:P82794;GB:Q1PE59); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22212.1); contains domain PD032890 (PD032890) Range:  from: 11752480    to: 11752828    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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