Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    -                                                                                               <-----                          <------ZmHOX2a(1)                                                    ------               <------MYB46(1)                                                             <---------               <------MYB83                                                             <-----------GT1           --------->ATHB12                                                            <-----------GT1          <---------YAB1 <----------ID1                                             <---------ARR14(2)        <---------ANAC55(2)                                                         --------->ARR14(2)        --------->ANAC55(2)    --------->At4g35610         --------->At4g35610      <---------GLK1(2) ------NtERF2  <---------MYB46(3)                          <---------At4g35610    --------->LBD16   < ---->NtERF2 <---------WOX13(1)--------->ZAT2          <---------ARR14(2)       ------>ZmHOX2a(2)  -- -------ATERF1(2)    ------>ZmHOX2a(1)                 ------->TEIL             ===================== ------>ATERF1(2)   --------->TOE2(3)                  --------->ARR14(2)     --------->ARR11(3)   --   ctggcaaaatatgtgattggttccttaaggacaagctgaagagagagcataacattgaatctgctgttcttcaatgggatgatcccgattttccttttta  11425600                                        --------->TOE2(3)                                       <---------ICU4                                       <--------HAHB4    ------>ZmHOX2a(1)                 --------->ICU4   --------->TOE2(3)                  <---------YAB1 -----------GT1              ---------->DOF2 -------->ARR11(3)       --------->ANAC58 ----AHL20(2)            --------->ANAC58 --->AHL20(2)       --------->ANAC58 <---------ARR11(3) -DOF2      <-----------GT1--------->ANAC46                  --------->YAB1 ---------ARR11(3)  --------->ANAC58 --------->ARR11(3)    ------->TEIL ------->RVE1(1)    --------->ANAC46--------->YAB1      <---------ANAC55(2) ==========HOX2a_HOX2a ----------->RAV1(1)      ----------->GT1       --------->ICU4            <---- ------->CCA1(1)  ---------->DOF2  <---------YAB1       --------->ANAC55(2)              ----------->HVH21   aatatccttattttttacattcaagccacacaaaagtatgatcattaacaaggtgaatatgtatcgtaagtcttaattagtctattgtggtctgactagg  11425700                                                                                      --------->AHL20(2)                                                                                   ----------->GT1                                                                                 --------->DAG2         <----------DOF2        <---------ANAC55(2)                            ---------->DOF2   ----        <---------DAG2          --------->ANAC55(2)                       ---------->DOF2   <--------     <-----------GT1        --------->AHL20(2)                         <---------ANAC55(2) --------->AHL20(2) --ZmHOX2a(1)         ------>ZmHOX2a(1)                 <---------YAB1<-------TEIL----------->GT1<---   aaaatataaaccttttgttaagtcctacaataaaacgtattcaacaattccaaatattatccatgactgaaatacataaagaaaaggtttaaattttatc  11425800       <------ZmHOX2a(1)                                                <---------HSFB2a(2)      ----------->GT1                                                   --------->HSFB2a(2)    <---------LBD16               --------->AHL20(2)              --------->DAG2 ----->HSFB2a(2)       --------->ZAT14     ---------->DOF2       ---------->DOF2      --------->AHL20(2) -AHL20(2) ---------->DOF2        --------->YAB1            --------->GLK1(2)  ---------->DOF2   ---- ------HSFB2a(2) ----------->RAV1(1)  ---------->DOF2---------->DOF2  <---------REM1(1)   --------->AHL20(2)   tagaaaccaggaaaaaagacaacagtaaacaaacaattaaaaaagaaaagactttgaaagaaaatccaaaagttgtagaagaaaagacttaaataaacac  11425900                                                                                     <-----------GT1                                                                                  --------->YAB1                                                                                  <---------ICU4                                                                         <---------ARR14(2)  --------                                                                    --------->MYB52(1)       <-------                                                                --------->ANAC46 --------->AHL20(2)         <---------ARR14(2)                                     --------->ANAC58 --------->ICU4         --------->ARR14(2)                              <---------MYB52(1)      <---------ATHB51    --------->GLK1(2)                                   <-------GAMYB    --------->ARR14(2) <--------    <---------ARR14(2)                          <-----------GT1 --------->ANAC58 <---------AHL20(2)    --------->ARR14(2)                      <----------DOF2  <---------ATHB12 <---------AHL20(2) ------>DOF2--------->ANAC46                <---------DAG2 --------->WOX13(1)--------->AHL20(2)   aaagagaatccaatacgctgtcgtttttgagcaaagtctctatcgacttttttccttccgttaatcaagccatcggatattaaataattacaaaattatt  11426000                                                                 =============HOX2a_HOX2a                                                                 ------>ZmHOX2a(2)                                                                ==============HOX2a_HOX2a                         --------->MYB46(3)                     <------ZmHOX2a(2)                        -------->P                          --------->SPL7                       --------->WOX13(1)                 <-----------HVH21                --------->ANAC58                         <---------TGA1a          *TSS  --------->ANAC58                         --------->O2                          ------          --------->ANAC58              --------->ZAT14  --------->ANAC58          --------->YAB1          --------->ANAC58     <---------AHL20(2)        <---------O2  ------>ZmHOX2a(1)     <-------         <---------LBD16===========================================MYC_MYB    --------->ZAT2 <------- ->AHL20(2)   --------->ANAC58<---------AHL20(2)         --------->TGA1a      <---------At4g35610 --AHL20(2)   --------->ANAC58--------->AHL20(2)         --------->ANAC58     --------->At4g35610   < -AHL20(2)--------->ANAC46 --------->WOX13(1)            ============================================   ttcagacaaaacacggacgcgaaatcaaccaattaaatccacttctctctcaccatctcacgtccgatctctcctctctgagctctcatcacgagtcaac  11426100                                                                                       <--------P                                                                                       --------->ALFIN1                                                                             <------NtERF2                                                                            ------>NtERF2<------MYB83                                                                           <---------ATERF1(2)                                                                          --------->SPL7--------->ALFIN1                                                                          --------->RAP2.6(3)-------- -->P  --------->LBD16                                    <------ZmHOX2a(1)--------->ATERF1(2) --WRKY38(1)                                         <---------ANAC46   ----------->HVH21<------MYB46(1) --WRKY12                                           <---------LBD16------>MYB83---------->DOF2 ----------DOF2                                   ----------->HVH21------>MYB46(1)    <-------GAMYB ===MYC_MYB  --------->ARR14(2)           --------->At4g35610   --------->MYB46(3)   <---------MYB46(3)   ccctttctccgtcgaaattcgcatgcttaaactctgagagaagaagatgactatgacggaggagaaaccaacttccgacggcaaaggaggttggggtttc  11426200                                         <----------DOF2                                       --------->At4g35610                                       ------>NtERF2                                      --------->DEAR3(1)                                   --------->ANAC46                                   --------->ANAC58                          ----------->HVH21                   ---------->DOF2 --------->ANAC58            <---------ANAC58     ---------->DOF2                                    <<<<<<<<<TBF1            --------->ANAC55(2) <---------GLK1(2)                    ----------->RAV1(2)            <---------ANAC55(2) <---------ARR14(2)     --------->REM1(1)   <---------At4g35610    --------->GLK1(2)    <-----------HVH21     --------->ALFIN1<---------MYB52(1)<<<<<<<<<TBF1 ->GLK1(1)  <---------ANAC58    --------->ARR14(2) <---------At4g35610 --------->HSFB2a(2)   ttcaagattccatttcgtaactcaagcggtcacagaaacgccgcttcaagtgctgctacttctccgtttccatctggagcttcttcttcttctacttctt  11426300                                                                                         ----------->GT1                                                                                       ==============                                                                                       ------>ZmHOX2a(2)                                                                         =====================HOX2a_HOX2a                                                           <------MYB46(1)     --------->ALFIN1                                                           ----------->GT1    --------->At5g28300                                                           <------MYB83  <---------REM1(2)                          --------->YAB1               <---------ZAT2    ------>ZmHOX2a(1)              --------->YAB1                           --------->At4g35610--------->MYB52(1)           ------->GAMYB  <---------ICU4               --------->ZAT2    ----------->HVH21           --------->YAB1<---------YAB1           <---------ICU4    ------->GAMYB    --------->ARR14(2)          --------->MYB46(3)    <---------ICU4    --------->YAB1 --------->MYB52(1)  <---------ARR14(2)     --------->ANAC46  --------->YAB1      --------->At4g35610   <-----------GT1  <---------WOX13(1)   ctcatctacataaccatcatcaacatcatcatcaacatcaccatcagcaccatcatcagcttggttataacggtcctcacggtgatggatcgggtcaaaa  11426400                            ----------->RAV1(2)                            <---------At4g35610            ------>ZmHOX2a(1) <---------MYB46(3)        --------->MYB52(1)    ------>ZmHOX2a(1)     ------->GAMYB------>ZmHOX2a(1)                ------>ZmHOX2a(1)        ------>ZmHOX2a(2)     <-- --------->MYB46(3)      <-------TEIL     <----------DOF2                 <---------ARR11(3)      <-- ==================HOX2a_HOX2a<-----------RAV1(1)  ================================HOX2a_HOX2a <-----   tcaacatccgactccttctccttcagtttcatctgttgctaagtcttttcttcctactaaacgaagattgaagcttgatccttctgagaaactctatttt  11426500  Previous    Next  AGI:  At4g21445.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO42770.1) Range:  from: 11424721    to: 11425778    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g21450.1    Description:  vesicle-associated membrane family protein / VAMP family protein. similar to vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] (TAIR:AT4G05060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40467.1); contains InterPro domain PapD-like (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) Range:  from: 11426010    to: 11428356    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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