Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <------MYB83           ---------->DOF2                                      ----------->GT1       ----------->GT1                                          <------MYB46(1)   --------->AHL20(2)                                 --------->GLK1(2)   --------->ARR11(3)       <---------GLK1(2)        <---------GLK1(2)   <---------ARR11(3)       <---------ARR14(2)       --------->ARR14(2)   <---------AHL20(2)       --------->ARR14(2)      <---------At4g35610    <---------ZAT14   <---------AHL20(1)  <----------DOF2          <-----------HVH21          --------->ZAT14   --------->AHL20(1) <---------ANAC58   --------->YAB1      <---------MYB52(1)    ------>ZmHOX2a(2) ------>AHL20(2)      <---------ANAC58 <---------YAB1<---------ARR14(2)   <---------ZAT6    ---------   tttaatatattgttaaagtgtttggctttggattcgggtttattaatagttgtcagattcttcgtttggttaattagtgttctgatctcaagaattgtaa  11273900                                                                      --------->ARR11(3)                          --------->TOE2(3)                         <---------TOE2(3)                         ----------->GT1                       <---------ICU4                        <---------ARR11(3)                    <---------YAB1               <---------GLK1(2)                  <---------AtLEC2  <---------TOE1(3)               --------->ARR11(3)    <-----------GT1          --------->ICU4              -----------               <---------ARR11(3) <---------GLK1(2)         --------->YAB1                --------->ANAC58 <----------DOF2  <-----------GT1 --------->ARR11(3)       <---------YAB1           ------>ZmHOX2a(1) >YAB1       ----------->ARR10    <---------ARR11(3)     --------->YAB1   ----------->GT1 --------->ANAC58   tgtctttggtttgtttagattttcaatatgttaatagattttcttcacatttgcatcaaacatgataattaaggtctggtttaatccttctcaagtaaaa  11274000                                                                                          <----------                                                                                  <---------GLK1(2)                                                                                  --------->ARR11(3)                                                                                  <---------ARR11(3)                      --------->ARR14(2)                                          --------->ARR14(2)                   <---------ANAC58                                <---------AHL20(2) <----------DOF2                   <---------ANAC58                            <---------AHL20(2) <---------ARR14(2)                  ---------->ID1                              --------->AHL20(2)--------->ANAC58 <---          ---------->DOF2                                ------>MYB83 <---------YAB1  <---------DAG2   --------->ALFIN1<---------ANAC46                      ------>MYB46(1)        --------->ANAC58 ---- >GT1----------->HVH21<---------ARR14(2)              --------->MYB46(3)    <-----------GT1     -----   tagatgtgtgacaaaagtatgtcgtatttgaaaccaaaaatcaacttattcgagttaccaacgttttaatttatgaattcacaagatacttttttccatt  11274100                                                                                      --------->MYB59                                                                            <---------LBD16                                                                            --------->LBD16                                                                           <---------LBD16                                  --------->MYB59                          <---------ANAC58                                <<<<<<<<<MYB98                             <---------ANAC46                               <-------GAMYB                               <---------ANAC58 -GT1   <---------YAB1<---------AHL20(2)                               <---------ANAC58 ------AHL20(2)      --------->AHL20(2)   --------->YAB1               <---------ANAC58 ----->AHL20(2)      <---------AHL20(2)   <---------ICU4      --------->TOE1(2) ---------->DOF2 ---->AHL20(2)      <---------WOX13(1)   <---------ATHB12  <-----------GT1<---------LBD16<---------ZAT18   taatttgtttatgagtaagttgattaatttgtgggttaggcccatcatgaagtaaacctattaacctagtattgtttgcggggaaagttagggcaatttg  11274200                                                                                               ------                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------ANAC58     --------------->AGL15                                                              <----------DOF2     <---------------AGL15                        <-----------GT1      <---------ANAC58<---------ANAC46 <---------GLK1(1)                              <-----------GT1        <---------ANAC58<---------ANAC58 --------->GLK1(1)   ---------->DOF2         <---------AHL20(2)--------->ZAT14         <---------ANAC58   tggatttcttatttaagacagaacaaagaagaaaacaaactctgtatttttttctccatcgccagtaaaccctgcgttctctctcgctcgcttgtgtgtg  11274300                                                                                      ------>ZmHOX2a(1)                                                                                      <----------DOF2                                                                                    ------>ZmHOX2a(2)                                                                                  --------->ARR11(3)                                                                                  <---------ARR11(3)                                                                                <---------YAB1                                                                              <---------ICU4                                     --------->ARR11(3)                       --------->YAB1                              >>>>>>>>>TBF1                        --------->GLK1(1)=================                        --------->HSFB2a(2)                   ---------->DOF2<------ZmHOX2a(2)  <----       *TSS             <---------HSFB2a(2)               <----------ID1     ================HOX2a_HOX2a ----->HVH21       ------->TEIL  ---------->DOF2         ----------->GT1     ========================   atagagagggagagaagaatgaaactcgagaagaagaaaggtattggggcgaagagaagagggaaaaagagttccatcgatcatgatcctttcttagagg  11274400                                                                                       <---------AtMYB61                                                                                       --------->ALFIN1                                                                                <---------MYB46(3)                                                                                <------MYB83                                                                                <------MYB46(1)                                                                               --------->MYB46(2)                                                                               --------->MYB111(1)                                                                               <---------DEAR3(1)                                                                               --------->MYB111(2)                                                                               --------->MYB55(2)                                                 <---------ARR11(1)            <---------MYB46(3)                                      --------->YAB1      --------->ARR14(2)   <---------AtMYB61                                     --------->ICU4       <---------ARR14(2)  <--------P                                     <---------YAB1       --------->GLK1(2) <---------HSFC1(2)            --------->LBD16        --------->YAB1--------->GLK1(2)          --------->HSFC1(2)            ----------->GT1       --------->ICU4 <---------ARR14(2)         --------->HSFB2a(1)          --------->At4g35610     <---------YAB1 ------->TEIL               <---------HSFB2a(1)       ---------->DOF2          --------->YAB1   --------->ARR14(2)         <------MYB83  --------->ALFIN1 ==HOX2a_HOX2a                 --------->ICU4   <---------ARR14(1)          <------MYB46(1)    <----- --ZmHOX2a(1)               <---------YAB1--------->ARR11(3)        <------ZmHOX2a(1) <------ZmHOX2a(1) ==HOX2a_HOX2a            --------->YAB1<---------YAB1   <---------GLK1(2) <---------AtMYB61 <-------   aagagacagagaagcggagaaaattcaattacgatgatgatgatgatatcgaatctgtagaatctgaagaggaagggaaggttggtgaggaggtggagga  11274500                                                   <----------DOF2                                                   --------------->AGL15                              ---------->DOF2  --------->ARR14(2)                   <------MYB46(1)         <------NtERF2                   <------MYB83           --------->LBD16                  <---------DEAR3(1)     <---------ANAC58                  --------->MYB46(2)     <---------ANAC58                 <---------MYB55(1)      <---------ANAC46    <---------At4g35610     --------->ANAC58   <---------ARR14(2) -ZmHOX2a(1)     <--------P --------->ANAC58  <------ZmHOX2a(1)                                  ---- --ANAC46       <---------MYB52(1)      <---------LBD16                                        ------   tgagtttgctcatgagacggtaggcgagaaacgaaagagactggcggaggatactttgaatagaatcgaagaggcgaaacagagagagcatgaagaagat  11274600                        <-------TEIL                       --------->CCA1(2)                       --------->ARR14(1)                               <---------ANAC58                      <---------ARR14(2)                             <---------MYB46(3)           <---------YAB1          ---------->DOF2                  --------->ALFIN1           --------->ICU4  <---------ANAC58                 <---------HSFB2a(2)      <---------At4g35610  <---------ANAC58                 --------->HSFB2a(2)   <------ZmHOX2a(1)  <---------GLK1(2)                 --------->ZAT2  <---------ANAC58        <---- ----->MYB52(1)       --------->ARR11(1)                --------->At4g35610       --------->GLK1(1) --->ARR11(3)         --------->ARR14(2)           <------ZmHOX2a(1)<---------AtMYB61           <----   aacgaggaagatgatgattttagagattcgcttgtggcaaagactctaatgcaggaacagctcgagaagagtggtcgtgttcggagagccaatgcattga  11274700          ---------->DOF2                                                 <------ZmHOX2a(1)       >>>>>>>>>TBF1                                            --------->AtMYB61             -------  --------->ICU4         --------->YAB1               <---------YAB1  ------>ZmHOX2a(1) --------->ANAC55(2) -----TOE2(3)       <---------YAB1            <------MYB46(1)  --------->MYB46(3)       <---------ANAC55(2) -----TOE1(3)  ----------->GT1                <------MYB83   <-----------GT1       <-----------GT1   ggtaatgaagaagaaagttgttatttttcatatttgagtccatgagctaggtttttatatttgaaaccactcctcaggacttgtttaactacgtattcat  11274800  Previous    Next  AGI:  At4g21120.1    Description:  AAT1 (CATIONIC AMINO ACID TRANSPORTER 1); cationic amino acid transmembrane transporter. similar to CAT5 (CATIONIC AMINO ACID TRANSPORTER 5), cationic amino acid transmembrane transporter [Arabidopsis thaliana] (TAIR:AT2G34960.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73404.1); similar to Amino acid permease family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99390.1); similar to hypothetical protein OsI_037835 [Oryza sativa (indica cultivar-group)] (GB:EAY83876.1); contains InterPro domain Cationic amino acid transporter (InterPro:IPR015606); contains InterPro domain Amino acid permease-associated region; (InterP Range:  from: 11270056    to: 11273984    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g21130.1    Description:  EMB2271 (EMBRYO DEFECTIVE 2271); nucleotide binding. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G05410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40414.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 11274307    to: 11276310    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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