Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                  <--                                     --------->ARR14(2)                                           ---     --------->LBD16                 --------->ARR11(3)        ------>ZmHOX2a(1)                 ---- <---------ARR14(2)                  <---------ARR11(1)    <-----------GT1          <---------ANAC58- --------->ARR14(2)                  <---------ARR14(2)    <---------ARR11(3)       <---------ANAC46< ---------GLK1(1)                   <---------CCA1(2)      --------->ARR11(3)       <---------ANAC58- ------>ANAC55(2)   <---------MYB46(3)               --------->TOE2(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---->AHL20(2)    <---------At4g35610<---------ARR11(3) --------->YAB1<-----------HVH21   --------->ANAC46   acatatccgaagagggcgatagctgttgatattatcccaaatcttgttgagttttccataatatccttccactgtcataccctcttgcttgcaagtcgcg  11680700            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->REM1(1)   ------>NtERF2                                                                      --------->At5g28300 ------>ZmHOX2a(2)                                                                    <-----------HVH21 ------->ARR14(2)                                                                 --------->MYB52(1) ------->AGP1                                                                    ----------->HVH21 ------->ARR14(3)                                              --------->ANAC46--------->bZIP60(2) --------ARR11(3)                                     --------->ARR14(2)       --------->O2 --------ARR14(2)                                     <---------ARR11(1)       --------->REM1(1) --------ARR14(3)                                     <-----------ARR10        --------->TGA1a ------->ARR11(3)                                     --------->GLK1(2)        --------->ANAC46 -------GLK1(1)                                       <---------ARR14(2)     <---------ALFIN1 <------ ------>GLK1(1)                                       ------->TEIL        --------->ANAC46    <------ ------->ARR10 <---------YAB1                        <---------ARR14(1)   --------->ANAC58   -------- -------->ARR14(1)                       ================================================bZIP_DOF ------ZmHOX2a(2)        ---------->ID1  ---------->DOF2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<- -------->CCA1(2)<---------GLK1(2)    ----------->GT1<---------GLK1(2)    --------->ANAC58   <-------   agatccgccttcatcttctgattctttggcccattagaaacagaaaaacgcttccgaatctgttcccacaagtctctcgccacatcacggtgagagatat  11680800                                                                           ==========================                                                                          <------ZmHOX2a(2)                                                                          ===========================                                                                          --------->CCA1(2)                                                                         <---------AGP1                                                                         <---------ARR14(2)                                                                         --------->ARR14(2)                                                                         --------->AGP1       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           <---------HSFB2a(2)      --------->ZAT2                                                  <---------------AGL15      <---------ZAT2                                                  --------->HSFC1(1)      <---------At4g35610                                        <---------ATHB12      --------->At4g35610                                       ------>MYB46(1)   <---------ZAT2                                               ------>MYB83   --------->At4g35610                           --------->TOE2(3)    --------->HSFB2a(2)   <---------At4g35610                    ------>MYB83  --------->TOE2(3)<---------ARR11(3) ---CCA1(1)                               ------>MYB46(1)<---------MYB52(1)------>ZmHOX2a(2)       <- ---RVE1(1)                              ----------->RAV1(1) --------->MYB46(3)                  <--- ->ARR11(3)                             --------->AtMYB61--------->DOF5.7(2)       <---------HSFC1(2) ----------HVH21        --------->At4g35610 ---------->DOF2<---------DOF5.7(2)     --------->HSFC1(2) --ARR11(3)        --------->YAB1 --------->ANAC46      --------->TOE1(3)--------->ARR11(3) <--------   ttgtcagcagctctgagtcaatagtcatcttcatccaagagaccaacaaagcattaatcgttaaccaatcttctagatctggagaaccatctagtggttg  11680900                                              ------>NtERF2                                              <---------RAP2.6(3)                                             --------->DEAR3(1)                                           ------->GAMYB                                     --------->RAP2.6(2)                                     --------->ANAC46                                <---------HSFB2a(2)               <---------ALFIN1             --------->ANAC58   --------->HSFB2a(2)             <---------ALFIN1             <---------TOE2(3)  ------>ZmHOX2a(1)              <---------ZAT18   <---------MYB46(3)    <---------DAG2   --------->DEAR3(1)   --------->ZAT18 =====HOX2a_HOX2a        <----------DOF2---------->DOF2    ------->MYC3 =====HOX2a_HOX2a     ------>MYB46(1)--------->ANAC58      <-------MYC2 -----ZmHOX2a(1)      ------>MYB83<---------WRKY18(1)      ------->MYC2                    --------->ARR14(2) ------TOE2(3)      <---------MYB59  --------->ANAC58<-----------GT1                       <---------ARR14(2) -MYB46(3)   --------->ANAC58  --------------------->WRI1  <-------MYC3      <---------AHL20(2)   aggaatggttccatcaaggaaaccaaactttttcctagaccgcaacgccgtcttgaaaccacatgcccactcttcatagttatttgtcttcagtatcgga  11681000                                          ----------->GT1                                         --------->ANAC58                                         --------->ANAC46                                         --------->ANAC58                                        --------->SPL1(2)                                    --------------->AtSPL3                                    <---------------AtSPL3                                    <---------------AtSPL8               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              --------->LBD16      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             --------->HSFB2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->At4g35610   <---------MYB52(1)                                            --------         <---------At4g35610  <---------RAP2.6(3)                                     --------->ALFIN1         --------->ZAT2       <-------GAMYB                                         <---------MYB46(3)         <---------ZAT2      <---------ANAC46                                      <---------AtMYB61        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      --------->ALFIN1    <------ZmHOX2a(2)      ------>NtERF2--------->SPL7                             <---------DEAR3(1)   <---------ARR11(3)   <---------ZAT2 <---------SPL1(1)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->ARR11(3)   <---------At4g35610            <-----------HVH21         <---------MYB46(3)  --------->At4g35610   --------->ZAT2 --------->SPL1(1)    --------->SPL7      --------->ALFIN1  <---------At4g35610   --------->At4g35610           <---------ANAC58          <---------DEAR3(1)  <---------GLK1(1)     ----------->RAV1(2) xxxxxxxxxxxxxxxx>smallRNA(i)        <---------AtMYB61  --------->GLK1(1) <-----------HVH21 <---------SPL7  <---------ANAC58       <---------AtMYB61 ------   tgggagatcacagctcccgaattgtcagctgccgttaagtcgtacggcaaaattgtgcgtcggacctcaattacagatggaggtggtggtggagcatcag  11681100                                                                                                 <---                                                                                                <----                                                                                           <------MYB46(1)                                                                                           <------MYB83                                                                                          xxxxxxxxxxx                                                                                          --------->MYB59                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                    --------->ZAT18                    <xxxxxxxxxxxxx                                                   <---------ANAC58                    <xxxxxxxxxxxxx                                                   <---------ANAC58                <xxxxxxxxxxxxxxxxx    *TSS xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->ZAT18                  <---------REM1(1) ->At4g35610                 ------------>CBF  <------------CBF                   --------->ARR11(3) --->ANAC46   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------ZAT18                 <---------ARR11(3)   ccatagcttcagagaaaactcacttgaaatactcaattcgaaaaacccagattgcgctctgataccatgacaaacttaagacaagatgtagtttggttta  11681200                                         ---------->DOF2                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->TOE1(3)                         -               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->CCA1(2)                               -            <---------YAB1        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <       ---------->ID1           <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <--       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------ARR11(3)                             ---      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <---------ANAC58     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           ---------->DOF2    <------ZmHOX2a(1)   <---------ANAC58  <---------ANAC46    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <----------ID1 --------RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->TOE2(3)             <xxxxxxxxxxxx -----TOE2(3) ---------->DOF2 --------->TOE2(3)    --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxx>smallRNA(le3)   <---------MYB59  ---------->DOF2      --------->ZAT18     xxxxxxxxxxxxx xxxxxxxxxxxsmallRNA(si3)  <-----------GT1 --------->ANAC58 ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------ZAT18  <---------ZAT14< xxxxxxsmallRNA(si3) ----------->GT1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ICU4   ----   tgttgtcttgtcttattaaagaggcgttaaaaccttacttatacaaagcaaaagatataacctaaagtattgcacaaaggaaatgactaaacaggacaaa  11681300                                                                     <---------AHL20(2)                                                                     <---------ICU4                                                                     --------->AHL20(2)                                                                    --------->AHL20(2)                                                                    <---------ATHB12                                                                <---------ATHB12                                                                --------->MYB46(3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           ------>MYB83              --------->At4g35610                              --------->ANAC58              <---------At4g35610                              -------->P       --------->WRKY38(1)       --------->ANAC58              ------>MYB46(1) -------->ARR11(3)      <---------AHL20(2)                    --------->MYB55(1) -------->AHL20(1)      --------->ARR11(3)                   --------->MYB46(3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <---------MYB46(2) -------AHL20(1)        --------->AHL20(1)                   <---------MYB111(2) ------>AHL20(1) --------->MYB52(1)            <---------ALFIN1--------->ANAC58            <---------ICU4 xxxxxxxxxxxsmallRNA(le3)        --------->ANAC58   --------->AHL20(2)             ------>MYB83 xxx>smallRNA(le3)      <---------AHL20(1)  --------->REM1(1)<---------MYB111(1)   -------->P <------ ---------AHL20(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <-----------GT1          ------>MYB46(1) ----->AHL20(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <----------DOF2 --------->WOX13(1) --------->TOE2(3)   tatatattgttgactaagctaactaaaatattgacgagcaatagcttcaacacttttaatataccaaccaattaatactggaccctaccttcatttttac  11681400                  <---------ANAC58                  <---------ANAC58                             ------->TEIL              <---------ANAC58                                 --------->ARR14(2)              <---------ANAC58                                 <---------ARR14(2)           <---------WOX13(1)                                 <---------CCA1(2)  --------->DAG2          >>>>>>>>>ARR1                                 <---------ANAC46        ---------->DOF2          >>>>>>>>>ARR2                                 <---------ANAC58    --------->ANAC46        --------->ICU4                                  <---------ANAC58 <-------TEIL        <---------YAB1                  --------->ANAC55(2)<---------TOE1(2)--------->ANAC58  <---------YAB1  <---------ANAC46      <---------ANAC55(2)<---------TOE2(2)--------->ANAC58 <-------  <---------TOE2(3)               <---------WOX13(1)------->TEIL      <------MYB46(1)     <---------ANAC58 -----GT1--------->ATHB12  --------->ATHB12   <---------AHL20(2)      <------MYB83        <---------ANAC58   tactatggttatgattgtttgcgagtaaatgatttgattaatatgtattatatgtatgtcgtatgtatctgtaggtacaagaaaaagttggagcttgact  11681500                                                             --------->AHL20(1)                                                             --------->ARR11(3)                                                             <---------AHL20(1)                                                           --------->AHL20(1)                                                           <---------AHL20(1)                      <-                                                           --------->ARR11(3)                      --                                                  ----------->GT1                               <----                                                ---------->DOF2                     --------->ZAT14<-                                               <---------AHL20(2)                   --------->REM1(2)  --------->GLK1(1)                       <---------YAB1   <---------ARR11(3)       <---------ZAT14<- <---------ARR11(3)             <-----------RAV1(1)     --------->AHL20(2)--------->ANAC46      ----- --WRKY18(1)       ----------->TGA1<---------ANAC46 ----------->GT1   <-----------GT1          <-----   cgagatttctatctgatttttatgacgaaatcaaatgttgtgttcttatttaaagtgaaaaaatattttgttttactagccatcagtgtagagtttttct  11681600  Previous    Next  AGI:  At4g22040.1    Description:  transposable element gene. copia-like retrotransposon family, has a 5.3e-193 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays) Range:  from: 11676672    to: 11681104    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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