Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->WOX13(1)                                               <<<<<<<<<GATA-1                                           <----------DOF2                                         <------ZmHOX2a(2)                                        <---------ARR14(2)                                        <---------ARR11(3)                                        <---------ARR11(1)                                          -                                        --------->ARR11(3)                                       ----                                        --------->ARR14(2)                                    -------        --------->ZAT14 --------->ARR11(3)------>ZmHOX2a(2)                      <---------MYB52(1)<- -ARR11(3)              >>>>>>>>>>GT-1 <---------ARR14(1)                   <---------ARR11(3)------- >ARR14(2)             --------->YAB1  <---------CCA1(2)          --------->ANAC46 <---------MYB46(3)   cagcgtttattgcagtccaaaacaatgatatagctctgttcggatctttatctatcaactgttcttccacataaacaatatccatttgttagaaaacctc  11185500                                                                                        <------MYB46(1)                                                                                        ----------->GT1                                                                                        <------MYB83                                                                                 ------>ZmHOX2a(1)                                                                                 --------------->AGL15                                                                <------ZmHOX2a(1)<---------------AGL15                                                     <-----------GT1            <-----------------AGL1                                                 --------->ARR11(3)             <-----------------AGL2 -------->YAB1      <------ZmHOX2a(2)            <---------ARR11(3)             --------->TOE2(3) ----->WOX13(1)    --------->ARR11(3)           <---------RVE1(1)           <---------GLK1(1) -->TOE1(3)  <---------HSFB2a(2)   ---------->DOF2  <---------AHL20(2)      --------->GLK1(1)-------- --------ATHB12    <---------ARR11(3)    <XXXXXXXXXXXXXXXXXXXXMIR844 --------->GLK1(2) --------->MYB59 -->TOE2(3)<-------TEIL  --------->YAB1 <----------DOF2   <---------ANAC55(2)  ----------------->AGL3   aatcatagacaggttcaagaagatcactcaaaatttgaaaagcttttaagagattttatcacatgaggaagaatctagaattcctaaattaggtcaaaag  11185600                                                                 <------ZmHOX2a(1)                                                           --------->bZIP60(1)                                                           <---------ANAC55(2)                                                           <---------bZIP60(1)                                                           --------->TGA2(1)                                                           <---------ANAC46                       <<<<<<<<<<E2Fc                      --------->ANAC55(2)                       <<<<<<<<<<E2Ff        <-------MYC2  <---------TGA2(1)                       <<<<<<<<<<E2Fe        ------->MYC3  ====================================bZIP_DOF                       <<<<<<<<<<E2Fd        <-------MYC3  <---------TGA1a                       <<<<<<<<<<E2Fb        ------->MYC2  <---------ANAC58                       <<<<<<<<<<E2Fa       <---------ANAC58    ----------->GT1                      --------->LBD16       <---------ANAC58<---------SPL7                     <---------LBD16      <---------ANAC46 <---------ANAC58                     <---------ANAC46  --------->TOE2(2)   --------->TGA1a                    <---------LBD16    --------->TOE1(2)   <---------O2                         -----           <---------ANAC58           ----------->RAV1(2) <---------TOE2(3)                    ------           <---------ANAC46         <-----------GT1      <---------TGA2(2)          <---------DAG2      ----------->RAV1(2)          --------->KAN4(2)    ----------->HVH21           <----------DOF2 -->DOF2   <---------ANAC58      <---------YAB1         ----------->TGA1            =================   aaaaattcccctgtcttgttttcgcgggaaaattgattatacctgcgcgtgtttggctctgacgtaaggagaatcaccagaaggaactttatgaacaatg  11185700                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                          ----------->RAV1(1)      <-                                                                        --------->ABI4(1)          <-                                                                        ------>NtERF2              <-                                                                        <-----------HVH21         <--                                                                       --------->RRTF1(2)         ---                                                                       --------->DREB2C(2)        <--                                                                       --------->RRTF1(3)         <--                                                                       --------->ANAC46           <--                                                                       --------->RAP2.3(3)        <--                                                                       --------->RAP2.3(2)        <--                                                                       <---------ATERF1(2)       ----                                                                       --------->ATERF1(2)       ----                                                                       --------->RAP2.6(2)       <---                    --------->DEAR3(1)                                 --------->DEAR3(1)        <---                  ------>NtERF2                                       --------->RAP2.3(1)       <----                 ----------->HVH21                                    --------->ERF1            <----         --------->ANAC58                                             --------->ORA47(2)        -----         <---------TGA1a                                            --------->DEAR3(1)          <----         --------->ANAC46                                          --------->ATERF1(1)          <----         --------->ANAC55(2)                                 <---------At4g35610                -----         --------->ANAC58                           ------>ZmHOX2a(1)<---------ATERF1(1)        <----         --------->TGA1a                           <---------ALFIN1<------NtERF2                <----         <---------O2                            ------>ZmHOX2a(1)<---------ATERF1(1)          <-----         --------->O2------>NtERF2         ----------------------->TaNAC69(2)                  ------         <---------ANAC55(2)              <---------MYB46(3) --------->At4g35610               <-----      <------ZmHOX2a(2)                   --------->ABI4(2)<---------WRKY12     <---------ARR11(3)---     <-----------HVH21                   <---------AtMYB61<---------MYB52(1)--------->O2       ------ ------------------>TaNAC69(2)           --------->ALFIN1<-----------TGA1<------NtERF2         <----- ----->GT1       --------->DEAR3(1)<---------ARR14(2)    <-----------HVH21<---------ALFIN1    ------- ==================bZIP_DOF        --------->ARR14(2)   --------->ANAC46<---------ATERF1(1)   <------   tgaaacggatcacgtctctccgacgacgaagaacaagaatacggtggtctcctcctctccgtcatcggcatcgccgccacatgatcacttgttctcgccg  11185800       --------->ZAT14       <---------ZAT14    <---------ANAC46   <------NtERF2  --------->LBD16 <---------DEAR3(1) <---------ANAC46 -------->ATERF1(1) ---------At4g35610 -------->At4g35610 ---------ABI4(1) ------NtERF2 ---------LBD16 --------RAP2.6(1) --------DEAR4(2) ---->NtERF2 --------ERF1 --------ORA47(2) --------RRTF1(1) --------RAP2.3(1) --------ATERF1(1) -------DEAR3(1) ------>DEAR3(1) -------RRTF1(2) -------RRTF1(3) -------RAP2.3(3) -------RAP2.3(2) -------ATERF1(2) ----->ATERF1(1) ----->RAP2.3(1) ------ABI4(1) ---NtERF2 -----DEAR4(2) -----ATERF1(1) ->NtERF2 -----RAP2.6(1) -----ERF1  --------->ZAT14 ---->LBD16 <---------ZAT18 -----ORA47(2) -----RAP2.3(1) ----ATERF1(2)                                                                                    --- --->ATERF1(2)               --------->ANAC58                                                  ------ ----DEAR3(1)                --------->ANAC58                                                  <----- ------>ATERF1(2)     --------->ALFIN1                                                         ------ --->DEAR3(1)       <---------ZAT2          ----------->HVH21                                  <----- ----RAP2.3(2)      --------->ZAT2     --------->ANAC46                                 ---------->DOF2 -->ATERF1(1)     <-----------RAV1(2) <---------REM1(2)        <---------GLK1(2)     --------->At4g35610 ---LBD16----------->GT1     --------->ANAC46           <----------DOF2  ------------>CBF--------->DAG2   gcggcggagtatagtaaactccaggtggagcacgacgctctacgcagggacacattttctttttcgattctctctgtcaatttactcagataaagttcga  11185900          --------->LBD16         --------->HSFB2a(2)         <---------HSFB2a(2)        <---------LBD16   <----------DOF2                                       <------ZmHOX2a(2) ------->DOF2                                           <---------ARR11(3) --->HSFC1(1)                                       ---------->DOF2      <----------DOF2     <-------GAMYB ----HSFC1(1)--------->GLK1(1)                --------->O2      --------->ANAC58            <-------- --->HSFB2a(2)          <---------ANAC46   --------->DEAR3(1)   --------->ANAC58            <-------- ----HSFB2a(2)     <---------GLK1(2) --------->GLK1(1)  --------->ARR11(3)          --------->GLK1(2)   gaaagcttttcccagaattcaaattctcgtgttcttcagaaatcgccctcgtgaaaaagatcaagaacgcaaatgctttgaaaacgaatcagtgtcgttg  11186000                                                      <---------TOE2(3)                                                      <---------TOE1(3)                                                     <---------DOF5.7(2)                     --------->YAB1                --------->DOF5.7(2)                  <---------ICU4                  --------->TOE1(3)            ----------->GT1          <---------AHL20(2)         ----------->GT1             --------->AHL20(2)  --------->ALFIN1       ---------->DOF2   --------->ANAC58         --------->TOE2(3)   ----------->GT1 -MYB46(3) ----------->GT1 <------ZmHOX2a(1)      <----------DOF2  --------->DAG2        <---------ICU4 -ANAC46--------->DAG2   --------->ANAC58--------->AHL20(2)       ---------->DOF2   ------>ZmHOX2a(2)   aagaagtgagaaagtgataaaaatcacaaggacttgtatttaaataaacaaactttaacgtaggggcaaaaagggtaatctactgatctaatctttaaac  11186100                                            <---------TOE2(3)                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                             --------->GLK1(2)                             --------->ARR14(2)                             --------->ARR14(3)                             <---------ARR14(3)           <---------ZAT14   --------->ARR11(3)           ----------->GT1           <---------ZAT18   <---------ARR11(3)          <---------TOE2(3)           --------->ZAT14   <---------ARR14(2)          <---------TOE1(3)   ------->GAMYB   <----------ID1         ---------->DOF2<---------YAB1            ==================  --------->MYB46(3)        <------ZmHOX2a(1)   <-------TEIL          ---------->DOF2              <- <---------At4g35610    ---------->DOF2--------->YAB1 <---------AHL20(2)           ---------->DOF2 ==   ttcaacggaccagtagacttggagacaaaaggatcttgtaaacataaaggttcgattttatggttaatctgcaaaagctcatggcaaaagaactaaacga  11186200                      --------->TGA2(2)                     <-----------HVH21                     <-----------TGA1                    <<<<<<<<<<HY5<---------ANAC46                    --------->ANAC58                    --------->TGA1a                    --------->bZIP60(2)                    <---------O2 <---------ANAC58                    --------->O2 <---------ANAC58                    <---------ANAC55(2)                 <--------P                    --------->ANAC55(2)        <---------GLK1(2)                    --------->ANAC55(1)      <---------ARR11(3)                    --------->ANAC46         --------->ARR11(3)                     <----------DOF2                    --------->ANAC58         --------->AHL20(1)                     -----------------                    =============================================MYC_MYB           <-----------------                   <-----------STF1         <---------AHL20(2)                <------ZmHOX2a(2)       ----------------------->TaNAC69(2) --------->AHL20(2)             ---------->DOF2 =============================bZIP_DOF   <---------ARR11(3)             <---------WRKY45  <----------DOF2 ---------DOF2     <-----------bZIP911(2)--------->AHL20(1)<---------ARR14(2)--------->ARR11(3)   <-- =============================bZIP_DOF   <---------AHL20(1)--------->ARR14(2)<---------ARR11(3)  ----   gctttgagttttatagatgaacacgtcatcacattgcttgcaatatatatattctctggtagatactactctagtcaaagatcagtctttttcttttcta  11186300                         --------------->AGL15                                  ----------------->AGL2                         <---------------AGL15                         --------->HSFB2a(1)                         <----------DOF2                               <---------At4g35610           <---------ALFIN1    <---------TOE2(3)                       <---------HSFC1(2)    <----------DOF2<---------At4g35610                             <---------REM1(1) ------>TaNAC69(2) --------->At4g35610              ----------->RAV1(1)--------->HSFC1(2) -------ANAC81   --------->HSFB2a(2)         <----------DOF2     --------->At4g35610 -------ARR11(3) <---------HSFB2a(2)       <---------At4g35610 --------->MYB46(3)                   - ----->REM1(1)   <-----------RAV1(2)<------NtERF2--------->HSFB2a(2)  ------->TEIL                  -   catcttctttcttccactcccagatgactttataaggctgcattgagctttctgcaacattctcaacagatgaagcttcccgtctaaaaatagctatctg  11186400  Previous    Next  AGI:  At4g20900.1    Description:  MS5 (MALE-STERILE 5). similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT5G44330.1); similar to unknown [Populus trichocarpa] (GB:ABK95592.1); contains domain SSF48452 (SSF48452) Range:  from: 11184114    to: 11185855    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g20910.1    Description:  HEN1 (HUA ENHANCER 1). similar to double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana] (TAIR:AT4G20920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42550.1); contains InterPro domain Methyltransferase type 12 (InterPro:IPR013217); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR006630); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) Range:  from: 11186095    to: 11190702    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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