Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <<<<<<<<<SARD1                                                   --------->MYB46(3)                                                 ----------->RAV1(1)                                      --------->ATHB12 --------->YAB1                              <-                                      <---------ICU4  <<<<<<<<<ARR2                             -----                               --------->TOE1(3) ------>MYB83     <<<<<<<<<CBP60g               -----                               --------->TOE2(3) ------>MYB46(1) ------>MYB83                --------                          <----------DOF2     --------->ANAC58   ------>MYB46(1)    --------->ANAC58                         <---------ICU4       --------->ANAC58 <---------MYB59      --------->ANAC58       ----------->GT1 ------->TEIL   -------->ATHB1--------->WOX13(1)  <---------TOE1(2)    -------- ---->DOF2          <---------ATHB12 <---------ATHB12 <---------ATHB12 <-----------GT1       --------   agctagaaatggagaaaacccaatgaatctttaccctaaatcattgaaacccaacaatcaaaataccaaatttctacgttctactgaagcaaaaaccata  11470100                                                                                     --------->CCA1(2)                                                                                    --------->ARR14(2)                                                                                    <---------ARR11(3) --------AHL20(2)           --------->ANAC58                                        <---------ARR14(2) ---->AHL20(2)              --------->ANAC58                                        --------->ARR11(3) ---->ATHB51            --------->ANAC58                                     <------ZmHOX2a(1) ->YAB1                 --------->ANAC46                          --------->LBD16   --------->ARR11(1) ->TOE2(3)              --------->ANAC58  --------->GLK1(1)     <---------LBD16   ----------->ARR10 ->TOE1(3)  <---------------------WRI1   --------->ARR11(3)--------->REM1(1)<----------ID1   atttatgaagtgagagagaaactcacaaggaagcaagttgggagatttcgatggtagagctacttctccggattatagaggacaaagatatggagattgg  11470200                                             <---------ALFIN1                                          --------->ANAC46                                          --------->ANAC58                                          ================================================bZIP_DOF                                          --------->ANAC58                                          ====================bZIP_DOF                                          ----------->HVH21                                          --------->O2                                          --------->TGA1a                                          --------->bZIP60(2)                                        --------->ANAC46                                    XXXXXXXXXXXXXXXXXXXX>MIR398A                                   <---------At4g35610                                   --------->At4g35610                              <---------ANAC46            <---------YAB1                              <---------ANAC58            --------->ICU4  ---------->DOF2                              --------->ANAC55(2)       --------->YAB1  <---------YAB1<---------LBD16                              <---------ANAC55(2)      <---------YAB1<---------YAB1 <---------LBD16                              <---------ANAC58------>NtERF2  <---------YAB1    <----------DOF2                              <---------ANAC55(1)  <----------DOF2   --------->ICU4<-----------GT1                             <-----------------------TaNAC69(2)     <---------TOE2(3)--------->ANAC46   agagagagagagagaagagagattgggagattgcgtgtgctcacacgacacctctttatgatgatgaattgatgatgaaagcttttcacgcggtatgaac  11470300                                                                                     <---------AHL20(2)                     ------->GAMYB                                                  --------->AHL20(2)                    --------->MYB46(3)                                          --------->AHL20(2)                  --------->MYB52(1)                                            --------->AHL20(1)              --------->ANAC58                                                  <---------AHL20(2)              --------->ANAC58                           --------->YAB1        --------->AHL20(2)           <------NtERF2                                <---------ATHB12 --------->LBD16          --------->ANAC58                              --------->MYB46(3)     <---------AHL20(2)          --------->ANAC58                            --------->WOX13(1)--------->ANAC46            -      --------->ANAC46                              <---------ATHB12    --------->ANAC58    <--------      --------->ANAC58                        ----------->RAV1(1)       --------->ANAC58  --------->AHL20(2)      --------->ANAC58                       --------->MYB46(3)        <---------LBD16    <---------AHL20(2)     <---------LBD16<---------MYB52(2)   <------ZmHOX2a(2)       <---------GLK1(2)  <---------AHL20(2)   aaaacaacacggaggcaaggcaacgaactctgtctctgtctggatcaacaacaaatcaatcaccatcgattctcgcgcaaattaaattaaatataaattt  11470400                                                           <---------ANAC46                                     ----------->GT1       <---------MYB46(3)                                    ----------->GT1        --------->ALFIN1                                ============================bZIP_DOF                                ---------->DOF2           <---------DEAR3(1)                       <-                             ----------------->AGL1      <---------ANAC46                          <-                             ----------------->AG    <-----------HVH21                             --                             --------->TOE2(3)    <---------TGA1a<---------At4g35610             <---                             --------->TOE1(3) ----------->HVH21 --------->At4g35610         --------                             ----------------->AGL2 <-----------RAV1(1) --------->GLK1(2) --------->GLK1(2) ----->ZmHOX2a(2)           --------->ZAT6   --------->At4g35610<---------ANAC46         <---------GLK1(2) -AHL20(2)                <-----------GT1   --------->GLK1(2)--------->ALFIN1    <---------YAB1  ----   gatcgatttcgaaaaacgagaactcgattaaccctaaatcggaaataatctgacctgtgggctgtggagttgacaatcgggttatcagagagaatcgttc  