Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               ------->TEIL                                                             --------->ARR11(3)             ---------                                                             <---------AHL20(1)             <--------                                                             --------->AHL20(1)             <--------                                                          --------->AHL20(2) <-------TEIL  <---------                              <----------DOF2     --------->TOE2(3)      <---------------AtSPL8                   --------->ZAT18               --------->ATHB12        --------------->AtSPL8                   ----------->HVH21             --------->YAB1         <---------ICU4     ==========                 <---------At4g35610             <--------HAHB4      --------->YAB1        <---------                 --------->At4g35610            <---------ATHB12  --------->TOE2(3)       ---------->ID1 <----------DOF2 --------->ZAT2                 <---------YAB1   ----------->GT1         <-----------GT1   cttcttttttgactaaacgagctcacagttctctttctcatcacatctctatcattagaaaaaaatattgttaataatgtacatgtttttttttcttttt  11569400                                                                            --------->ZAT6                                                                          ------>MYB83--------->AHL20(2)                                                                          ------>MYB46(1)                                                                         --------->MYB55(1)                                                                        <---------MYB52(2)                                                                        <---------MYB111(1)                                                                        --------->AtMYB61                                                                        <---------MYB46(2)                                                                        <---------MYB111(2)                                                                       --------->ANAC55(1)                          ----------->GT1                              --------->ANAC58 ------>AGL15       --------->YAB1                                     --------->ANAC46 --DOF2            <---------------AGL15                 ----------->GT1<---------MYB59      -------- -------AGL15      --------------->AGL15               ---------->DOF2 --------->ANAC58---------->DOF2 --------AGL2     --------->ANAC46               ------->TEIL          <---------ANAC55(2) <---------ARR11(3) ==================================MADS_MADS <---------TOE1(2)--------->AHL20(2) --------->AHL20(2) --------AGL3--------->ARR14(2)        <---------GLK1(2) <----------ID1--------->ANAC55(2) --------->ARR11(3)   ttggggtcaaatttggattcactcaaaatagttaaaacatagaatcccatgtatcaaaaaagaaaaaaataacacctaaccctataaataaaagatttta  11569500            <---------TOE1(2)         ------>ZmHOX2a(2)        <------ZmHOX2a(2)       <---------AGP1       <---------ARR14(3)       --------->ARR11(3)       --------->ARR14(2)       --------->ARR14(3)                            <---------ICU4       <---------ARR11(3)                        <---------YAB1       <---------ARR14(2)                      --------->YAB1                    --------->ARR14(2)      --------->RVE1(1)                       <---------YAB1                     <---------ARR14(2)   ---------->DOF2                     <---------ANAC58                     --------->AtLEC2   --------->YAB1      <---------YAB1  <---------ANAC58                  <---------ATHB12 ->AHL20(2) <---------TOE2(2)          <---------ANAC46            <-----------GT1   tacaataaagatcttatgtttttttatcagagaaaaacatgtcttgtttttataattctgacttcttagtaacaaatcatgcatatatgaaattcaacaa  11569600                                                                    <-----------HVH21                                                                 <---------bZIP60(2)                                                                 --------->TGA1a                                                                 <---------TGA1a                                                                 ====================================                                                                 <---------ANAC46                                                                 <---------ANAC58                                                            --------->At4g35610                                                     <---------AHL20(2)                                                     <---------ATHB51--------->ALFIN1      --------->REM1(1)                                                     --------->AHL20(2)        --------->ANAC58                  ----------->GT1             --------->YAB1<---------At4g35610--------->ANAC46      <---------------AGL15                  <---------ATHB12    <---------ANAC58      --------->At4g35610     <-----------------AGL3  <---------AHL20(2)  --------->AHL20(2)--------->ALFIN1   --------->ANAC58     ----------------->AGL3 --------->AHL20(2)----------->GT1  <------ZmHOX2a(1)      --------->ANAC58   ------->TEIL  <-----------------------TaNAC69(2) <---------AHL20(1)         --------->ANAC58     -   atttgaacccaaaaatagagaggtgaaatattaaatgaccaaaacaaatgataaaataattcagaggacgtgtgagggaacaagccagaagctacactat  11569700                                        --------->YAB1                                     --------->REM1(1)                                     --------->YAB1                             --------->HSFB2a(1)                             <---------HSFB2a(1)                                  --------->bZIP60(1)                             ------>ZmHOX2a(2)                                    <---------bZIP60(1)                           <---------ARR14(2)                                     <---------ANAC46                           <---------ARR11(3)                                  ----------->HVH21            --------->WOX13(1)<----------DOF2                                 <-----------HVH21          ------------>CBF <---------AGP1                                    *TSS <---------TGA1a      ------>ZmHOX2a(2)    --------->ARR14(2)                           ----------->HVH21       <----     <------ZmHOX2a(2)     --------->ARR11(3)                         <---------At4g35610       -----    <---------ARR11(3)    <---------CCA1(2)  --------->At4g35610      ----------->RAV1(2)      ------    --------->ARR11(3) <---------MYB52(1)  <---------ICU4             --------->At4g35610      <----- ==========bZIP_DOF --------->MYB46(3)  <---------ICU4     ==========================bZIP_DOF  <----- --------->DOF2--------->TOE2(3)  --------->TOE2(3)        <----------DOF2 <---------TGA1a     ------   cgaaaagatcgcatcaatctcaaccgttggatctttccttcatcatcatctctctctctctctttctcttccatctgacctgtgatgtgagtttgcagat  