Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->ANAC58                             <---                                                    --------->ANAC58                             ----                                              <---------ANAC46                              <--------                                              <---------ANAC58                             --------->AHL20(2)                                              <---------ANAC58                             <---------AHL20(2)                                     ----------->GT1--------->ANAC46            <---------At4g35610                           <---------ICU4     <---------AtLEC2                  --------->At4g35610       <-----------GT1    --------->ICU4 --------->MYB52(2)                     <---------ZAT2   <--- --------->RAV1(1)   --------->YAB1  <---------MYB46(3)                <---------YAB1      <---------AHL20(1)   gcaacagattaactattctaaaatcgtcatatttatgagttgttatttgcctgtaagccatttacttctaatttctattgtcagcttatctaattaattt  11181700                                                                              --------->ARR14(2)                                                                              --------->GLK1(2)                           <---------YAB1                                     <---------ARR14(2)                         <---------------AGL15                          --------->ARR14(2)                        <-----------------AGL3                     --------->ANAC58      <----------DOF2       ===================================MADS_MADS    --------->ARR14(2)     ------->TEIL --------->AHL20(2)       <---------------AGL15--------->ATHB12           <---------ARR14(2)     <---------ARR11(1)       --------------->AGL15--------->ATHB51          --------->GLK1(1) <---------ARR14(2) <---------AHL20(2) ---MYB83              <---------ANAC58        ---------->DOF2--------->YAB1 <---------CCA1(2) ------->GT1           <---------ANAC58     ----------->RAV1(1) ----------->TGA1 <----------DOF2 -AHL20(2)   <---------ANAC55(2)  <---------ANAC46----------->GT1  --------->ANAC58 <---------AtMYB61 ---MYB46(1) ----------->GT1-------->ATHB1 <----------ID1     <---------ICU4 <---------ARR14(1)   ggtgatttgctaaataagtaaaattgcctattattggtgtgaaaaacaacaaaggaaaatccactaatgacgcaaattcgaatcttttggtctttaattt  11181800                  <------ZmHOX2a(2)                                                                 -                 <---------AGP1                                                                     -                 --------->ARR11(3)                                                                 <                 <-----------ARR10                                                               ----                 <---------ARR14(2)                                                             <----                 --------->ARR14(2)                                                             <----                 <---------ARR11(3)                                                          <-------                <------ZmHOX2a(1)    --------->DAG2                                       <---------AHL20(1)            ---------->DOF2 --------->AHL20(2)                                            --------->AHL20(2)     --------->LBD16        --------->YAB1                          <----------DOF2       --------->AHL20(1) <---------ARR11(3)        <---------ATHB12                      <-----------GT1         <---------AHL20(2) <---------ARR14(2)    <---------ATHB12 ----------->GT1     --------->AHL20(2)          --------->ICU4 --------->ARR14(2)------>ZmHOX2a(2)---------->DOF2       <----------DOF2          ----------->GT1  <   caatatccgaagaaaaaaggatctaatcaataatataaaaaagcgtagaaaacaatttgcctttatataactttcacgagtgattttgtaaatattttat  11181900                           <---------CCA1(1)                           <---------RVE1(1)                          <---------AHL20(1)                          <---------ARR11(3)                          --------->ARR11(3)                          --------->AHL20(1)                        ----------->ARR10 -------->AHL20(1)    ---------->DOF2 -------->AHL20(2)   <------ZmHOX2a(1)                                    ----------->GT1 ---------AHL20(1) <---------TOE1(3)                          <---------TOE2(3) ----->YAB1   --------->ARR11(3)                             --------->DAG2 -----AHL20(2)<---------ARR11(3)                            --------->MYB52(1) -----YAB1   --------->RVE1(1)                              ---------->DOF2 --AHL20(2)  --------->CCA1(1)                    <-----------GT1      ------>MYB83  --------->YAB1 ---------AHL20(2) <---------TOE2(3) <---------YAB1  ------->GAMYB     ------>MYB46(1)  ----------->GT1   aattaattaacaaaaatatctaaggaaagatatttgtttttgattcgctgtataacagcacataaaggaaaccaaatcgaaaaactatcagggtaatatc  11182000                                 --------->AHL20(2)                                 <---------AHL20(2)                                 --------->ATHB12                                 --------->ATHB51                                --------->AHL20(2)                                <---------AHL20(2)                                <---------AHL20(1)                        ---------->DOF2                    ----------->GT1                    --------->ANAC58                  --------->DAG2                    --------->ANAC58                 ---------->DOF2                             <---                  <------ZmHOX2a(1)             ----------->GT1     ----------->TBP --------->ZAT14   aaaaaccaatagaagtctaaggacgaaaatgcaaattatttgagaaactagagaaaaaaggaggtaaactatatatagccgattactactctcatttgtt  11182100                                                                                                  <--                                                            <---------HSFB2a(2)       --------->LBD16                                                            --------->HSFB2a(2)      --------->LBD16           <---------ATHB12                        <---------ICU4                   <---------HSFB2a(2)   --------->ANAC46                             --------->YAB1             --------->DAG2      ------   *TSS  --------->WOX13(1)          <------NtERF2<---------YAB1          ---------->DOF2  ---------- <-----------GT1                  --------->ATERF1(1)     <---------HSFB2a(2)    <---------ARR14(2) --------TBP--------->YAB1       <---------ATERF1(1)      --------->HSFB2a(2)    --------->ARR14(2)--   tttatacccctcaatcataaacaataaacagagggagtcgccaaattttctcatcattttctcgagaaaatagactaaaagcgattcccgagagaaagaa  11182200                                                                                     <---------HSFB2a(2)                                                                                     --------->HSFB2a(2)                                                                                    <---------LBD16                                                                        ------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)           <-                                                                      <---------ARR14(2)           <-                                                               <---------ARR14(2) --------->ARR11(3)<                                                             --------->LBD16    ----------->ARR10  <-                                                           <---------LBD16  <---------ZAT2         <- --------ID1     --------->LBD16                           --------->ZAT14  --------->ZAT2         <- ---->DOF2   --------->TOE1(2)                             <---------ZAT18  --------->At4g35610   <-- >DOF2       --------->TOE2(2)                             <---------ZAT14  <---------At4g35610------ ---------------------->ANAC81                       <-----------HVH21--------->ARR14(2)  -----------   agaacaaaaaaaaaacatccgagtgaaaatgagagaaattcttcatattcaaggaggtcagtgcggaaaccagatcggagctaagttctgggaagttatt  11182300        --------->ANAC58        --------->ANAC46        --------->ANAC58     --------->ZAT2    --------->ANAC58                           --------->CCA1(2)    --------->ANAC58                           <------ZmHOX2a(2)  --------->DEAR3(1)                           ======================HOX2a_HOX2a  <---------ANAC46                            <---------ARR14(2) ------>NtERF2                                <-----------ARR10 <------NtERF2                                --------->ARR11(3) --------DEAR3(1)                  --------->ALFIN1 --------RAP2.6(2)               --------->O2 --------->AGP1 ---------RAP2.3(1)              <---------bZIP60(2)      ---------->DOF2              --------->MYB52(1) --------RAP2.3(2)               <---------O2 <---------AGP1  <------ZmHOX2a(1)<---------TOE2(3)    < --------ANAC46                  ====================================bZIP_DOF <-----------GT1-------- --------RRTF1(2)                <---------TGA1a------>ZmHOX2a(2)           <---------AHL20(2)<------NtERF2 -------LBD16 --------->ICU4--------->WOX13(1)<---------ARR11(3)           --------->YAB1    -------- ----------------->TaNAC69(2)    --------->TGA1a=====================HOX2a_HOX2a    --------->ZAT2<-- >GT1<---------ZAT2      <-----------HVH21    --------->ARR14(2)<------ZmHOX2a(2)  ------->TEIL   ---   tgcggcgagcacggtattgatcaaaccggtcagtcatgtggcgatacagatctacagcttgaaaggatcaatgtctattttaacgaagctagcggaggca  11182400                                                                    <------MYB83                                                                    <------MYB46(1)                                                                   <---------MYB46(3)                                                                   --------->MYB59                                                                  <---------MYB55(1)                                                         ------>ZmHOX2a(2)        ------>NtERF2                                                        --------->CCA1(2)        ------>NtERF2                                                        <------ZmHOX2a(2)        --------->LBD16                                                       <---------AGP1           <---------RAP2.6(2)                                                       --------->ARR11(3)    <-----------GT1                                                       <---------ARR11(3) <---------ARR11(3)                          ------>ZmHOX2a(2)            <-----------ARR10  <---------ARR14(2)       ==========================HOX2a_HOX2a           --------->ARR14(2) --------->ARR14(2)       ------>ZmHOX2a(1)<---------AGP1                 --------->AGP1     <---------GLK1(2) -------TEIL            ------->TEIL                   <---------ARR14(2) --------->ARR11(3) ->ANAC58------->PIF5   <---------ARR14(2)   <---------GLK1(2)   <---------MYB52(1) ->ANAC58<-------PIF5   --------->ARR11(3)   --------->ARR14(2) <---------SPL7 <---------LBD16 -------ARR14(2)        --------->ARR14(2)   <---------ARR14(2) <---------RAP2.6(3) ------>ARR14(2)  <---------YAB1----------->RAV1(2)   <---------CCA1(2) ----------->ARR10   aatacgttcctcgtgctgttcttatggatctggagcctggaactatggattctctcagatctgggccgtttggtcagattttccggcctgataacttcgt  11182500                                                    <---------ZAT2                      --------->MYB52(1)            --------->ZAT2               <---------ANAC46             --------->ANAC46              <----------DOF2     <------              <---------ANAC46             <---------LBD16    <---------WOX13(1)              -------             <---------ZAT2              <---------REM1(2)  --------->ATHB12           <------ZmHOX2a(1)             --------->ZAT2       ----------->GT1   --------->At4g35610  <---------ANAC58     <------          <---------At4g35610    --------->DAG2     <---------At4g35610  <---------ANAC58     -------         <-----------RAV1(1)   ---------->DOF2    --------->ZAT18<---------GLK1(2) <---------ANAC46   ttttggtcagtctggtgctgggaataactgggcgaaaggtcattacacggagggagctgagttgattgattctgtgcttgatgttgtgaggaaggaagct  11182600  Previous    Next  AGI:  At4g20890.1    Description:  TUB9 (tubulin beta-9 chain); structural molecule. Identical to Tubulin beta-9 chain (TUBB9) [Arabidopsis Thaliana] (GB:P29517); similar to TUB4 (tubulin beta-4 chain) [Arabidopsis thaliana] (TAIR:AT5G44340.1); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB3 (TUBULIN BETA-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to beta-tubulin R2242 - rice (GB:JC2511); similar to Tubulin beta-3 chain (Beta-3-tubulin) (GB:Q40665); similar to beta tubulin 3 [Hordeum vulgare subsp. vulgare] (GB:CAM58981.1); contains InterPro domain Beta tubulin, autoregulation bin Range:  from: 11182103    to: 11184083    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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