Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->YAB1                                       <---------ICU4                                      <---------YAB1                                      --------->ICU4                                   <---------YAB1       <----------DOF2           --------->YAB1               <---------DAG2      <---------ICU4   --------->MYB52(1)                     <----------DOF2               <-------- ----------GT1      --------->ANAC58  <---------ATHB12     <-----------GT1  --------->AHL20(2) >ANAC46            --------->ANAC58--------->YAB1  <-----------GT1         <---------AHL20(2) >ANAC58   <---------ANAC58     <---------YAB1  <----------DOF2          --------->AHL20(2)<--------- >ANAC58   <---------ANAC58  <-------TEIL   <----------DOF2<---------AHL20(2)      ----------->GT1   tttactcatctttccttggccctagcaacggttcatgataatcattctttctttttacaatttactttttcgaaataaaaaattgtagtaaaattacagt  11655200                          --------->ALFIN1                   <---------ZAT14                   --------->ZAT14            --------->ARR11(3)                                                              <xxxxxxxx            --------->GLK1(2)                           --------->AHL20(2)                 <xxxxxxxxx            <---------ARR11(3)                          <---------AHL20(2)            <-----------HVH21           --------->CCA1(1)                          <---------AHL20(2)           <----------DOF2 -At5g28300--------->RVE1(1) ----------->RAV1(1) <---------AHL20(2)  ----------->RAV1(1) ---------->DOF2 --GT1   --------->AHL20(2) <------NtERF2       --------->AHL20(2)------->GAMYB <-----------GT1   ttcaactaaaaaaaaatcttgtacagaggtgccacaaaaatgcaattcaattttatataaaaatacaacgacaacaaatttgttactttgtcaaagcgga  11655300                   --------->SPL7                   <---------LBD16                 xxxxxxxxxxxxxxxx>smallRNA(s)                <---------ANAC58                <---------ANAC58               <-------TEIL       ----------->GT1                           --------->AHL20(2)       --------->ANAC58  --------->MYB46(3)     --------->AHL20(2)                       ----------->RAV1(2)       --------->ANAC58<---------ARR14(2)       <---------AHL20(2)              --------->ICU4 xxxxxxxxxsmallRNA(le3)--------->ARR14(2) ----------->GT1                     --------->YAB1 xxxxxxxxxxxxxxsmallRNA(le3)          <---------YAB1              <xxxxxxxxxxxxxxxxsmallRNA(s)   ttatttggcacgaaaaattcgtgcggaaccgctacatatcatttttgtaaataattttcttcaaaattggctcgtttgagtcataaataacacctgatga  11655400                          <----------DOF2                       <-----------GT1                <---------AHL20(2)               --------->AHL20(2)               <---------AHL20(2)                        ---------->DOF2      --------->ANAC58           --------->AHL20(2)                 ---------->DOF2                 <----------ID1           <---------AHL20(2)               --------->MYB46(3)                --------->ANAC46          --------->AHL20(2)       <----------DOF2      <---------AHL20(2)    --------->ANAC58  -----   caaaaaaaaaaaaaaaatttttttgttactttgtaaacttttgctaaccaaagcctatataaaggcccaattagcccaaaacgacacaaaaatgtgtgaa  11655500                  <---------TGA1a                  <---------ANAC55(2)                  <---------ANAC46                  --------->ANAC58                  <---------ANAC58                  <---------ANAC58                  --------->ANAC58                  --------->TGA2(1)                  --------->TGA1a                  <---------bZIP60(1)                  --------->bZIP60(1)                  <---------TGA2(1)                   --------->YAB1                  --------->ANAC55(2)                <---------ATHB12                  <---------O2                       --------->MYB46(3)                  --------->O2                      --------->ANAC46      --------->GLK1(1)      ----                 ----------->STF1                  --------->WOX13(1)--------->MYB52(1)         <----                <---------TGA2(2)        <---------ANAC58       --------->ICU4                  -----               ----------->HVH21         <---------ANAC46       <---------YAB1                  <----               ----------->TGA1          <---------ANAC58     --------->YAB1               <---------ICU4             <---------MYB46(3)       <---------GLK1(1)      --------->AHL20(2)           -----------         <---------AtMYB61            --------->GLK1(1)  --------->MYB46(3)               <---------- ------>GT1 --------->ALFIN1 <---------ZAT6      ------------>CBF--------->YAB1          --------->ANAC55(2)   gaaataaacagatggtggtgacgtaagacaagtgtaagagatttcttgtaatccaatcaacaaataataataaacgaattccaagtggtttacttattcc  11655600              --------->ANAC58              --------->ANAC46          --------->ALFIN1         --------->LBD16        <---------ANAC58        <---------ANAC58        <---------ANAC55(1)        <---------ANAC46                                  <----------DOF2        <---------ANAC55(2)                         <---------AHL20(2)     --------->ARR14(2)                            --------->AHL20(2) *TSS<---------ARR14(2)                         <--------HAHB4 ----->LBD16<--------P<---------MYB52(1)        --------->ATHB51 -----HSFC1(1)--------->ANAC58  --------->TOE1(3)  <---------AHL20(2) ---->HSFB2a(2)    --------->MYB46(3)           <---------ICU4 -----HSFB2a(2)    <---------ATHB12            --------->ICU4 ---->AGL15--------->ZAT14<------ZmHOX2a(1)    <---------YAB1--------->YAB1  ----------->HVH21 -----AGL15--------->REM1(2)    --------->TOE2(3) <---------YAB1      <----------DOF2              <-   agaaacagttccgtgtaggcaaccattaggaaaaccctaactaaattccattattaatttcttttataatccctttctcttgacattgacttctctctct  11655700                                                                                <---------LBD16                                              --------->TOE2(3)              <<<<<<<<<TBF1                                            ------->TEIL                    --------------->AGL15                               <---------ARR11(3)   XXXXXXXXXXXXXXXXXXXX>MIR841B*<---------ANAC46                     --------->YAB1       ------->GAMYB   --------->MYB46(3)<---------------AGL15    <<<<<<<<<TBF1   <---------ATHB12     <---------MYB52(2)       <---------ARR14(2) <--------P --------GLK1(2)  --------->WOX13(1)     --------->MYB46(3)       --------->ARR14(2)<---------MYB52(1)   cgattcttcttctccagtttcaatcaaactcaatttcttctcaacgaaccctaatttccaacaaatcggattcagtttcttcttcgggtatgtttcttct  11655800                <----------DOF2               ------>ZmHOX2a(2)              <------ZmHOX2a(2)                                                   <----------DOF2              <---------RVE1(1)                                                  ------>ZmHOX2a(2)             --------->ARR11(3)                                                  <---------ICU4             <---------ARR14(3)                                                 <---------YAB1             --------->ARR14(3)                                                <---------ARR11(3)             <---------ARR11(3)                                              <---------YAB1             --------->ARR14(2)                                            -------->HAHB4             <---------ARR14(2)                                            <---------ICU4             --------->AGP1                                                --------->YAB1          <---------HSFB2a(2)                    <------ZmHOX2a(2)        <---------ATHB51    <---------AHL20(2)                          --------->ARR14(2)        --------->ICU4  <---------ANAC46    --------->AHL20(2)                          <---------ARR14(2)      <---------ICU4<---------ANAC58    <---------AHL20(1)             --------->MYB52(2)<---------At4g35610--------->YAB1<---------ANAC58    --------->AHL20(1)      <---------LBD16     --------->AGP1         --------->AHL20(2) <---------ANAC58   <---------ATHB12  <---------TOE2(3)        --------->LBD16          <---------AHL20(2) <---------ANAC58   --------->AHL20(2)<---------TOE1(3)       --------->LBD16 <------ZmHOX2a(2) --------->ARR11(3)   caccaataaattcgagatcttttagggttttctgggtttgtttctcccccgatctagcagacgatcgagtttattaattatgatctttgcttgcttgaaa  11655900                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                           --------->GLK1(1)                                          <---------ARR11(3)                                          <---------AGP1                                          <---------ARR14(3)                                          --------->ARR14(3)                                          --------->ARR11(3)                               <---------GLK1(1)           <---------MYB52(1)                      --                               --------->GLK1(1)   ------->GAMYB                                   <-                 --------->ANAC58         <---------ARR14(2)                 <----------DOF2       <-                 --------->ANAC58         --------->ARR14(2) --------->MYB52(2)                    <-   ttcgcagagactaatcgaatcgcaatggctaagagttccttcaagatctctaaccctctcggtttgtttcttcaaatccctttctcatcgaattttcaat  11656000                                                                                   <------MYB46(1)                                       <---------ANAC58                            <------MYB83 ------->ANAC55(2)         ----------->GT1     ------>ZmHOX2a(2)                 <---------WOX13(1) --------ANAC58        --------->GLK1(1)     --------->ARR11(3)                --------->ATHB12     < --------ANAC55(2)     <---------GLK1(1)<----------DOF2                       <---------YAB1       -- --------ANAC58  --------->GLK1(2)     <---------ANAC58    <---------YAB1   --------->YAB1   <------ZmHOX2a(2)   tacttgattttttgttgagtttctgaattctgttaaaacttgctttagatcgtgtatggttttgattttggaactcaattttgattggttttgggatcag  11656100  Previous    Next  AGI:  At4g21980.1    Description:  APG8A (autophagy 8A). Identical to Autophagy-related protein 8a precursor (ATG8A) [Arabidopsis Thaliana] (GB:Q8LEM4;GB:O65447;GB:Q8S928); similar to ATG8B (AUTOPHAGY 8B), microtubule binding [Arabidopsis thaliana] (TAIR:AT4G04620.2); similar to ATG8B (AUTOPHAGY 8B), microtubule binding [Arabidopsis thaliana] (TAIR:AT4G04620.1); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); contains InterPro domain Light chain 3 (LC3) (InterPro:IPR004241) Range:  from: 11655601    to: 11657046    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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