Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <------ZmHOX2a(1)                   <---------TOE2(2)         --------->ALFIN1       <---------AHL20(2)       <-----------RAV1(1)      --------->AHL20(2)                        <-------TEIL  --------->YAB1   <---------TOE1(2)                                 <---------TOE1(3) <---------ATHB12 <---------HSFB2a(2)                                <---------TOE2(3) ----------->HVH21--------->HSFB2a(2)                               <-----------GT1 --->ANAC58       ------>ZmHOX2a(1)                                 --------->MYB52(1) --->ANAC58      --------->TOE1(2)                                --------->DOF5.7(2) --->ANAC46 <---------PCF2     --------->AHL20(2)   ---------->DOF2 <---------DOF5.7(2)   ccaatgacactgtgggactcctaggaaattccatttatttcagtggtactcatacaaagtcgaaggtcattaacgatacatttatcttcagtctcgagac  11739700                         --------->ATHB12               <---------ZAT14               <---------ZAT18                             <---------MYB46(3)               --------->ZAT14       --------->At4g35610   --------->HSFC1(2)          <---------WOX13(1)               --------->ZAT18       <---------At4g35610   --------->HSFB2a(1)       --------->ATHB12          ------>ZmHOX2a(2)          --------->ZAT2        <---------HSFC1(2)       <---------YAB1         <------ZmHOX2a(2)        <---------At4g35610     <---------TOE1(2) --------->ANAC46        --------->ARR14(2) <---------WOX13(1)       <---------ZAT18      <---------ZAT18        ------->TEIL    <---------YAB1              --------->ZAT18      --------->ZAT18          <--        <---------ARR14(2)>>>>>>>>>ARR2            <---------ZAT6        --------->ZAT14 --------->ATHB12   acagaagatggatccagtgcacaagtttgattgttcatcagctcaactctctagtgctcgatggttcttaccaagttcacacaaacttgattgatttcaa  11739800                                                       <---------ANAC46                                                       <---------ANAC58                                                       <---------ANAC58                                                       <------MYB83                                                       <------MYB46(1)                                                  --------->ALFIN1                                                <---------O2                                                --------->O2                                                <---------bZIP60(2)                                                <---------TGA1a                                                >>>>>>>>>>HY5                                                <---------ANAC58                                                <---------ANAC55(1)                                                --------->ANAC55(2)                                                <---------ANAC55(2)                                                <---------ANAC58                                                <---------ANAC46                                               ----------->STF1                                              <---------TGA2(2)                                             ----------->TGA1                                    ----                                           -------->HAHB4                               <---------ICU4                                           --------->YAB1                              --------->ICU4                                           <---------ICU4            --------->YAB1    <---------YAB1                                          <---------YAB1            <---------YAB1  ----------->GT1                                          --------->ICU4---------->ID1              <---------YAB1                                        <---------ICU4<---------MYB46(3)<---------AHL20(2)      -----          <---------TOE2(2)             --------->YAB1--------->MYB46(2)--------->AHL20(2) --------->YAB1   <<<<<<<<<TBF1      <---------YAB1   --------->ICU4 <---------AtMYB61<---------YAB1--------->YAB1<- --------DOF2   <---------YAB1     <---------ATHB12   --------->MYB111(1)    <-----------GT1    <----   ctttcttcttcatatgttatttttctgattttctctaatgaataatgatgacgtgtttggtgttttagttattataaattaacaaaatgataattgtaaa  11739900         --------->AHL20(2)         <---------AHL20(2)                --------->At4g35610 ----->ATHB12                     --------->MYB52(2) ---->ICU4               --------->MYB46(3)<---------At4g35610 --------WOX13(1)  ---------->DOF2--------->ATHB12                  --------->GLK1(1)        <------- -----YAB1<---------AHL20(2)  ----------->GT1 ---------->DOF2   <---------MYB59       ------------>CBF   gattgatgaaatttttttgtcaaaagaacgactggttaattgggccgatgaagcccatagaaacgacctgatttcttatgaaataaaacccaatgggtca  11740000                                                      --------->ANAC58                                                      ----------->GT1                      <---------TOE2(3)               --------->ANAC55(1)                      <---------TOE1(3)               --------->ANAC55(2)               <---------TOE1(2)                      <---------ANAC55(2)               <---------TOE2(2)                      --------->ANAC58              ------>ZmHOX2a(1)                      <-------TEIL                                ----             --------->TOE2(2)     <---------WRKY18(1)--------->ANAC46               --------->ANAC58       ------------>CBF   <-------TEIL          --------->AHL20(2)                   --------->ANAC58  <---------YAB1      --------->MYB59           ----------->TBP  *TSS --------->ANAC58           ---- ----HVH21   --------->TOE1(2)--------->ARR11(3)<---------AHL20(2)    --------->ANAC58     --------->YAB1   cattacaaatgcaatcctaggttttaggttcagaccttgactcttgtaatataaatacgtaacttctgtgctacgacaaaacatttcaagtaagcataac  11740100                                                            ------>ZmHOX2a(2)                                                           <<<<<<<<<GATA-2                                                           <<<<<<<<<GATA-3                                                           <<<<<<<<<GATA-4                                                           <<<<<<<<<GATA-1                                                           <------ZmHOX2a(2)                                                          --------->ARR11(3)                                                       <---------HSFB2a(2)                                                       --------->HSFB2a(2)                                                     ==============HOX2a_HOX2a                                                     ------>ZmHOX2a(1)                                                     =============HOX2a_HOX2a                                               <---------HSFB2a(1)                                               --------->HSFB2a(1)                                               --------->ZAT2                                               --------->HSFC1(2)                                               <---------ZAT2                                               --------->At4g35610                                               <---------At4g35610                                               <---------HSFC1(2)                                             <------NtERF2<---------ARR11(3)                                           --------->ETT(1)<---------GLK1(1)                                           <---------DEAR3(1)                    <---------ALFIN1                                         <-----------HVH21<---------AGP1 <---------ZAT6        ---------->DOF2                ===========================HOX2a_HOX2a    --------->ANAC46 ----->TOE2(3)             <-------TEIL------>ZmHOX2a(1) <---------CCA1(2)       --------->ANAC58 ----->TOE1(3)   <-----------RAV1(2)   ============================HOX2a_HOX2a   --------->ANAC58   cctaattctcaaaagcgtctcagacgagattcatcccattcctggtcggagcttcctctagatctcttggatttagtgttccaacgcctcaattttgcta  11740200                                                      ----------->HVH21                                                    <---------ANAC58  ------>ZmHOX2a(2)                                                    <---------ANAC58 <------ZmHOX2a(2)                                                    --------->ANAC55(2)    XXXXXXXXXXXXXXXXXXX>MIR3434             <---------ARR14(2)                     <---------ANAC55(2)  <---------MYB52(1)      <---             --------->ARR14(2)            <---------HSFB2a(2)      --------->ARR11(3)           ----             --------->GLK1(2)             --------->HSFB2a(2)      <---------ARR11(3)        -------      ------->GAMYB                   --------->At4g35610           <---------ARR14(2)       --------     --------->MYB46(3)               <---------At4g35610           --------->ARR14(2)    --------->LBD16   atttccaacgagccaaatctgtgtgttcgtcttggtactctgcttcgagacaatgcgtgaccaaaactaagatcccttggctgattctattccccaaaag  11740300                                                                     <---------ANAC46                                                                ------>ZmHOX2a(2)                                                               <------ZmHOX2a(2)                                                              <---------ARR14(2)                                                              <---------AGP1                                                              <---------ARR14(3)                                                              --------->ARR11(3)                                                              <---------ARR11(3)                                                              --------->ARR14(2)                                                              --------->AGP1                                                              --------->ARR14(3)                                                            ----------->ARR10                               --------->LBD16          --------->ANAC58                              --------->LBD16           --------->ANAC46 -------ID1            ------>ZmHOX2a(1)      ----------->GT1 <-----------ARR10 ------->GT1     --------->ANAC58 =====================================HOX2a_HOX2a -->DAG2         --------->ANAC46 ====================================HOX2a_HOX2a -->DOF2         --------->ANAC58 <------ZmHOX2a(1)     --------->ANAC58                            -   cgaaaaaaacaattcattcacgctcctcaatcccgaggaaaaacacaaacgttacaaaacgcaagatcttggtgtggaatttgcgaagtgtgtttgtata  11740400                                                                               ------->TEIL                                                                               -------->P                                                                              <-----------GT1                                                                            ====================HOX2a_HOX2a                                                                            =================HOX2a_HOX2a                                                                            <------ZmHOX2a(2)                                                                           <-----------ARR10                                                                          <------ZmHOX2a(1) ---------                                                                   --------->LBD16         --------->ALFIN1                                                                  --------->ANAC58       ------>ZmHOX2a(1)                                ---------->DOF2                   --------->ANAC46     ----------->RAV1(2)                              <-------TEIL                        --------->ANAC58    ------>ZmHOX2a(1)                             --------->CCA1(2)                   --------->MYB46(3)------>MYB83 ------->P         ------>ZmHOX2a(1)      --------->TOE2(3)      <---------LBD16   ------>MYB46(1)   gcaacctatggaagttggctccttatgcaagattcaaagtgtaatctaaacattttgaatccattcacccgcgagaggatcaaccttcctcctgtggagt  11740500                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                              -------             ---------->DOF2                                                                  <------         --------->ANAC58                                                                     <------   ------->MYC3                          <---------GLK1(1) --------->YAB1                     -------   <-------MYC3             --------->YAB1           --------->ANAC46                        <------ZmHOX2a(1)  --------->O2 <---------TOE1(3)     <---------WOX13(1)  <-----------HVH21        --------->CCA1(2)  <---------O2 <---------TOE2(3)  <---------YAB1     --------->ZAT6              --------->AHL20(1) >ZAT14  --------->ANAC58  <---------ATHB12        <-----------GT1              --------->AHL20(2)---   cacaacgtggcaaggtaaaggttagacgaatcatagatgatagatttcgcatttcacactatcacatcggaagcgagtccaaatatatgagtataggatc  11740600  Previous    Next  AGI:  At4g22180.1    Description:  F-box family protein. Identical to Putative F-box protein At4g22180 [Arabidopsis Thaliana] (GB:O49624); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G22165.1); similar to At3g03730-like protein [Arabidopsis lyrata] (GB:ABY60296.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 11738586    to: 11739794    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g22185.1    Description:  pseudogene, similar to P0537A05.16, similar to protein; blastp match of 28% identity and 3.1e-07 P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16 {Oryza sativa (japonica cultivar-group)} Range:  from: 11740065    to: 11741246    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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