Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    --------->At4g35610  <---------At4g35610           --------->ANAC46 -------MYB59                   --------->ANAC58                  --------->ANAC58 ------>AtMYB61                 --------->ANAC58                  --------->ANAC46 ---->ARR11(3)             <----------DOF2         <-----------GT1--------->ANAC58 -----ARR11(3)          ------>MYB46(1)      <----------DOF2    --------->ZAT6 ->DOF2                 ------>MYB83        --------->TOE2(3)  --------->ZAT14      --------->AtLEC2   cctaagcagacattgactccataaccaagctttcaagcaatcccttcctttataaaccattactcaacactcaaatgcccaaaatcatgcagagaaatgt  11730100                                                              <-----------------AGL1              <---------YAB1                                 --------->ZAT18           ----------->TGA1                                  ------>NtERF2           ----------->HVH21      --------->ANAC58           <---------ZAT18         <---------ANAC55(2)      --------->ANAC58        <------MYB46(1)                ------>ZmHOX2a(1)         --------->O2      <---------YAB1                 <---------MYB46(3)        --------->At4g35610         --------->TGA1a --------->YAB1<---------ALFIN1   <------MYB83              <---------At4g35610         <---------O2   <---------ATHB12              <-----------RAV1(1)           <---------ZAT2         --------->ANAC55(2)--------->AHL20(2)      <----------DOF2                 --------->ZAT2   ctaaatttgacaagtgacgataacaaatgataatataagcactacctctcacaactttgttggtgcccttgatggtataagagtccagctccttccttcc  11730200                    <-----------RAV1(2)                  ------>NtERF2                 --------->REM1(1)                <------NtERF2               ----------->RAV1(1)               <---------ATERF1(1)                                                  --------->DAG2               ------>NtERF2  --------->ARR14(2)                                   ---------->DOF2               =================RAV                                          --------->AHL20(2)              ----------->HVH21                                          <------NtERF2             --------->ATERF1(1)           <---------ZAT2               <---------RAP2.6(3)             <------NtERF2    <---------ARR14(2)                        --------->LBD16             --------->RAP2.3(1)      --------->AtLEC2                 --------->RAP2.6(2)<------MYB83            <---------ATERF1(1)  --------->ANAC46                     <---------LBD16     <------MYB46(1)   cgtcttaattttggaggcgacaccaggtcgagttttcgccatggaagctagggtttttcgaaaactggttaagccggaataaaaaaaaagctaggttttt  11730300                --------->ATHB12                ===========================HOX2a_HOX2a                <------ZmHOX2a(1)              <---------TOE2(3)    --------->LBD16   --------->HSFB2a(2)   --------->ANAC46                         --------->ALFIN1           ------------------------>ANAC81   --------->LBD16 --------->ALFIN1     <------ZmHOX2a(1)          --------->DAG2   --------->HSFB2a(1)   <---------HSFB2a(2)              <------ZmHOX2a(2)             ---------->DOF2   <---------HSFB2a(1)  <---------LBD16<---------ARR14(2)<---------ARR11(3)        ----------->GT1    ----------->GT1  <---------HSFB2a(2)              --------->ARR11(3)      ----------->GT1     ----------->GT1  --------->HSFB2a(2)              <---------ARR14(2)  <---------MYB46(3)    ---------->DOF2---------   tgttcccggaatgtataaggattggggcttctaagaagatcaggatgtgtagatcgatgggtagagaaaaaaggagaagaaaaggaaaatcccagtgggg  11730400                                          --------->GLK1(2)                                         <---------ARR14(2)                                         --------->ARR14(2)                                         <---------GLK1(2)                              <---------HSFB2a(2)                              --------->HSFB2a(2)                                          <---------ZAT6                           --------->ARR14(2)                                            <---------At5g28300                           <---------ARR14(2)     --------->LBD16           --------->ARR14(2)                      ----------->GT1  ----------->ARR10           --------->ATHB12     <-----------GT1 >ALFIN1    <------ZmHOX2a(1)<---------LBD16     <-----------RAV1(2)        <---------ARR14(2)    ---   aagaagcgaagagaggaagacgaagagtaaatctggaaccctagattctctccaggtgaagaagatgagtcatttgcaaatttgggagttttactgttca  11730500                                                 <---------------AGL15                    --------->LBD16                                                <-----------------AGL1       --------->ANAC46                                  <---------AHL20(1)                         ------>ZmHOX2a(1)                             <XXXXXXXXXXXXXXXXXXXXMIR1886.1                ----------->RAV1(2)                           <----------DOF2      <-----------------AG       <---------ANAC58       <--                          <---------ANAC58      ------------>CBF           <---------ANAC58       ---                          <---------ANAC58     <-----------GT1             =================RAV  ----                      <---------MYB52(1)       --------->YAB1         <----------DOF2     --------->At5g28300                      <----------DOF2       --------->YAB1            <---------DAG2     ----------->GT1                     *TSS<------------------------ANAC81           <-----------GT1       --------->TOE2(3)                 <-----------GT1  <---------AHL20(2)            ----------->GT1        <---------At5g28300 ------->DOF2<---------AHL20(2)   --------->AHL20(2)          <------------CBF  ----------->RAV1(1)   caaagcccaattcatttttttgccctttgcttttattttatttctcttataacaattttggaaatattgttactttttcctgccacatttaccgtaaaat  11730600                                                        <---------AHL20(1)         --------->ALFIN1                               --------->ARR11(3)      --------->DAG2                            --------->ATHB12                                 ----     ---------->DOF2            <-----------RAV1(1)     --------->AHL20(1)  ---------->DOF2   ------- --------ID1                  <---------At5g28300 <---------WOX13(1)  ---------->DOF2        <------- -------->GT1             <---------ICU4       <---------YAB1     --------->ANAC58           -------- ------->GT1<---------ANAC46 <-----------GT1 <----------DOF2      --------->ANAC58           --------   gggaaaaaaaagtggctcgaatttcaaatttttactgtcgttttgaactttgattgaatattttgagcaagtaaaagtaaaagtttataggtgaaacagt  11730700        <---------AtLEC2  <---------AHL20(1)  <--------ATHB1  <---------ICU4  --------->ATHB51  --------->YAB1  --------->AHL20(2) <---------ATHB12 <---------ATHB51 --------->ICU4                              --------->ANAC55(2) ----->ZAT14                                 <---------ANAC55(2)                     <---------AHL20(2) ---->GT1                                 <---------YAB1                             --------->AHL20(2) --------AtSPL8                     <---------TOE2(3)                  <------ZmHOX2a(2) ------->AtSPL3                <---------AHL20(2)                     <---------ARR11(3) ------->AtSPL8               <---------AHL20(2)------->TEIL          --------->ARR11(3)   acaataattttcatggttattcaagttttttttttatttatgttatcatgtatttgagccatttactggcaagatcaatgtttatatttaaatctagaat  11730800            <---------AHL20(2)      <---------ANAC46      <---------ANAC58      <---------ANAC58                                      <---------------AGL15     <-------MYC2                                           --------------->AGL15     ------->MYC3                     <---------ICU4       <-----------------AG     <-------MYC3                 <-----------GT1        <---------ICU4     ------->MYC2              <---------ICU4         <---------ICU4                  --------->YAB1    --------->ANAC58        --------->YAB1            --------->YAB1                 <---------ATHB12    --------->ANAC58  <---------At4g35610            --------->ICU4            ------->TEIL ---------   ggtagcacgcgtgtttaatctttcggctaatgaaaattactaattgtttgatacaataatcactagttttggtatttgatgaaactaatcaaaacattag  11730900                             ------->TEIL                           --------->TOE2(2)                           --------->TOE1(2)                          --------->ANAC55(2)                          --------->ANAC46                         <-------TEIL                         <---------------AtSPL3                         --------------->AtSPL3                         --------------->AtSPL8                         <---------------AtSPL8                       --------->ARR14(2)                       <---------ARR14(2)                      --------->CCA1(2)                      <---------GLK1(1)                <---------ICU4                                                           <---------ARR11(3)               --------->ICU4<-------TEIL                                               --------->YAB1               <---------ATHB12                                               ---------->DOF2             --------->WOX13(1)                                             --------->YAB1     <-----            --------->AHL20(2)                                          <---------AHL20(2)<---------CCA1(1)            <---------AHL20(2)                                          --------->AHL20(2)<---------RVE1(1)    ------->TEIL--------->YAB1        ---------->DOF2                  --------->AHL20(2)--------->ARR11(3) >TOE2(3)  --------->AHL20(2)--------->SPL7     --------->MYB59    ------->TEIL        <---------ATHB12   tgaatgaaactaaattaatcatggatatacgtacgtccaaaatagccagtttggcacagcaataacatgaatatttaatcaaaagttcaatgatattttg  11731000  Previous    Next  AGI:  At4g22140.1    Description:  DNA binding. similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75916.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) Range:  from: 11728537    to: 11730521    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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