11569800  --------->ANAC46     <---------MYB52(1) -----RVE1(1)          <----------DOF2             --------->ZAT2 ---->GLK1(1)   <---------ICU4                     <---------At4g35610         --------->HSFB2a(2)  < --->ARR11(3)  <---------YAB1                      --------->At4g35610--------->HSFB2a(2)           - ----ARR14(2)  ------>ZmHOX2a(1)          <---------GLK1(1)       <---------GLK1(1)                -- ----ARR11(3) --------->TOE2(3)           --------->GLK1(1)    <---------TOE1(3)                  --- --->ARR14(2)--------->YAB1          <---------LBD16           <---------TOE2(3)                  <--   attcaaacaactcaatcctcattccctttgtttcgcctctctggatttcgaagagctgagagattagggtttctcgattttcgagattagagtctaatcc  11569900                                                              <------NtERF2                                                             --------->LBD16                                                            <---------DEAR3(1)                                                            <---------ANAC46                                                           <------NtERF2                                                           --------->ATERF1(1)                                                           <---------LBD16                                                          <---------RAP2.3(1)                                                          <---------ATERF1(1)                                                          <---------ORA47(2)                                                          <---------ERF1                                                          ------>NtERF2                                                          --------->LBD16                                                         <---------RAP2.3(2)                                                         <---------RAP2.3(3)                                                         <---------DREB2C(2)                                                         --------->ATERF1(2)                                                         <---------RRTF1(3)                        <-                                                         <---------RRTF1(2)                        <-           <---------At4g35610                           <---------RAP2.6(2)                      <--           --------->At4g35610                          <---------LBD16                           ---  ----------->RAV1(1)                               -------->HAHB4                  --------->ANAC46  =============================RAV                 <---------ATHB12       --------->GLK1(1)       <-- --------->AtMYB61        <------ZmHOX2a(1)        --------->ICU4         <---------GLK1(1)       --- <---------ALFIN1    ------>ZmHOX2a(1) --------->ARR14(2)<---------DEAR3(1)         <---------DEAR3(1) ---------MYB55(2)  <---------LBD16    <---------ARR14(2)<---------ATERF1(2)       <---------LBD16--- -------->MYB46(3) ----------->RAV1(2) <---------GLK1(2)--------->ATERF1(1)      --------->MYB46(3)<- ---->NtERF2     --------->ARR11(3) <---------ANAC46--------->YAB1   <---------ANAC46             --- ------>ANAC46  --------->GLK1(1) --------->MYB52(1)<---------ICU4   <---------ANAC58            <--- -------ALFIN1  <---------GLK1(1)----------->HVH21<---------TOE2(3)  <---------ANAC58        <-------   ccaccaccagcatagctgatatcctggaggagagaatgacggattcgggtctaatgatgccggcggagattgctggaattctaaccacggcgattacgag  11570000 -----MYB83                                              <-----------RAV1(1) --------MYB46(3)                                    <----------DOF2 -------MYB46(3)                                   <----------DOF2                 <---------MYB52(1) ------>ALFIN1                                 ---------->ID1                     <-------GAMYB -------AtMYB61                            <----------DOF2                       --------->DEAR3(1) ------>MYB111(2)                       <---------ARR14(2)                       <---------MYB46(3) ------>MYB111(1)     <---------At4g35610 ------>ZmHOX2a(2)                    ------>NtERF2 -----MYB46(1)        --------->At4g35610<------ZmHOX2a(2)                   <---------LBD16<-------- ------>MYB55(2)    <---------WRKY38(1) <---------ARR11(3)                 --------->ARR14(2)     <-- -----P  <---------YAB1                 --------->ARR11(3)    <---------ANAC58 --------->LBD16   <--- --ANAC55(1)        <---------WRKY12    --------->ARR14(2)    <---------ANAC58--------->ANAC46   <---   ttggtgggatgatgttaatgagtcaactcagtggcaagatgggatctttttcgctctttgtggtgcttatgctcttgtttccgccgttgctcttgtatgg  11570100                                                                       <---------TOE2(3)                                                                       <---------TOE1(3)                                                                   <----------DOF2                                                                  <---------ANAC58                                                                  <---------ANAC46                                                                  <---------ANAC58            <------ -AtLEC2                              ----------->GT1         <---------ANAC58                <------ --------DOF2             --------->AHL20(2)                  <---------ANAC58                <------ ------ANAC58             --------->AHL20(1)          --------->HSFB2a(2)              <---------ARR11(3) ------ANAC58             <---------AHL20(2)          <---------HSFB2a(2)         <------ZmHOX2a(2) -   ctttcaaatttcttcgtaatacatgaaattttttgtttgggagtgaaattagttttctaaaaatgcttgcttttaggtttatagatcaatttcttagcgt  11570200      <-----------ARR10      <---------ARR11(3)      <---------ARR11(1)      --------->ARR11(3)     <---------CCA1(2)                                                          <----------DOF2 ---ANAC58                                <-----------RAV1(1)           <---------ICU4 ---ANAC58                              <----------DOF2                 --------->ATHB12 ---ANAC46    ------>ZmHOX2a(1)    ----------->HVH21                    -------->ATHB1         <----- ---------->HVH21           ---------->DOF2  <---------MYB46(3)        <---------ATHB12 <---------ICU4   gtttgacatatctttcctcttctgtttaacaaaagaggtgacctttgttgttgagacatcgttttctatctaaatcattgagctttgaaatacttactca  11570300  Previous    Next  AGI:  At4g21790.1    Description:  TOM1 (TOBAMOVIRUS MULTIPLICATION 1). similar to TOM3 (tobamovirus multiplication protein 3) [Arabidopsis thaliana] (TAIR:AT2G02180.1); similar to tobamovirus multiplication 1 [Nicotiana tabacum] (GB:BAE43836.1); contains InterPro domain Protein of unknown function DUF1084 (InterPro:IPR009457) Range:  from: 11569777    to: 11572561    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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