Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ANAC46 <---------ANAC46            <---------LBD16   <------MYB83          <---------REM1(2)   <------MYB46(1)   <-----------RAV1(1)     <---------MYB52(1) ------RVE1(1)            <-------GAMYB              --------->ARR11(3) ------CCA1(1)           <---------MYB46(3)         <------ZmHOX2a(1)           --------->GLK1(2) -----ARR14(2)           <-----------RAV1(1)  --------->At4g35610              <---------GLK1(2)  <-- -----ARR11(3)        --------->GLK1(2)       <---------At4g35610     --------->ZAT14           ----- ---->ARR11(3)       <---------GLK1(2)   --------->YAB1            --------->At4g35610      ---------   tatttctgtggctactcggaacagagtctgttgggttttccaatcggaagcagaggatgttgatggagtcgctgaagtcgagaatcgtttgaagaatcca  11288500                                                                                                    -    <---------ANAC46                                                                          <------    <---------ANAC58                                 <----------DOF2                    --------->TOE2(3)    <---------ANAC58                       --------->GLK1(2)                            ------->GAMYB -------ALFIN1                --------->REM1(1)    ------>ZmHOX2a(1)          <---------GLK1(2)    -- ------>RAV1(1)           <-------TEIL     --------->ARR11(3)  <---------MYB52(2)       --------->YAB1 >GLK1(2)             --------->MYB59      <---------ARR11(3)  --------->MYB46(3)      --------->MYB46(3)   acacttgtgtggataagaaccatttaggtgcttcaccaattcaaaaatctgtcctcttttttctaacaaaccccaaaatcgattcttcaaccaaaattca  11288600                                                                      <------------CBF                                                                --------->TOE2(3)                                                              ------->TEIL                                                              <-----------ARR10                                                             <---------CCA1(2)                                          ---------->DOF2    <---------GLK1(2)                      ---------->DOF2    *TSS            ----------->RAV1(2)        --------->ALFIN1  ---------->DOF2    <------ZmHOX2a(1)===============================RAV      <-------TEIL ----->ZmHOX2a(1)  <---------TOE2(3)  ----------->RAV1(1)<---------ANAC58  <---------ANAC58 -TEIL   ---------->DOF2    >>>>>>>>>>WRKY26             <---------ANAC46  <---------ANAC58     ----- ------->TOE2(3)   <---------TOE1(3) <----------ID1      <---------ANAC58 <---------TOE2(3)     -----   tcctcaaagcccaaagggtttaaggaaagttgatcaagaacaacaaaagatgaaaacttgcctgaatcttagcattgacgttcagagtgtgagttatcct  11288700                                                         ----------------->AGL1                                                     --------->At4g35610                                                   ------>ZmHOX2a(2)                                                 <---------ARR14(3)                                                 --------->ARR11(3)                                   <----------DOF2<------ZmHOX2a(2)                              --------->ANAC58   --------->ARR14(3)                      --------->At4g35610        --------->AGP1         <-----------TGA1                      ----------->RAV1(2)        <---------ARR11(3)     --------->TOE2(3)                      --------->ZAT2             <---------ARR14(2)    --------->ANAC46         --------->ZAT14      --------->ANAC58   --------->ARR14(2)    --------->bZIP60(2)        <--         --------->ZAT18  --------->ANAC58      --------->GLK1(1)    <---------DOF5.7(2)          ---         <---------ZAT18  --------->ANAC58      <---------GLK1(1)   <---------WRKY12          -------         <---------ZAT14 <---------LBD16       ----------->ARR10    <---------WRKY45     --------->TOE1(3)   <-----------HVH21  <---------ZAT2         --------->LBD16        <---------WRKY38(1)  --------->TOE2(3) ->ZmHOX2a(1)         <---------At4g35610   --------->ANAC46       --------->WRKY18(1)   --------->YAB1 ---->At4g35610     <-----------RAV1(2)    <---------LBD16<---------MYB59            <---------AHL20(2)   ctgcaggtcagtgcacagaggctcagctgcgcaagcgcttcattacccggagatcttctgcctaattcagtcaacgtcattactcaatttatcttaacag  11288800                                    <---------bZIP60(2)                                    <---------ANAC46                                    --------->ANAC55(2)                                    <---------ANAC55(1)                                    <---------ANAC58                                    --------->TGA1a                                    ====================bZIP_DOF              <---------ARR14(2)    --------->O2              --------->ARR14(2)    <---------O2           <---------ANAC58         <---------TGA1a           <---------ANAC46         <---------ANAC55(2)           --------->YAB1           <---------ANAC58         ====================bZIP_DOF <-------TEIL          <------NtERF2             <---------ANAC58          -------->HAHB4          ------>NtERF2          <---------MYB52(1)           --------->ATHB12       <---------LBD16         <---------ICU4                 <--------ATHB1    ---------->DOF2         --------->YAB1   <----------DOF2 <---------ATHB12    ==========================================bZIP_DOF  <----------DOF2 <---------DAG2 -------ARR14(2)         <---------ICU4  <---------ANAC58    --------->ICU4                         < ------>ARR14(2)        --------->ICU4   <---------ANAC46    <---------YAB1                        << -->ZAT6<---------DEAR3(1) <---------YAB1<---------ANAC58  --------->YAB1                 --------->TOE2(3)   tatccaaaacgcggcgtatatgtctcattatcatcgttacgtgtcgtcttttcattcgctgtaatgattcatcaccttctcttcttcataaacctcactt  11288900                       *TSS                 <<<<<<<<<TBF1  <<<<<<<<<TBF1              <<<<<<<<<TBF1  <<<<<<<<<TBF1           <<<<<<<<<TBF1  <<<<<<<<<TBF1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <<<<<<<<<TBF1  <<<<<<<<<TBF1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <<<<<<<<<TBF1  <<<<<<<<<TBF1      --------->ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        --------->At4g35610                 -  <<<<<<<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------At4g35610                 < xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ARR14(2)---------->DOF2                         <--- <<<<<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       ------>ZmHOX2a(1)                --------->HSFB2a(2)   cttcttcttcttcttcttcttcttcttcttcttcttcttcagtttcgcaattcgattcctaaagtcagcagttttgtttcttcagtttcttctcaaaccg  11289000               <---------AHL20(2)               --------->AHL20(1)                                       --------->LBD16     <--------         ----------->GT1 <---------ANAC58                <---------GLK1(1)        <----------DOF2        <---------TOE2(3)<---------ANAC58       --------->ANAC58        ------>ZmHOX2a(1)   --------- -------->ANAC55(2)  <---------ANAC58           --------->ANAC58 --------->AHL20(2)         <-------- ---------ANAC55(2)  <---------ANAC58    <---------AtLEC2--------->GLK1(1)    <-----------GT1 ------MYB52(1)<---------AHL20(1)      <---------YAB1 --------->YAB1  <---------LBD16     <---------SPL7   atacttgatcaaggtaaaatatttcttgcttctctctcgttttgaatggtatgcaatcgaaatccaattttttcctgaattttcctttcattcgtacgtt  11289100                                                --------->MYB52(2)                                                <---------MYB46(3)                                              <---------MYB52(1) <----------DOF2                    ------>ZmHOX2a(2)                            --------->YAB1    -- -TOE1(2)                          <---------GLK1(1)                          --------->WOX13(1) <--- >SPL7                            <---------ARR11(3)                      ----------->GT1     <------ -TOE2(2)               ---------->ID1  ------>ZmHOX2a(1)       --------->AHL20(2)      <-----------GT1   gttctttgtaaattagacaaatttttgtcttctcttgatctccttcacgtttgttctgatgtgattttaaatcgatttgtaaatcaaaatttacttctga  11289200    <---------YAB1  --------->YAB1  <---------ICU4 <---------ATHB12                                                  --------->YAB1 ------->YAB1                           <----------DOF2 --------->YAB1--------->MYB52(1) ------WOX13(1)     ----------->GT1     --------->TOE2(3)        --------->ANAC58               ----- ---YAB1--------->MYB59       --------->ALFIN1--------->TOE2(3)  --------->ANAC58              <-----   ttaatcatgttaggcctgaaatttgaaaaaatgtgaggcaaactttaatctcaatgtctgataatgcaagcataacagagcaattttgttttatgtagaa  11289300                                                                                                <----                                                                                                -----                                                                                                <----       ---------->DOF2                                            <---------ANAC58              -----    <---------WOX13(1)                                            <---------ANAC58             <-----  --------->ATHB12                                                <---------ANAC46             ------ <---------YAB1                 <---------HSFC1(2)   --------->YAB1                            <----- ---->GLK1(2)      --------->AHL20(2)  ---------->DOF2 --------->At4g35610             <---------ICU4 ----GLK1(2)    <----------DOF2 --------->HSFC1(2) --------->GLK1(2)               <---------YAB1   tctctgattgaaagggctctttaaaataagaagaagggtctaaaagatggcagaatcagaagagaatagcgttttgtttcccattttcattttgacaatg  11289400  Previous    Next  AGI:  At4g21170.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19290.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66818.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61227.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11286766    to: 11288641    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g21180.1    Description:  DNAJ heat shock N-terminal domain-containing protein / sec63 domain-containing protein. similar to heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G79940.3); similar to heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G79940.1); similar to heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G79940.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO49512.1); similar to unknown [Populus trichocarpa] (GB:ABK92488.1); similar to hypothetical protein OsI_014762 [Oryza sativa (indica cultivar-group)] (GB:EAY93529.1); contains Int Range:  from: 11288923    to: 11292399    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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