Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           ----------->GT1    --------->ANAC58    --------->ANAC46            --------->AtMYB61    --------->ANAC58            <---------ALFIN1 -------At4g35610              --------->MYB46(3) ------>At4g35610           --------->ANAC58              <-----------HVH21 -------ZAT2                --------->ANAC58            --------->MYB46(3) ------>ZAT2                --------->MYB46(3)         --------->ANAC46          --------->At4g35610 --ARR11(3)              --------->TOE1(2)             --------->ANAC58    ---------->DOF2 ->ARR14(2)             --------->DEAR3(2)             --------->ANAC58 --------->AtLEC2 --ARR14(2)        --------->HSFB2a(2)                ------->GAMYB--------->ANAC58            ------ ->ARR11(3)        <---------HSFB2a(2)          --------->YAB1     --------->ANAC58            ------   agctacaagaaatgtagaatcccagaacccacgaccactctaaattctattgataacacccatcagagtaagaaatgcaaagccgatgaagataacacct  11333700                                                                                                   --                                                 <--------ATHB1                                ------                --------->At4g35610              -------->HAHB4                                ------        <---------At4g35610                      <---------ICU4                                ------     <-------TEIL --------->ZAT18               --------->ICU4                              --------- --------->AHL20(1)                             <---------ATHB51                            <-------- --------->AHL20(2)                           --------->YAB1                                <-------- <---------AHL20(2)                          <---------AHL20(2)                          --------->LBD16 <---------AHL20(1)                          --------->AHL20(2)                         <---------HSFB2a(2) --->TOE1(3)    <---------At4g35610         --------->AHL20(2)  <---------TOE1(2)       --------->HSFB2a(2) --->TOE2(3) <--------P            ---------->DOF2             ------>ZmHOX2a(1)      ------>ZmHOX2a(1)   taataaattcatctggtaagctcacaaacaaaacccaaaatgcgaaattaataattcgaccagtcctagggtttttctcaaacccatcctccagaacact  11333800                                                                                     --------->ANAC58                                                                                 <---------HSFB2a(2)      <----------ID1                              <-------GAMYB                  --------->HSFB2a(2)   ----------->TGA1                              <---------MYB46(3)             <---------ANAC58   ----------->HVH21                            <---------ANAC58                <---------ANAC46 -------->DOF2                              --------->SPL7                <---------YAB1 --->ANAC58                                --------->MYB52(1)          --------->GLK1(2) --->ANAC46                               <---------SPL7              <---------GLK1(2) --->ANAC58             --------->DAG2  <---------At4g35610    <------ZmHOX2a(1)<---------ANAC58 >ZAT14                ---------->DOF2  --------->At4g35610<---------ANAC46  <--------P        ------ -ZAT14            <---------ZAT6 --------->DAG2<---------ANAC46      <---------ARR14(2)      ------- -ZAT18          <---------ANAC46---------->DOF2<---------ANAC58  <------ZmHOX2a(1)  --------->ANAC58   caaaagtgacgacgaaatgtagtggaaaagcatgaaaaagggagcttacggcgtttggactgcgaggaggacgattctggttgcgagaagccatctccga  11333900                                                    --------------->AGL15                        <---                                                    <---------------AGL15                        ----                                                   <-----------------AGL1                     -------    <---------ICU4                       <-------TEIL              <---------At4g35610        <------ --->LBD16                        <-----------HVH21----------------->AGL2              <---------ETT(1) -->ANAC46                <----------DOF2--------->ZAT18           --------->At4g35610--------->DEAR3(2)   gactcaaaattgctacaaatttcttctcctttcgctcgtcaagtgcataaaaatcccaaaatggtagtcttctccctaaattcgggttaccgacaataaa  11334000                                                                                   <---------------AGL15                                                                                   --------------->AGL15                                                                                   ------>ZmHOX2a(1)                                                                                  --------------->AGL15                                                                                  <-----------------AGL2                                                                                  <---------MYB59                                                                                  <---------------AGL15                                                                                 ----------------->AG                   ------>ZmHOX2a(2)                                             <-----------------AG                  <------ZmHOX2a(2)                                              ----------------->AGL1                 <---------ARR14(3)                                              <-----------------AGL2                 --------->ARR14(3)                                              <-----------------AGL1                 --------->ARR11(3)                                              <-----------------AGL3                 <---------ARR11(3)                                         <----------DOF2        <---------GLK1(2)                                                <-----------GT1     <---------WOX13(1)    --------->GLK1(2)                        <---------GLK1(2)               < ------ARR11(3)  <---------AGP1                                     --------->ARR14(2)              < ----->ARR11(3)  --------->AGP1                                    <------ZmHOX2a(1)     <---------LBD16 -->AHL20(2)     <---------ARR14(2)                            --------->TOE1(2)---------->ID1      < ---AHL20(2)     --------->ARR14(2)                      <---------HSFB2a(2)<---------DAG2   <-------   atctccgattgattctcaagatcttagagaatcaaatcgaaaaccttctcaatcgaagtcgagaaactaggattcttactttttcctaatttggggattt  11334100                                                                                 --------->HSFC1(1)                                                                                 <---------HSFB2a(2)                                                                                 --------->HSFB2a(2)                                                                                <---------LBD16                                                                           ------>NtERF2                                                                           <------NtERF2            <                                                                          <---------ZAT18        ----                                                                         <---------ANAC46       -----                            <------ZmHOX2a(1)                            <---------ANAC58       ----- ---------ANAC58           --------->At4g35610                           <---------ANAC58 --------->YAB1 ---------ANAC58         <-----------RAV1(2)                          --------->ALFIN1   <---------YAB1 ---------ANAC46----------->HVH21                                   <-----------RAV1(1)--------->YAB1 --ARR14(2)   --------->ALFIN1               *TSS  <---------TOE1(2)<---------REM1(1) --------->ICU4-   ttgtgtgtgtgtaagtgtgtgactgaagcaggagcctgtagtttcgaaattcgaacgattttgaaattagatgtggcggacttctggaattatcataacg  11334200                                                                                   <----------DOF2                                                                                   ==================                                                                                  <---------ANAC58                                                                              ------->PIF5                                                                              <-------PIF5                                                                              <-------MYC3                                                                              ------->MYC4                                                                              <-------MYC4                                                                              ------->MYC2                                                                              ------->MYC3                                                                              <-------MYC2                                                                             <<<<<<<<<<HY5                                                                             --------->O2                                                                             --------->PIF3(3)                                                                             <---------O2                                                                             =================bZIP_DOF                                                                             <---------bZIP60(2)                                                                             =================bZIP_DOF                                                                             <---------PIF3(3)                                                                             >>>>>>>>>>HY5                                                                             --------->bZIP60(2)          --------->DAG2                                                     <---------TGA1a         ---------->DOF2                                                 <----------------PIF3(2)    <---------ATHB12                                                  <---------ICU4  --------->WOX13(1)                                                --------->GLK1(2)       <------NtERF2 ---------YAB1                                                <---------AHL20(2)  <---------ANAC46<-- ----->DOF5.7(2)                                              --------->AHL20(2)  <---------ANAC58--- ---->TOE2(3)     <-----------GT1 <----------DOF2  ------>NtERF2  <---------AHL20(2)  =============== ---->TOE1(3)    --------->AHL20(2)             --------->RAP2.6(3) --------->ARR11(3)---------->DOF2 ----------->CBF <---------AHL20(2)        ------------>CBF----------->GT1   --------->TGA1a------>NtERF2   ttatcaatcaataaagtatttaaacatatgggctaactttgggcctacaattcggcccaaatgtttaaataatcttgccacgtggctttaaggcggacaa  11334300      ------->MYC3      ------->PIF5                                                                           --------      <-------PIF5                                                                          <--------      <-------MYC2                                                                         ------>MYB83      <-------MYC4                                                                         ------>MYB46(1)      <-------MYC3                                                                        --------->WOX13(1)      ------->MYC4                                                                      <---------MYB55(2)      ------->MYC2                                                                     --------->ANAC58     --------->ANAC55(2)                                                --------->ETT(1)------------>CBF     <---------ANAC55(2)                                                <---------ANAC46<---------ATHB12     --------->TGA1a                                                 ----------->HVH21 -------->P     <---------O2                                                    <-----------RAV1(1)--------->MYB46(3)     <---------TGA1a              <---------ARR14(2)         <---------ZAT18           ------>MYB46(1)     --------->O2                <---------CCA1(2)         --------->DAG2            --------->AtMYB61 ==============bZIP_DOF    --------->REM1(1)              ---------->DOF2 <------NtERF2--------->ANAC58 -------ICU4      --------->ATHB12--------->ARR14(2)<-------TEIL <----------DOF2    <---------MYB52(2) ------>YAB1     <---------YAB1--------->YAB1   <---------------AtSPL8<-----------HVH21------>MYB83 ==============bZIP_DOF    --------->MYB46(3)  ---------->DOF2 --------->ZAT18      --------->MYB46(3)   aaatgacacgtggttttatatgagtggctacaaccatatccaagttatctaaagtacagataaggcgctctgtgtcggagaatgaaaccaaccaatcata  11334400                                                                                            <--------                                                                                          <---------MYB46(3)                                                                                          <---------DEAR3(2)                                                                                        <---------MYB52(1)                                                                                       ------>NtERF2                                                                                       --------->LBD16              --------->ATHB12                                                        <---------DEAR3(1)              <---------ICU4                                                         <---------LBD16              --------->YAB1                                                       <---------ARR14(2)             <---------YAB1                                                    <-------TEIL ---------            *TSS                                                               --------->ABI4(2)           --------->YAB1                                       <---------ANAC46  <---------GLK1(1)           <---------ICU4                                      --------->MYB55(2) <---------At4g35610      --------->MYB46(3)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      ------------>CBF                                         <---------MYB46(3)------->TEIL  <----- --------->YAB1      <----------DOF2     ----------->GT1<---------ANAC58     --------->At5g28300 ->YAB1   <---------ATHB12             ---------->DOF2  <---------ANAC46   --------->ANAC46<-------GAMYB -ATHB12  --------->ICU4    <-----------GT1             <---------ANAC58<---------REM1(2)<---------DEAR3(1)   taagcataaccaataatcatcggcttcaattttcgtcttgagaaagaaaaacaaaatggcttcgatgggtggattacacggtgcatctccggcggttctt  11334500                                                         <------NtERF2                                                        ------>NtERF2                                                        <---------MYB46(3)                                                       <---------DEAR3(1)                                                      <-------GAMYB                                                      --------->ATERF1(1)                                                      <------NtERF2                                                     <---------MYB46(3)                                                     <---------RAP2.3(1)                                                     <---------ATERF1(1)                                                    <---------DEAR4(1)                   --------->At4g35610                                                    <---------ANAC58                     --------->ZAT2                                                    <---------ANAC46                     <---------ZAT2                                                    <---------ANAC58                     <---------At4g35610                                                    <---------RAP2.6(2)                <-----------RAV1(2)             <------ZmHOX2a(2)           --------->HSFB2a(2)                        <---------ZAT2        ---------->DOF2     <---------RAP2.6(3)     <---------DEAR3(1)              --------->ZAT2     --------->TOE1(3)     --------->DEAR3(1)       <---------DREB2C(2)             --------->At4g35610    --------->At4g35610  <---------At4g35610       <---------ABI4(1)          <-----------TGA1    <---------At4g35610<---------ALFIN1  <---------HSFB2a(2) ---------->DOF2  <-----------HVH21 -ARR14(2)  --------->ARR11(3)          <---------LBD16--------->ALFIN1      --------->ETT(2) >ARR14(2)  <---------ARR11(3)   <---------AtLEC2--------->ALFIN1            --------->bZIP60(1)   <- ----HSFB2a(2)         <-----------RAV1(2)     --------->ALFIN1  --------->ARR11(3) <---------At4g35610   gaaggaagcttaaagatcaatggctccagccgtctgaatggctctggaagagtggcggtggctcaaaggtctagacttgtcgtcagagctcagcagagtg  11334600  Previous    Next  AGI:  At4g21270.1    Description:  ATK1 (ARABIDOPSIS THALIANA KINESIN 1); microtubule motor. Identical to Kinesin-1 (ATK1) [Arabidopsis Thaliana] (GB:Q07970); similar to ATK5 (Arabidopsis thaliana kinesin 5), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G05190.1); similar to ATK3 (ARABIDOPSIS THALIANA KINESIN 3), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G54670.1); similar to ATK2 (ARABIDOPSIS THALIANA KINESIN 2), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G27180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39055.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38812.1); similar to unnamed protein product [Vitis vinifera] (G Range:  from: 11329373    to: 11334145    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g21280.1    Description:  PSBQ/PSBQ-1/PSBQA; calcium ion binding. Identical to Oxygen-evolving enhancer protein 3-1, chloroplast precursor (PSBQ1) [Arabidopsis Thaliana] (GB:Q9XFT3;GB:O49568); similar to PSBQ/PSBQ-2/PSII-Q (PHOTOSYSTEM II SUBUNIT Q-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G05180.1); similar to oxygen-evolving enhancer protein 3-2 [Brassica rapa] (GB:BAF81515.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797); contains InterPro domain Twin-arginine translocation pathway signal (InterPro:IPR006311) Range:  from: 11334412    to: 11335783    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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