11470500                                                                         --------->TOE1(2)                                                                         --------->TOE2(2)                                                                  <---------ARR14(2)                                                                 <---------CCA1(2)    <---------At5g28300                                                                --------->LBD16       <-----------GT1                                                         <----------DOF2--------->ANAC55(2)        <-                                                        <---------DAG2  <---------ANAC55(1)        --     <----------ID1                                  --------->ANAC46   <---------ANAC46           <- --------At4g35610                                   --------->ANAC58   <---------ANAC58          --- --------ZAT2                                        --------->ANAC58   <---------ANAC55(2)       <-- ------->ZAT2                                       --------->SPL7--------->ARR14(2) <-----------GT1 ------HSFB2a(2)              <----------DOF2 ------>ZmHOX2a(1)<---------ANAC46 <----------DOF2 ----- ->TOE1(2)                    <---------DAG2  <----------DOF2 <---------LBD16   <---------DAG2------- ----->HSFB2a(2)        --------->LBD16      *TSS  <---------ALFIN1     <---------ANAC58     ------>ZmHOX2a(1)   gagcagagagccaaaccaattcaatccagagactttttgtgtttagtcctttcgcacgccttttcccgtatattacgtgcgacttttttaccctccttca  11470600                                             --------->ARR11(3)                                             <---------ARR11(3)                                             <---------AHL20(1)                                             --------->AHL20(1)                                             <---------ICU4                                        <---------AHL20(2)                                        --------->AHL20(2)                                      <---------YAB1                                     --------->AHL20(1)                                    <---------AHL20(2)                                    --------->AHL20(2)                                   --------->AHL20(2)  <-----------GT1                  <---------AHL20(2)                    <------MYB46(1) --------AHL20(2)               <---------AHL20(1)                       <------MYB83 ------->AHL20(2)               --------->AHL20(1)                       <---------MYB46(3) --------ICU4                   <---------AHL20(2)                       ----------->GT1 ------>AHL20(2)                --------->AHL20(2)                     <---------WOX13(1)           < -------ATHB12                 --------->AHL20(2)                    --------->ATHB12               - ---->WOX13(1)      <-----------GT1<---------AHL20(1)               <---------YAB1                <-- ----->CBF ------------>CBF    <---------AHL20(2)                <----------DOF2                  ---   attaatacattactccaatttttatcttcacaaataaattattttaatattttcatacataaatgagcttttgattggttacaaattcagaacgatagaa  11470700        <---------AHL20(2)        --------->AHL20(1)        --------->AHL20(2)       --------->AHL20(2)       <---------AHL20(2)            ----------->RAV1(1)     --------->YAB1          <---------ARR11(3) ---------YAB1             <---------TOE1(3) ---------->GT1            <---------TOE2(3) <----------DOF2 -------ICU4        <---------AHL20(2) <---------ICU4             --------->YAB1      <-----------HVH21 ------>YAB1   <---------YAB1--------->ARR11(3)        <-----------GT1         <---------AHL20(2)   tcatgaaaaataatttgatgattttttttaagatttcaacaacattactttcgaattttactactcaatgagaacgagtgttttattttgtcacagaagt  11470800                                                                                             <-------                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                      <-------TEIL        -----------                  <---------At4g35610                     ----------->GT1               ---------->DOF2            <---------ARR14(2)                            --------->YAB1      --------->AtLEC2   <---            --------->ARR14(2)                   ----------->GT1 --------->DAG2      --------->LBD16    --------->GLK1(2)     <-----------GT1        <---------ZAT6 ---------->DOF2    <---------LBD16   aagaagaatttgagtatttgaactgattttacaacaattgaacaaagactagagtaacaatggtgaaaaagtttcatttcatgcatacgggaaagatatt  11470900                                                     <---------YAB1         <---------ZAT18                   <----------DOF2 <---------YAB1                           <---------ANAC58 --CCA1(1)                                <---------ANAC46 --RVE1(1)                         <---------ZAT14 --------->ATHB51 >AHL20(1)                         --------->ZAT18<---------YAB1                                    - -ARR11(3)           <----------DOF2      <---------ANAC58  <---------CCA1(2)  <----------DOF2     <- >ARR11(3)   <----------DOF2       --------->ZAT14--------->ICU4               <---------DAG2     --- >ARR10 <---------ZAT6         --------->DAG2    --------->TOE2(3)       <-----------GT1      <------ ------AHL20(2)<-----------GT1---------->DOF2  <---------TOE2(3) --------->At4g35610      <----------DOF2   aatatgagtagtgttctttacttcttttgatgaaaagtgtagtggctttaacattattgttcatatcatctaaattttcaactttattgtttcttttttc  11471000  Previous    Next  AGI:  At4g21560.1    Description:  vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein. Identical to Vacuolar protein sorting-associated protein 28 homolog 2 [Arabidopsis Thaliana] (GB:O65421); similar to vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein [Arabidopsis thaliana] (TAIR:AT4G05000.2); similar to vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein [Arabidopsis thaliana] (TAIR:AT4G05000.1); similar to unknown [Populus trichocarpa] (GB:ABK93756.1); contains InterPro domain Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143) Range:  from: 11468773    to: 11470545    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g21570.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11200.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61223.1); contains InterPro domain Protein of unknown function DUF300 (InterPro:IPR005178) Range:  from: 11470895    to: 11472993    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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