Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      ----------->GT1                  --------->ALFIN1                  <---------ANAC46                ------->GAMYB             --------->MYB52(1)            <---------WRKY38(1)         --------->At4g35610  --------->MYB46(3)--------->ALFIN1  <---------MYB52(2)<---------ANAC46 -MYB46(1)  <---------WRKY45 -MYB83 --------->MYB59                                  --------->AHL20(2) -->ALFIN1<-----------HVH21                             --------->AHL20(2) -->MYB111(1)<---------DOF5.7(2)              --------->ANAC46                                <------ZmHOX2a(1) ---AtMYB61--------->WRKY18(1)                --------->ANAC58                              --------- ---MYB46(3)<---------WRKY12                  --------->ANAC58                             --------->HSFB2a(2) -P  --------->GLK1(2)          ----------->GT1         <---------AHL20(2)        <----------DOF2   tgcaacgaatcaggtcaacggtgtgtgaaataagaagttataagttacaagaaaacatttaaaataagtttatatttctcacttcttttctctccaggac  11405400                                                                   <-----------GT1                                                                  --------->AHL20(2)                                                            ----------->GT1                                                     --------------->AGL15                                                     <---------------AGL15                             ------>MYB46(1)        <---------------AGL15                             -------->P             ----------------->AGL1                             ------>MYB83           --------------->AGL15                           ------->GAMYB           <-----------------AGL3                          --------->MYB46(3)       <-----------------AG                      --------->DOF5.7(2)          ----------------->AGL3                      <-----                     --------->TOE1(3)             <-----------------AGL2            ------>ZmHOX2a(1)                     <----------DOF2               ----------------->AGL1       <---------GLK1(1) --------->YAB1      --------->TOE2(3)             <-----------------AGL1       --------->GLK1(1) >LBD16  ---------->DOF2<-----------GT1            ----------------->AGL2     <------ZmHOX2a(1)<-----   caataagaactcaaagtctgaaactttaaccaactagaaactaaaactaatcttccattaatgggaaataaactacttaaggacatcctagagactcctt  11405500                                                                            ------>ZmHOX2a(2)                                                                          <---------ARR11(3)                                                                          <---------ARR14(2)                                                                          <---------AGP1                                                                          --------->ARR14(2)                                                                          --------->ARR11(3)                                                                     <---------ANAC58                                                             ------>ZmHOX2a(2)                                                           --------->ARR14(3)                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                 --------->ARR14(2)  <---------ANAC46                                                 <---------ARR14(2)  <---------ANAC58                                              <---------ANAC46<----------DOF2                 --------->At4g35610         <---------LBD16<------ZmHOX2a(2)                 <---------At4g35610         <-------TEIL  <---------ARR14(3)     <-----------GT1                        --------->ALFIN1<---------RVE1(1)   <-----------GT1 <----------DOF2        <---------ANAC58 <---------ARR11(3)                       < -----DOF2      ------>ZmHOX2a(1)         <---------ANAC58 --------->ARR11(3)                       - ----DAG2     ----------->RAV1(2)   --------->ICU4         <---------AGP1<---------CCA1(2)         <-   ttttttttcacatccctcctgctgtatttgaatttatacttatgaggtgcggattgtggaagatctttatgtcttggatcttactcgctgaatgagacct  11405600                                                     -------->P  <---------HSFB2a(2)          <----------DOF2                          <---------MYB111(2) ---------ARR14(2)                                --------->STY1(2) -------->ARR14(2)                                <---------STY1(2)     --------->TOE1(2)       ----- --------CCA1(2)        ---------->DOF2    <----------DOF2     <---------ATHB12                 -----   caaatctgaatgctttgttaatgcatcaaagaaatgcaattggaactttactagctacctcttcaatcgagaaacctgcaatttgcaaaccagaaaccaa  11405700                                                                                    <---------ANAC46                                                                                    <---------ANAC58                                                                                <----------DOF2                  <---------At4g35610                                           ------>ZmHOX2a(1)  --           <---------AHL20(2)           --------------->AtSPL8     <----------DOF2  <---------AtLEC2    ----------->GT1         --------->YAB1       --------->YAB1    <---------DAG2   <---------ANAC58 ---->ANAC58      --------->At4g35610  <---------AtLEC2      <-------TEIL------------>CBF       ----- ---->ANAC58  <-----------GT1        ------>ZmHOX2a(1)----------->GT1   <-----------GT1      --------   gaaaaaatgttatttttttcagcacagaaaacataactcctgcatgtactataatgaagaaaattcatactttttcacaatcctttgcttggaaataaca  11405800                                                                 <---------ANAC58                                                                 <---------ANAC58                                                                <-------TEIL                                                               --------->ALFIN1                                                          --------->LBD16         <---------ANAC46                       *TSS                           <---------ARR14(2)     <---------At4g35610                  --------->REM1(2)               --------->LBD16--------->ANAC55(2)                 ----------->HVH21       <---------ANAC58<---------HSFB2a(2) --------->At4g35610                --------->LBD16          <---------ANAC58--------->HSFB2a(2) <---------ZAT2               --------->LBD16       <----------DOF2<---------MYB46(3)       --------->ZAT2       --- -------->DOF2 --------->ANAC55(2)------>NtERF2  <---------ANAC46<---------ANAC55(2)            <---- -->GAMYB     <---------LBD16    --------->ANAC46--------->DEAR3(1) --------->MYB52(1)    --------->At4g35610 ->MYB52(1)<---------ARR14(2)    --------->DEAR3(1)--------->ALFIN1----------->HVH21      <---------At4g35610   gcaaagtaatgaagttcccgtgatgagtcaattcgacgcctttgcttatcgccgtggttccagaggtgcgtaacagagcagctggtttggatagctccat  11405900                                                                                                    <                                                                                                  <--                                                                                                 <---                                                                                                <----                                                                                                <----                                                                                                -----                                      <---------LBD16                                          <-----                                    <---------SPL7                                             <-----                                  <---------------AtSPL3                                       <-----                                  <---------------AtSPL8           <------ZmHOX2a(2)           <-----                             <---------MYB52(1)             --------->At4g35610              ------->GAMYB                            --------->LBD16              <---------ATHB12                   ---------                           <---------LBD16             --------->WOX13(1)                   ---------           --------->ATHB12--------->HSFB2a(2)      --------->CCA1(2)                      ------>MYB46(1)           --------->YAB1  <---------HSFB2a(2)      <------ZmHOX2a(2)                      ------>MYB83    --------->LBD16        <---------ANAC46        --------->AGP1 --------->ARR11(3)      --------->MYB52(1)    ----------->HVH21     <---------LBD16          --------->ARR11(3)                    --------->TOE2(2)   --------->LBD16     --------->At4g35610         <---------ARR11(3)                    --------->TOE1(2)  <---------LBD16      <---------GLK1(1)           --------->ARR14(2)                   --------->MYB46(3) ------>WOX13(1)       --------->GLK1(1)           <---------ARR14(2)          <---------MYB52(1)<--- -----ATHB12          <---------ARR11(3)       ---------->DOF2    <---------ARR11(3)    --------->DEAR3(2)   caatcccggacattgataggccaagagctccgggagtttgtacggattataaagatccaatcagcgaagatcaatacgaccgtcgtttgaaccaacgacg  11406000      --------->ZAT2      <---------ZAT2      --------->At4g35610          <----------DOF2                                    ------>ZmHOX2a(2)      <---------At4g35610          <---------DAG2                                    <------ZmHOX2a(2) ------NtERF2                   <---------ALFIN1                                    <---------ARR14(2) -------ANAC46               <---------TCP20                                   --------->MYB52(1) ------LBD16                 --------->ARR14(2)                               <-----------GT1 -----RAP2.3(1)              <---------ARR14(2)                            --------->YAB1 -----ATERF1(1)            <---------HSFB2a(1)                            <---------YAB1 ->NtERF2                  --------->HSFB2a(1)                            <---------AHL20(2) ----RAP2.3(3)             <---------DEAR3(2)                            <---------AHL20(2) ----RRTF1(3)              <---------HSFC1(2)                         --------->YAB1--------->ARR14(2) ----DEAR3(1)              <---------MYB46(3)                         --------->AHL20(2)  ---------->DOF2 ----RAP2.3(2)             --------->HSFC1(2)           ----------->HVH21--------->AHL20(2) >MYB46(3)                <---------DEAR3(1)           --------->TOE2(1) --------->AHL20(1) -->HVH21               <------ZmHOX2a(1)              --------->TOE1(1) <---------AHL20(1) --------- ---NtERF2              ------------>AtMYB77   --------->YAB1  <-----------HVH21<---------LBD16   gcggattaagctgagggatagagtgaggacggttccactttatgaacaaaaataatctcggaccgggtcgaataatataataaccggatcggtaatgctg  11406100                                                                          <---------TOE2(3)                                                                    <---------AHL20(2)                                   <---------ANAC58                 --------->AHL20(2)                     --------->MYB52(1)                            --------->AHL20(2)                     <---------DOF5.7(2)                         <----------DOF2                    <---------WRKY12                             ------>ZmHOX2a(1)            >>>>>>>>>WRKY18    <---------MYB52(1)              ------>ZmHOX2a(2)           ----------->HVH21 <------MYB83                     <------ZmHOX2a(2)   <---------ANAC58 <---------WRKY38(1)                      <---------ARR14(2)   --------->ANAC55(2)       <------MYB46(1)                 --------->ARR11(3)   <---------ANAC46 <---------WRKY45                         --------->ARR14(2)   <---------ANAC55(2)      --------->MYB59                  <---------ARR11(3)   <---------ANAC55(1)    <---------MYB52(1)                <------ZmHOX2a(1) <-------TEIL     ------   <---------ANAC58--------->WRKY18(1)                    <---------TOE2(3)  --------->ARR11(3)------ >ICU4------->TEIL<-----------HVH21<---------ANAC58   <----------DOF2     --------->MYB59    <-------   aacttacgtatttttgacagggtcaacggttcggtttgcttatctatttgtctctggttttaggatccttttaatttaggttcttgagttgtaaaccgaa  11406200                <<<<<<<<<<MYB80               <------MYB46(1)               <------MYB83              <---------AtMYB61              --------->MYB59                             --------->ANAC46     <---------GLK1(1)                                 ------>ZmHOX2a(2)     --------->GLK1(1)------->TEIL  <------MYB46(1)   <------ZmHOX2a(2)                            -- >MYB46(1)  <---------MYB52(1)      <------MYB83     --------->ARR14(2)  --------->DAG2            <- >MYB83   --------->LBD16          <---------AtMYB61 <---------ARR14(2) ---------->DOF2   ----------- --MYB59<---------LBD16            --------->MYB59   ------->TEIL ----------->GT1      <---------ARR11(3)   ctctgtgatttccggtttggtttgaacctgtggaagtttggtcgaagagggaatggatccacgatgtatgggaaaaaagtatcagacaatgtcttagtgg  11406300  Previous    Next  AGI:  At4g21420.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 6.9e-06 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family) Range:  from: 11405823    to: 11407523    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version