Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->CCA1(2)                                                                         <------ZmHOX2a(2)                                                                         --------->ARR14(1)                                                                         <-----------------AGL1                                                                        <---------ARR11(3)                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                                                                        <---------AGP1                                                                       <---------GLK1(1)                                                                      ----------->ARR10                                                                 <---------ANAC46                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      ------->GAMYB              <---------ANAC58                                     --------->MYB46(3)          <---------ANAC58         --------->HSFC1(2)                                    -------->P              --------->MYB52(2)  --------->MYB59  ---- >ZmHOX2a(1)                       <-----------GT1  ---------->DOF2 <---------ZAT14       <---------HSFC1(2) -->TOE2(3)        <---------ICU4  --------->WOX13(1)    --------->TOE2(3)------>ZmHOX2a(2)    <-----   aagaattcatcagtgttttgatcaatactcaaattatcaaccatcttgaatgagtaaagccttagttgagtgtagatccgattaggcaacgatgtttcca  11367800                                                                                            ---------                                   --------->At5g28300                                      <--------                                <---------At4g35610                                  --------->YAB1                               ----------->RAV1(1)                         --------->bZIP60(1)                             --------->At4g35610                           <---------ANAC46 <--------                             <---------At4g35610                           <---------bZIP60(1)                         <---------ARR14(2)                              --------->ZAT14    <--------                         --------->ARR14(2)                  --------->ARR14(2)     <---------YAB1  < ----->AtLEC2        ---------->DOF2        --------->ALFIN1 <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxx ----AtLEC2  <-----------RAV1(1)--------->At4g35610 <----------DOF2      <---------ZAT14    ---------   tgaacaacttgttcaatgttgcccaaagttctgcagcagtaacacagtgttgaactttaagaagaactgtatcagtgatgtgatttatgatgaagttctt  11367900      ----------->HVH21      ------>ZmHOX2a(2)     ------>ZmHOX2a(2)      <------ZmHOX2a(2)    <---------At4g35610    --------->ARR11(3)    --------->At4g35610    --------->ARR14(2)   <---------ARR11(3)      <---------AGP1   <---------AGP1          <---------ARR14(2) >ARR14(2)                <---------ARR14(1) ---ARR10                 <---------CCA1(2)                                     <---------GLK1(2) -ARR11(3)        --------->YAB1 --------->ARR14(2)                           <---------YAB1 -ARR14(2) --------->At4g35610<---------HSFB2a(2)                          --------->GLK1(2) ----------DOF2   --------->TOE2(3)                                       <---------ARR14(2) xx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)         ------->TEIL        <---------GLK1(2) >ARR11(3) <---------At4g35610--------->HSFB2a(2)<----------DOF2          --------->ARR14(2)     <---   cgcttgatctgactgctcaaacttaatcggatctggaacttcttcagttttctttgaatctgtttcatcgtcttcagattctgattctttcttctcgctc  11368000                                                                     <---------ZAT2                                                                     <---------At4g35610                                                                     --------->At4g35610                                                                     --------->ZAT2                                                                <---------ZAT2         --------->GLK1(2)  --------->GLK1(1)                   --------->At4g35610        <---------GLK1(2)   <---------GLK1(1)                   <---------At4g35610      --------->ANAC58 ----------->GT1       <----------DOF2    --------->ZAT2      --------->ANAC58--------->DAG2 --------->DAG2            ------>MYB46(1)  <---------CCA1(2) -------DOF2         ---------->DOF2---------->DOF2            ------>MYB83<---------GLK1(2)   tttaccacaagaatcgtcttggttaaagtgaaatccgataaagcaggctttaatccaagaacaccaagctgagcttcgattcttatcttccacagagaga  11368100                                                                                             --------                                                                                     ------>MYB46(1)                                                                                     ------>MYB83                                                                                     --------->GLK1(2)                                                                                    --------->WOX13(1)                                                                                  ------------>CBF                                                                           XXXXXXXXXXXXXXXXXXXXX>MIR845B                                                                          XXXXXXXXXXXXXXXXXXXX>MIR845A                                        --------->bZIP60(1)              