Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ---------->DOF2                                                                     ------>NtERF2                                                                     <------NtERF2                                                                     --------->LBD16 <---------YAB1                        <---------ANAC46                            --------->DEAR3(1)    <---------ZAT6      <---------ANAC58                            --------->RAP2.6(2) ---------DOF2 --------->ARR14(2)                                  --------->RAP2.3(1)--------->ATHB12 ---NtERF2     <---------ARR14(2)                   --------->ARR11(3)       --------->TOE2(3) ------At4g35610        <---------ANAC58            <---------ARR11(3)       --------->TOE1(3) ----->At4g35610   ------>ZmHOX2a(1)       <------ZmHOX2a(1)     --------->ANAC46   <---------GLK1(2)   gctttagagatagttccaatcctcttccttgttttccatacacgaggagaccgaggtcttggacctctcgccgcacaaacctgaaagattattgaattcg  11293600                                                                                ----------->RAV1(1)                                                                             --------->AtMYB61                                                                 --------->TOE2(3)           <-------                                               ---------->DOF2  --------->YAB1 --------->ANAC46                                      --------->ICU4       --------->ANAC46 --------->MYB46(3)      ----------->GT1            <---------ETT(2)      --------->CCA1(2)   ------->TEIL      <-------   aagacaacatgtgaaattttgaaaccaagagactgtcgaaatgtttagttaaagaaggtataagaaacataaatacgaaccacaacattgttaggctttt  11293700                                                      <---------ARR11(3)                                                      --------->ARR11(3)                                                    ------->TEIL                                                 <---------YAB1                                            ----------->GT1                  --------->KAN4(2)        <---------TOE2(3)                 <---------ICU4            --------->DAG2                                           x     <---------ARR11(3)                  --------->CCA1(2)                                        >>>     --------->ARR11(3) <---------MYB52(1) <---------TOE1(3)            ------>ZmHOX2a(1)        xxxx --DAG2         <---------YAB1          --------->ARR11(3)              --------->LBD16        >>>>>> ---DOF2  --------->MYB52(2)      >>>>>>>>>TBF1  --------->ICU4         ----------->GT1       xxxxxxx   tggtgaagagcttagttgatgattcccttgtttgaagaagaagataaggtaatgaatatctcaagcttagcatcctgaaaaaaatcaattcagagaagaa  11293800                                 --------->TOE1(3)                --------->ARR11(3)          >>>>>>>>>TBF1        <---------ARR11(3)                 <---------ARR11(3)       >>>>>>>>>TBF1          <---------GLK1(1)                  --------->GLK1(1)    >>>>>>>>>TBF1  >>>>>>>>>TBF1 --------->TOE2(3)               <---------GLK1(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <---------CCA1(1) >>>>>>>>>TBF1  >>>>>>>>>TBF1 --------->GLK1(1)        --------->MYB46(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <----------DOF2  <---------RVE1(1) >>>>>>TBF1  >>>>>>>>>TBF1 --------->LBD16   ---------->ID1     --------->ARR11(3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ---------->DOF2   <---------At4g35610 >>>TBF1------------------------>ANAC81  <----------DOF2        <---------ARR11(3) <-----------GT1 xxxxxxxxxxxxxxxx>smallRNA(se3)--------->ARR11(3)    --------->ANAC46 ----------->GT1<---------YAB1   gaagaagaagaagaagaagaagaagaacccagaaatcttaaagctttctccttttcagccactagagatatctagtgaattcaatttacaattgtgtaag  11293900        --------->GLK1(2)                       <<<<<<<<<TBF1  <---------HSFB2a(2)                   <----------DOF2  --------->HSFC1(1)                  <------------------------ANAC81                       ------>ZmHOX2a(1)  <---------HSFC1(1)             ----------->RAV1(2)                            <----------DOF2  --------->HSFB2a(2)           -------->P   <<<<<<<<<TBF1          --------->YAB1      <---------ZAT18   ttttctagagaatcgaaacacatattgttcaacttacctgtgctttcttcttcttcgttctcactctgtctgataatttgcgcttctctgtgtcctccaa  11294000                                             --------->HSFB2a(2)                                             <---------HSFB2a(2)                                             <---------TOE2(3)                                          <---------ARR14(2)                                       <---------ANAC58                                       <---------ANAC58                                       <---------ANAC46                                --------->ANAC58      <---------ANAC46                                --------->ANAC58     >>>>>>>>>MYB98              --------->AHL20(2)                             --------->TOE1(2)      --------->MYB52(1)        ----------->GT1                   *TSS      --------->TOE2(2)     ----------->HVH21        ---------->DOF2              <---------GLK1(2) --------->ANAC46  <---------MYB52(2)--------->AHL20(2)        -------   gttccctctgatgtctgattctcatccaaaacatacgaaatgcgtttatggaagtaacggataaggcccattaactagtaaagttaaataggcccattaa  11294100                                                                                                  ---                                        <-----------HVH21                              --------->At4g35610                                      --------->MYB46(3)                 --------->DEAR3(1)       <--       --------->AHL20(2)          <-----------GT1                    --------->ANAC46 <---------At4g35610    ----------->GT1     --------->TOE1(3)                         ------>ZmHOX2a(1)    <---------ZAT2  ---------->DOF2       --------->TOE2(3)                    <----------DOF2           --------->ZAT2 -->AHL20(2)           ----------->RAV1(2)               <---------CCA1(2)    <---------GLK1(2)   <--   ctagtaaagttaaataggcccattaacctgaaaattttgacccgtcgtctgtattcttcatctctttcctcttcgccatcgattctctgagctggaaacg  11294200             <---------At4g35610  ----------->GT1                      <------MYB46(1)             --------->At4g35610 <---------TOE1(3)                     *TSS   <<<<<<<<<<MYB80             <---------ZAT2      <---------TOE2(3)                     <------MYB83 ------->TEIL ------>ARR14(2)         ----------------->AGL3                       --------->MYB59 -------GLK1(2)         --------->ANAC58                              <---------TOE2(3) -------ARR14(2)        --------->ANAC58  <-----------GT1    <<<<<<<<<TBF1  <---------AtMYB61   aattctctctctctcagcttatagatacccaaattaaggtaattttactcttcttcgtgattcttcttcgattaggttttggtttgaatctcgaatcgat  11294300                                                           --------->LBD16                                                         ------>ZmHOX2a(2)                                                       --------->ARR14(2)                                                       <---------ARR14(2)                                     --------->At4g35610--------->CCA1(2)                                     <---------At4g35610<------ZmHOX2a(2)                                 <---------ARR14(2)    --------->AGP1               ----------->GT1                                 --------->ARR14(2)   <---------GLK1(1)           <---------ANAC46                        --------->ARR11(3)           ----------->ARR10            <---------ANAC58         --------->ATHB12     --------->ALFIN1 <---------AHL20(2)                 <---------ANAC58 <-   gattttcgaactgatttgctcttgaaaatcatgtggttctgctccatgttaaattgagatccgaaattttagaatattagaatgacttgtgaaatgttag  11294400                              <---------ANAC58                         <----------DOF2                 <----------DOF2              --------->ARR14(2)              <---------ARR11(1)                                           ==========================              --------->ARR11(3)                                           ------>ZmHOX2a(1)              <---------ARR11(3)                      <---------ANAC58     ==========================              <-----------ARR10                       <---------ANAC58    <---------ANAC58         --              <---------ARR14(2)          --------->MYB52(1)      --------->At5g28300   <---------At4g35610             <---------CCA1(2)<---------ANAC58   <----------DOF2 ----------->GT1        --------->At4g35610 --------YAB1<---------ARR14(1)      ----------->RAV1(1) ----------->ARR10<---------ANAC58        ---   tatgatacaaaaaccatatctttccttcttttgcttcttcaacataagggtcttttgcttagttttgctgtaaattccttatgggtttttagcagagaaa  11294500  Previous    Next  AGI:  At4g21190.1    Description:  EMB1417 (EMBRYO DEFECTIVE 1417). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18975.3); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18975.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18975.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO49511.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11292202    to: 11294019    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g21192.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO46886.1); contains InterPro domain Protein of unknown function UPF0287 (InterPro:IPR013892) Range:  from: 11294271    to: 11295440    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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