Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------YAB1                                              --------->ICU4                     ---------->DOF2        --------->YAB1                    <------NtERF2      <---------ICU4 <----------ID1   <---------ANAC46  <-----------GT1        <-------TEIL   <----------DOF2 ---->ATHB12   --------->ALFIN1    <---------AHL20(2)     --------->CCA1(2) --->ICU4      <---------DEAR3(1) --------->AHL20(2)     <---------ARR14(2) ---WOX13(1) <-----------RAV1(1)  <---------AHL20(2)--------->At4g35610------->TEIL   attacaacaaaaaaactgtggcgcaaagactaccaatttaatcttttcatgatcagatggatacagccaaatgtgcctttagaattttgtttagcaccat  11245600                                                <---------ANAC58                                                <---------ANAC46                     --------->SPL7             <---------ANAC58                    --------->MYB52(1)          ----------->GT1                   <---------SPL7              <-------TEIL         --------->ANAC58                      <---------MYB46(3)         --------->ANAC46              --------->CCA1(2)         --------->ANAC58           <---------YAB1        <---------ATHB12                       <---        --------->SPL7           <---------ARR14(2)     --------->WOX13(1)                       ----       <---------ALFIN1  <---------DEAR3(1)   --------->ALFIN1        ---------->DOF2           -----      --------->LBD16--------->RAP2.6(3)   --------->ANAC46--------->YAB1                    <-------   gtttaatccgcacgccaaaaccttacggctgtgaagttctgatacacggtgcgtgaatcaatcaagaagagaaaaagagaggcatagagaaacttgcacg  11245700    <---------GLK1(1)    --------->GLK1(1)    --------->CCA1(2)   --------->ARR11(3)   <---------ARR11(3)       ---------->DOF2                                                  -------- <---------TOE2(3)       --------->YAB1                                          --------->At4g35610 ----GAMYB<---------At4g35610         <---------DAG2                             <---------YAB1 ----->At5g28300  --------->ZAT14     <----------DOF2                          --------->YAB1-------- ------>GT1       <---------ZAT14  <-----------GT1          <---------YAB1   --------->GLK1(2)     <- --AtLEC2 --------->At4g35610--------->DAG2     <----------DOF2    <---------WOX13(1)       ---------   gttaagatatccagatgaactacacagtgataaagtttcactttttatgtctttgaagaagcattatagattgatagagaatcatcagagcttaacctga  11245800                                 <---------At4g35610                                 --------->At4g35610                                 <------NtERF2                                 <-------GAMYB                                 --------->ATERF1(1)                                ------>NtERF2                                <---------ERF1                                <---------MYB46(3)                                <---------ATERF1(1)                               --------->ATERF1(2)                               <---------RAP2.3(3)                               <---------ANAC46                               <---------RAP2.3(2)                               <---------ATERF1(2)                               <---------RAP2.6(2)                               <---------DEAR3(1)                              --------->DREB2C(1)                              --------->ATERF1(1)                              <------NtERF2                              --------->DEAR4(2)                              <---------DREB2C(1)                              --------->RAP2.3(1)                             <---------ERF1                             <---------ATERF1(1)                             <---------RAP2.6(1)                             <---------DEAR4(2)                             <---------ORA47(2)                             <---------RRTF1(1)                             <---------RAP2.3(1)                             ------>NtERF2                            <---------DREB2C(2)                            <---------RAP2.6(2)        <----------DOF2     <---------RAP2.3(3)   --------->HSFB2a(1)      <---------RAP2.3(2)   <---------HSFC1(2)       <---------RRTF1(2)   --------->HSFC1(2)       <---------ATERF1(2)                 <---------RVE1(1)   --------->MYB46(3)       <---------ANAC46                   --------->ARR11(3) <---------HSFC1(2)  ------->TEIL              <---------DEAR3(1)                 <---------GLK1(2)  <---------HSFB2a(1) ->TOE1(3)     --------->LBD16<---------At4g35610              <---------ARR11(3) --------->HSFB2a(1) ->TOE2(3)     ----------->HVH21<---------RAP2.3(1)          ----------->ARR10    --------->HSFC1(2) --------MYB52(2)           --------->ATERF1(2)        --------->DAG2 <---------TOE1(3) -->RAV1(2)  <---------LBD16<---------RRTF1(3)        ---------->DOF2 <---------TOE2(3)     <--------   aacgaaccatctttctccggacagagaatggcggcggctgtctgaagttattttgagaaagtgaagatttttagggttctgagaagtttccatcacttga  11245900          --------->AHL20(2)          <---------AHL20(2)   <---------GLK1(1)     <---------AHL20(2) <---------YAB1                            --------->ANAC46    --------->AHL20(2)--------->YAB1                      ------------>CBF <----------DOF2     <---------YAB1                <------------CBF -ANAC55(2)<---------YAB1      <------------CBF ------------>CBF *TSS   agtcttttaaattttaatagtatatgataatggaattgcctcgattctaatgcaattgacgacaatgcccacaagaacagagcaaaatgtctccattctc  11246000                                                            <---------ANAC58                                                            <---------ANAC58                                                         --------->ANAC46                       <----                                                        --------->SPL7                          <----                                                        ------>MYB46(1)                 --------->ARR14(2)                                                        ------>MYB83  --------->DOF5.7(2)    --------            <---------At4g35610    <-------TEIL        --------->MYB52(1)               <---------ARR14(2)       --------->ZAT14      --------->HSFB2a(2)       --------->TOE2(2) --------->MYB52(1)   --------       <---------ZAT14      <---------HSFB2a(2)       --------->TOE1(2) <---------DOF5.7(2)  --------   agaaacctctgttctgctacttcccatggtcgagaaatgcataaacctcttgcaaacctacggcgtttcatcgataacgaaactcagacaaatccacgct  11246100                                                                                            <--------                                                                                           <---------ANAC58       --------->LBD16                                                                     <---------ANAC58       ------>NtERF2                <---------ANAC58                                    <---------CCA1(2)      --------->ANAC58              <---------ANAC58                                ------>MYB83      --------->ANAC58             <---------ZAT2                                   ------>MYB46(1)      --------->ANAC46             --------->ZAT2                                 --------->AtMYB61  --------->WOX13(1)             ------>NtERF2                                    <---------MYB111(2) -----DAG2                      --------->DEAR3(1)                                <---------MYB111(1) ------DOF2                    <------NtERF2                                      --------->DEAR3(1) ->ANAC46                      <----------CDC5                                 <---------ALFIN1 ->ANAC58                     ------>NtERF2    --------->ANAC46  <-----------GT1 --------->ANAC46 ->ANAC58                    --------->ANAC46<---------ALFIN1   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ttttcaatccgccatggagtctcaatctcagacgccgagcttgggaaacacctcatcttctaccttgtttctcttccttctccacctcccatgtcttacg  11246200                                        <---------AHL20(2)                   <------MYB83                                      --------------->AGL15                  <------MYB46(1)                                      <----------DOF2                        ----------->GT1                                      <---------------AGL15                <---------WOX13(1)                                     <-----------------AGL3         ------>NtERF2                                     <-----------------AGL2       --------->SPL7                                     <-----------------AGL1      <---------ATERF1(1)           --------->HSFB2a(2)     <---------ARR11(3)           --------->ARR14(2)                 <-  ---------->DOF2       --------->GLK1(1)                       <---------ARR14(2)            <------ -SPL7     <---------HSFB2a(2)<---------ATHB12         --------->YAB1  ------>NtERF2          <------   ctcacaaagtcttctccaagattgagaaacccatcaatgtctttatttggaacacattgatcagaggctacgccgagattggtaattccatctctgcttt  11246300                                                                                        <------NtERF2                                                                                        <-------GAMYB                                                                                       <---------MYB46(3)                                         --------->ARR14(2)                           <---------ANAC46                                         <---------ARR11(3)                   <<<<<<<<<<<<<<<<<LFY            --------->At4g35610          <---------GLK1(2)                ----------->TGA1            <---------At4g35610          <---------ARR14(2)               ----------->HVH21       <---------ANAC58                ----------->ARR10            <---------TOE1(3) <---------RAP2.6(2)       <---------ANAC58       <------MYB46(1)                       <---------TOE2(3) <---------ANAC58       <---------ANAC46       <------MYB83                    <---------------AGL15   <---------ANAC58 ----------GT1               <---------MYB46(3)               --------------->AGL15  <---------LBD16 ----DOF2<---------MYB52(1)  --------->MYB59              <---------MYB52(1) <---------bZIP60(1) ---DAG2<-----------HVH21    <---------AtMYB61--------->YAB1  <---------YAB1 --------->bZIP60(1)   ttctctataccgtgagatgagagtctctggtttggtcgagccagatactcatacttatccgtttcttattaaggctgtgacgacaatggcggatgttaga  11246400                                                  ------>ZmHOX2a(2)                                            <-------GAMYB                                           --------->MYB52(2)                                           <---------MYB46(3)                      <---------YAB1   <---------MYB46(3)                     <-------GAMYB <---------ANAC58                    ----------->GT1<---------ANAC58                             --------->ANAC58   --                    <---------MYB46(3)<---------AtMYB61                         --------->ANAC46   <-                  <---------MYB52(1)<----------DOF2                   <----------DOF2          <-----           <-------TEIL   --------->YAB1  <-------TEIL              --------->At4g35610  <---------ANAC46 <------ZmHOX2a(1)<-------GAMYB    <---------ANAC46          --------->GLK1(1)  --------->ANAC58  ---   ttaggagagacgattcattcggttgttataagaagtggctttggttcgttgatctatgttcagaactctctgcttcatttatacgcaaattgtggagatg  11246500  Previous    Next  AGI:  At4g21065.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40380.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11245965    to: 11247818    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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