Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->ANAC58                                --------->ANAC46                          --------->ANAC58                                  <---------ANAC58             <---------GLK1(1)  --------->ANAC58                            <---------ANAC58         --------->LBD16  --------->ANAC58      ---------->DOF2             ----------->GT1        --------->LBD16----------->TGA1--------->TOE2(2)             <---------ARR11(3)       <---------LBD16 ----------->HVH21     --------->AtLEC2 ---------->DOF2            <----------DOF2      <---------LBD16<---------ICU4    --------->TOE1(2)   --------->AtLEC2 <---------ANAC46       --   gacattttccctgggaaatgtgaacatgacgcaaacgcaaaactacgatgcaaagaagacgatgcaaagaagacattagcgtaaaatacagctttaaaat  11383200                                               <---------ICU4                                               --------->YAB1                                            --------->YAB1                                           --------->AHL20(2)                                           <---------AHL20(2)                                         <----------DOF2                               --------->AHL20(2)                                                <---           --------->AHL20(2)  <---------AHL20(1)                                               -----       <---------YAB1          --------->AHL20(1)                     <---------GLK1(2)         ----- <---------AHL20(1)            <---------AHL20(2)           <---------TOE1(2)         ----------->GT1 --------->AHL20(1)           --------->AHL20(2)  <-----------GT1     --------->ARR11(3)        ----- --------->ARR11(3)        --------->WOX13(1) --------->ICU4<---------TOE2(2)         <---------MYB46(3) ----->TEIL<---------AHL20(2) <---------AHL20(2) <---------YAB1       <---------ARR11(3)        -----   gaatattttgtgataaatttgtttttcttcaattaaatttgtgctttaattatcactgttcataggtatatagattttggttttggagttgttaaaccaa  11383300       <---------YAB1      ------------>CBF     <-----------GT1 ------ATHB12                                         --------->DAG2           ------------>CBF ->MYB46(1)                  --------->YAB1         ---------->DOF2      --------->ICU4       <------ ---->ANAC58            <----------DOF2           --------->YAB1         --------->GLK1(2)   <------- ->MYB83                <---------DAG2 ------------>CBF          <---------ARR14(2)       <----------DOF2 ---->ANAC58           --------->TOE2(3)  <------------CBF       --------->ARR14(2) <---------ARR11(3)   gcattttttacaatagcaaattccacctttatcaaaagtttgacaattgcattcaaaagggcgagagggtctgaaattcttagcaatgtcttctttcttt  11383400                                                                                    <---------WOX13(1)              <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    <------------CBF        <----------DOF2                                                          <---------AHL20(2)      ---------->ID1                                       <---------YAB1        <---------YAB1  <---     <-----------GT1                   ---------->DOF2   <---------ICU4          --------->AHL20(2) <------------------------ANAC81 ----------->GT1        --------->ICU4        <----------DOF2 ------- ----DOF2   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------ICU4          <---------------AGL15 < -----------------ANAC81      <---------YAB1         <---------YAB1           --------------->AGL15--   ttttttttttctttttttttttttttttttttatgatgtaaaaaagaaactgaacatcattatgtctgaaaacactgtttcttttaattgaaaaactcat  11383500                                                                            --------->HSFB2a(1)                                                                            <---------KAN4(1)                                                                            --------->GLK1(1)                                                                            --------->KAN4(1)                                                                            <---------GLK1(1)                                                                            <---------HSFB2a(1)                                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              --------->ANAC55(1)                                                              --------->ANAC58                                                              --------->ANAC58       xxxxxxxxxxxxxxxx                                                              --------->ANAC46       xxxxxxxxxxxxxxxx                                                              <---------ANAC55(2)   --------->At5g28300                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           <---------ARR14(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        --------->LBD16    ---------->TaMYB80                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       --------->HSFB2a(2) --------->ARR11(3)                                           xxxxxxxxxxxxxxxx>smallRNA(i)    ----------->ARR10                                         <---------ANAC46--------->LBD16   --------->ARR14(2)                                  <-----------TBP     <---------LBD16      <---------KAN4(2)       <-------GAMYB ------>ZmHOX2a(1)   <---------RAP2.6(2)  --------->ANAC55(2)  ----------->GT1      <---------MYB46(3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------ARR11(3)  --------->WRKY38(1)<----------DOF2     <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------ARR14(2)      xx ------ICU4         --------->TOE2(3)   <---------At4g35610--------->ARR14(2)--------->KAN4(2)<------ -->YAB1   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      ---------->ARF1    <---------ANAC46        <------ ---------ICU4     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------------AGL1<----------TaMYB80<xxxxxx ------->ICU4  <-------TEIL <------------CBF   --------->REM1(1)<xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxx   aatgttgactgttgagtttcatcctttgttaattgtatatgtagcggctacatgtctcccgaatacgcaatggaggggatattctcggtaaaatcggatg  11383600                                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       ------>NtERF2        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       ------>NtERF2       <---------ANAC46                                          --------->LBD16       <---------LBD16                                     <---------ALFIN1        xxxxxxxxxxxxxxxx>smallRNA(i)      <---------LBD16                                     <xxxxxxxxxxxxxxxxsmallRNA(i)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <xxxxxxxxxxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(i)                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          ----    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           ----   <---------ZAT2                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          -----   --------->ZAT2                                  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <----   <---------At4g35610                             <------ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->At4g35610                            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->ANAC55(2)  xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ANAC58 xxxxx>smallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->YAB1<---------ANAC55(2) xxxx>smallRNA(fl3)                  ---------->DOF2<---------ARR14(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxx>smallRNA(i)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ANAC58     <---------ANAC46 ---TOE1(2)                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---TOE2(2) xxxxxxxxxxxxxxxx>smallRNA(i)   <------ZmHOX2a(1)   <---------LBD16   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxsmallRNA(i2)      --------->At4g35610--------->ARR14(2)--------->ANAC58     --------->ANAC58 xxxxxxxxxxxxxsmallRNA(fl3)  <-----------HVH21    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxx   ttttcagcttcggggttttggttcttgagattgtcagtggaaagaggaacagaggattccacaactccggccaagacaataatcttctcggctacgtaag  11383700                                                                       --------->ALFIN1                                                                      --------->TOE1(2)                                                                     <---------ANAC46                                                                     --------->TGA1a                                                                     =========================bZIP_DOF                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                     =========================bZIP_DOF                                                                     <---------TGA1a                                                                     <---------O2                                                               <-----------GT1                                                          <---------YAB1                                                <---------AHL20(2)   --------->O2                                               <---------AHL20(1) =============MYC_MYB       --------       <----------DOF2                         <---------AHL20(2) ------->GAMYB             ---------       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      xxxxxxxxxxxxxxxxx ----->TOE2(3)                <---------TOE1(2)--------->AHL20(2)--------->MYB46(3)---------->DOF2 <x ----->TOE1(3)              xxxxxxxxxxxxxxxx>smallRNA(i) <----------DOF2          xxxxxxxxxxxxxxxxxxx ---->At4g35610  <---------AHL20(2) --------->YAB1       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxx -----At4g35610 <---------AHL20(2)<---------WOX13(1)  <-----------GT1<---------bZIP60(2) <xxxxxxxxxxx xxxxxxxxxsmallRNA(fl3) ---------->ID1   --------->ZAT6  ======================bZIP_DOF<xxxxxxxxxxxxx   cttaaaccgcttaagttttttattttgtctcgttcgattgataacacaattttttttatctttattaacagacgtgggagaattggaaagaaggaaaagg  11383800                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <---------ICU4                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <---------YAB1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         x          <---------DEAR3(2)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------WOX13(1)      ================================HOX2a_HOX2a       <---------ALFIN1          <---------GLK1(2)<x      ------>ZmHOX2a(2)            --------->YAB1       ------->GAMYB            xxxxxxxxxxxxxxxxxxxx     =================================HOX2a_HOX2a      --------->MYB46(3)        <xxxxxxxxxxxxxxxxxxx     <------ZmHOX2a(2)             <---------ICU4      <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       xxxxxx    <---------ARR11(3)         ------>ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------MYB46(1)x    --------->ARR11(3)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ->DAG2 <---------------------WRI1<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ->DOF2 <xxxxxxxxxxxxxxxxsmallRNA(i) <---------YAB1   ------>MYB46(1)     <-------TEIL        xxxxxxx xxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ------>MYB83      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->TOE2(3) -------->P        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) x>smallRNA(i2)  <---------ATHB51<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxx>smallRNA(si3) <---------GLK1(2)<---------YAB1  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxx xxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <------MYB83 xxx xxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <----------DOF2   gctagagatcgtcgattcgataattgtagattcctcatcatcaatgtcattgttccaaccacatgaagtcttaagatgcatacagattggtcttttatgt  11383900                 <xxxxxxxxxxxxxxxxsmallRNA(i)              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxsmallRNA(i)            --------->At4g35610            <---------At4g35610            <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxsmallRNA(i)         <-------TEIL         <---------ZAT14         --------->ZAT14        <xxxxxxxxxxxxxxxxsmallRNA(i)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ------->MYC2       <-------MYC3       ------->MYC3       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <-------MYC2       ------->MYC4       ------->PIF5       <-------PIF5  xxxxxxxxxxxxxxxx>smallRNA(i)      <---------ANAC58         <---------ANAC58      <---------ANAC58         --------->ETT(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                - xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------WOX13(1)                                     ------ xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------MYB46(3)                                       ------ xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------DEAR3(2)                                          ------ >smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          --------- xsmallRNA(si3)<------ZmHOX2a(1)  <---------DEAR3(1)                                        --------- xxxxxxxxxxxxxx>smallRNA(fl3)  <---------ANAC58                                           ----------- xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------At1g77200                 --------->At4g35610 <---------At4g35610 xxxxxxxxxxxxx>smallRNA(i2)--------->ARR11(3)               ----------->HVH21      --------->ARR11(3) xxxxxxxxxxxxx>smallRNA(fl3)   <---------ANAC46             ----------->TGA1       <---------ARR11(3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)<------NtERF2  <---------MYB52(1)    <---------At4g35610 --------->At4g35610   gttcaagaacgtgcagaggacagaccaaagatgtcgtcggtgattgtcccgttttgtactcgatgacgaatcagcagtatcaagagaacttcttctgacg  11384000                                                                                        ------->MYC2                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <-------MYC2                                                                                        <-------PIF5                                                                                        ------->PIF5                                                                                        <-------MYC3                                                                                        ------->MYC3                                                                                        <-------MYC4                                                                                       <xxxxxxxxxxxxx                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                                      ------->TEIL                                                                                    <---------ZAT14                                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  <---------ARR11(3)--------->ZAT14                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                               ------>NtERF2       <xxxxxxxxxxxxxxxxx                                                              --------->ANAC58     xxxxxxxxxxxxxxxxxx                                                              --------->ANAC46    <xxxxxxxxxxxxxxxxxx                                                              <---------ETT(2)    <xxxxxxxxxxxxxxxxxx                                                              --------->ANAC58   --------->At4g35610                                                           ------->GAMYB  xxxxxxxxxxxxxxxx>smallRNA(i)                                                           --------->DEAR3(1)    <---------At4g35610       ------>NtERF2                                       --------->DREB2C(2)   ------>ZmHOX2a(1)   <---------LBD16                                         --------->At1g77200   <xxxxxxxxxxxxxxxxxxx -------->MYB46(3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->ANAC58                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->ANAC46                                               --------->MYB46(3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->ANAC58                         ---------->ID1        --------->DEAR3(2)  xxxxxxxxxxxxxxxx>smallRNA(i) -->TGA1                        <----------DOF2          --------->MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(i) -->HVH21  <---------MYB52(1)   <---------DAG2          --------->AtMYB61 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >RAV1(2)<---------ANAC46      <---------DAG2          --------->MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(i)   caataaccgggccgtttagggctgaagtattcccctttttcgctaccgagcattaaaaccaccgacgacatctttggtctgtcctctgcacgttcttgaa  11384100  Previous    Next  AGI:  At4g21366.1    Description:  S-locus protein kinase-related. similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G21370.1); similar to S receptor kinase SRK37 [Arabidopsis lyrata] (GB:ABF71379.1); similar to S receptor kinase SRK04 [Arabidopsis halleri] (GB:ABF71368.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 11383552    to: 11383966    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g21370.1    Description:  S-locus protein kinase, putative. similar to ARK1 (A. THALIANA RECEPTOR KINASE I), kinase [Arabidopsis thaliana] (TAIR:AT1G65790.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to ARK2 (Arabidopsis Receptor Kinase 2), kinase [Arabidopsis thaliana] (TAIR:AT1G65800.1); similar to S receptor kinase SRK37 [Arabidopsis lyrata] (GB:ABF71379.1); similar to SRKa [Arabidopsis lyrata] (GB:BAB40986.1); similar to S receptor kinase SRK04 [Arabidopsis halleri] (GB:ABF71368.1); contains InterPro domain Apple-like (InterPro:IPR003609); contains InterPro domain Serine/threonine protein kinase; (I Range:  from: 11383895    to: 11387147    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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