xxxxxxxxxxxxxxx>smallRNA(si3)                 --------->ARR11(3)  --------->WRKY12                    xxxxxxxxxxxxxxx>smallRNA(le3)                 <---------ARR11(3)  ----------->HVH21                  xxxxxxxxxxxxxxxx>smallRNA(fl3)             ---------->DOF2    --------------------->WRI1              xxxxxxxxxxxxxxxx>smallRNA(se3)      --------->ANAC58      <---------ALFIN1                           xxxxxxxxxxxxxxxx>smallRNA(i)      ------>ZmHOX2a(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->ANAC58   ------>ZmHOX2a(2)                *TSS------------>CBF  <xxxxxxxxxxxxxxxxxxxx     <------ZmHOX2a(2) <---------ARR11(3)     --------->DEAR3(1)     ----------->RAV1(2)----------->GT1   agtcgcgatcgccattaaaggtcttgatctccaccttcgttgacatcgccatcgatggagttttgccaataacctggctctgataccaatctgttacaac  11368200                                                                                                   --                                                                                                -----                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                         --------->ZAT14                                                                                         <---------ZAT14                <---------GLK1(2)                                      ==============================      <---------YAB1                       --------------->AtSPL8      ---------->DOF2   <---------ZAT18    <----------DOF2              --------->WOX13(1)              --------->YAB1        <xxxxxxxxxxxxx ->REM1(1)  <-----------GT1    ------------>CBF         --------->ARR11(3)   ---------->DOF2  ------- xxxsmallRNA(se3)--------->GLK1(2) <---------ATHB12     <---------ARR11(3)   ========================   tccgaactttgattaaacgattctctcacaactctcaatcactcgtttgtactctcaagaacttgaatcacaacaaagagaaagaaaacagagcacacgc  11368300 ------->ATHB12 ---->ANAC55(2) -->O2 -->TGA1a ---TGA1a                         --------->O2             --------->RAP2.6(3) ---O2<-----------GT1  ------>ZmHOX2a(2)              <---------ATHB12 -->ANAC58            <------ZmHOX2a(2)            <------NtERF2 -->ANAC58           <---------ARR14(2)         ------>NtERF2 ===bZIP_DOF         --------->ARR14(2)     --------->ALFIN1 xxxxxxxxxxsmallRNA(le3)          <---------ANAC55(2)<-----------------AGL1 -->ANAC46      --------->MYB52(1)<---------O2 <---------PCF2 ===bZIP_DOF   <---------WRKY12   --------->TGA1a<------NtERF2                    --------->CCA1(2)   gtgatttgttacccagttcaacggatcgatgtgatcacgtctacgtttggggccgaatcaattcggcaattcactaacaacaagagatgaacaagtctca  11368400                             <----------DOF2                           <---------At4g35610          <<<<<<<<<<<<<<<<<LFY         ----------->RAV1(1)      --------->ZAT18      <---------ZAT2                                               >>>>>>>>>TBF1    <---------At4g35610    --------->At4g35610   <------------MYB.PH3(2)             >>>>>>>>>TBF1    <---------ZAT2         --------->ZAT2 ------->GAMYB             --------->ICU4>>>>>>>>>TBF1    --------->At4g35610 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <----------DOF2---------->DOF2         <-    --------->ZAT2   <-----------ARR10--------->REM1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)>>>>>>>>>TBF1   agctcgagctcacaacaatggagtctctcagctttctgttacaacagaataacaaactctcactttcgaaatgaatacaaagaagaagaagaagaagaag  11368500                                                          <---------At4g35610                                                          <---------ZAT2               xxxxxxxxxxxxxx                                                          --------->At4g35610        <xxxxxxxxxxxxxxx           <---------WRKY38(1)       ---------->DOF2      --------->ZAT2            <---------HSFB2a(2)           <---------WRKY12      <---------HSFB2a(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->AHL20(2)              --------->HSFB2a(2) <-----------GT1<---------YAB1  --------->HSFB2a(2) ---------DOF2        <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->YAB1   actttatatagagtcaacttaatgaaaccctctctcgcgaaaagagtattccatttaaccagcttccaatgtgattcaatcgtcttctgtaaaccggtct  11368600                                                                                   ------------>MYB.PH3(1)                                                                      --------->AHL20(2)                     <-----------GT1                                  --------->YAB1                -                --------->YAB1                                        <---------AHL20(2)    xxxxxxxxx              ------>MYB46(1)                                 ------->MYC3    ----------->GT1       -              ------>MYB83                               ----------->RAV1(1) <---------TOE2(3)    ---              --------->ANAC58                        --------->AtMYB61      <---------TOE1(3)    <--              --------->ANAC58                   ------>MYB46(1)   --------->WOX13(1)   <---------MYB52(1) xx>smallRNA(i)<---------ATHB12---------->DOF2   ------>MYB83 <-------MYC3 ---------->DOF2  <-------- xxxxxxxsmallRNA(i2)---------->DOF2      --------->YAB1 --------->ANAC46  <---------AHL20(2)---------   tcaattctcaataaccaagcattaaaccgaatgcaaagttgaatcagaaccaaataccacaacatgtgtcaattatataaaggttaaaccgttatcacaa  11368700  Previous    Next  AGI:  At4g21360.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 11364116    to: 11368158    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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