Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->YAB1                      <---------KAN4(1)                  --------->ANAC46       -------->HAHB4                      --------->KAN4(1)     --                  --------->ANAC58      <---------YAB1                      <---------KAN4(2)      <-      --------->TOE2(3)                 --------->ICU4         --------->ARR11(3)                <---      --------->TOE1(3)               --------->YAB1           <---------ARR11(3)           ---------     ----------------->AGL1          --------->ICU4          <---------TOE2(3)        --------->TOE2(3)  ----------->HVH21    ---------->DOF2<---------ICU4  --------->YAB1        --------->ARR14(2)<------ ------GT1        --------->ANAC58 --------->YAB1  --------->WOX13(1)       <---------ARR14(2)<------ -->AHL20(2)<------ZmHOX2a(1)  ---------->DOF2    ---------->DOF2  <-----------GT1    <----------DOF2   ctaagtgaccttaaggagacacacaaaaagacacaaagcataatgataaacatcaagcagaataagattttacaatcgaatattcaaactttagtgatta  11125800       <---------At5g28300                                                              --------->MYB46(3)      <-----------GT1                                                                  ------------>CBF  <---------AHL20(2)                                  ------>ZmHOX2a(2)            --------->ANAC46  --------->AHL20(2)                      --------->YAB1            --------->YAB1 --------->ANAC58 ------->AHL20(1)                         --------->AHL20(2)        --------->AHL20(2)----------->RAV1(1) --------AHL20(1)                         <---------AHL20(2)  --------->TOE2(3)    --------->ANAC58 ------TOE2(3)                         --------->YAB1<------ZmHOX2a(2)           <---------DOF5.7(2) >ATHB12      ----------->RAV1(1)   --------->YAB1   --------->GLK1(1)           --------->MYB52(1) ---YAB1     <------NtERF2 --------->ATHB12         <---------ARR14(2)         --------->DOF5.7(2) ---WOX13(1)------>NtERF2 <------ZmHOX2a(2)         --------->ARR14(2) --------->AHL20(2) <----------   atatttttttacggtgccacattatgcgatcatttgaaacataataatatgtccgatctccataacttaataaaaaaatcagttaacgcaacaattgcct  11125900                                        <---------ARR11(3)      <---------ICU4                                        <-----------ARR10      --------->AHL20(2)                                ------>MYB46(1)  <------ZmHOX2a(2)     <---------ZAT14                                ------>MYB83   --------->At4g35610  <---------At5g28300                              <---------MYB59  <---------At4g35610 <-----------GT1                  --------->TOE1(3)     --------->GLK1(2)     <---------AHL20(1)                  --------->TOE2(3)     --------->ARR14(2)    --------->AHL20(1)                ------->TEIL------->TEIL<---------ARR14(2)    <---------ARR11(3)                   --            --------------->AtSPL8      --------->ARR11(3)    --------->ARR11(3)             -------- --CBF      <---------------AtSPL8     <---------GLK1(2)----------->GT1--------->ZAT14       <-------   aaggcataacctattttgtaccttaaactgaacctaatcgagaatcttcagatcaaaccagaaaaatatttactgtagtcaagttcaagttcaaacttgt  11126000             --------->AHL20(1)             --------->AHL20(2)                                            <------------CBF      <---             <---------AHL20(2)                ---------->DOF2          <---------MYB59       <------          --------->YAB1                   ----------->GT1          ----------->HVH21        <------NtERF2 --------->AHL20(2)                     --------->MYB52(1)       --------->ARR14(2)         ------>NtERF2 ------->TOE2(3)                  ---------->DOF2                <---------ARR11(3)        <---------DEAR3(1) ------->AtSPL8   <---------AHL20(2)--------->ANAC58             --------->GLK1(2)         --------->DEAR3(1) --------AtSPL8   --------->AHL20(2)--------->ANAC58             <-----------ARR10         <---------ANAC46   acattaattcaaaaataaaataaaatcgagttgaatcaaagcaaaccgataaaccgagttgaaccaaaatctgaccgaattgaacttgaaacggcgtcgt  11126100                                                                                --------->ARR14(2)                                                                                ------->TEIL                                                                                --------->GLK1(2)                                                                                <---------ARR14(2)                    --------->MYB52(1)                                          <-----------ARR10                   --------->TOE1(2)                                            <---------ARR11(1)                  <---------MYB52(2)                                           <---------CCA1(2)         <---------YAB1                                                        <---------ARR14(1)         <---------TOE1(3)                                                     <---------GLK1(2)         <---------TOE2(3)                                                --------->TOE2(2)      --------->AHL20(2)                                                  --------->TOE1(2) ---------CBF     --------->MYB46(3)                                   --------->ARR14(2) ---ANAC46     <----------ID1                  >>>>>>>>>TBF1        --------->AtMYB61   --------->YAB1   attggaaatttaagattagaacaaacgagtgagaagaacagagcaagaagaagaacagaacatgaaatcaccaaaacctccgaatctctctgataaatct  11126200                                                     <---------ETT(2)      --------->ANAC46                                                 <------------AtMYB77      ------->GAMYB                                          ------->GAMYB                    --------->DEAR3(1)                                          --------->DEAR3(1)               --------->DREB2C(2)                                <---------RAP2.6(3)  --------->ETT(2)     --------->DEAR3(2)                                <-----------HVH21<<<<<<<<<TAC1            --------->MYB46(3)                          <---------MYB52(1)--------->ANAC46              <---------MYB55(2)                         <---------SPL7   --------->RAP2.6(2)             <------------AtMYB77                  ----------->HVH21      --------->MYB46(3)              -------->P                 --------->ANAC58      --------->MYB52(1)   --------->ABI4(2)    <---------ATHB12                 --------->ANAC58      --------->ARR14(2)   <---------MYB46(3)  --------->GLK1(2)                 --------->ANAC46<------NtERF2  --------->ZAT2           ------>MYB83              --                <---------LBD16--------->RAP2.6(2)------->GAMYB          ------>MYB46(1)           --                --------->LBD16--------->ANAC46--------->MYB52(1)    --------->HSFB2a(2)    <--------         <---------ARR11(3)--------->SPL7--------->DEAR3(2)<---------AtMYB61   --------->WOX13(1)  --   --------->ANAC46  <---------ALFIN1  <---------ARR14(2)  --------->ALFIN1--------->RAP2.6(2)   <---   cttaaacccaatttcttccacggacaccgtaagccgtcacaaaaccgcccaactgtctacggtggtctcttctccaaccgccaatctatacccagagtct  11126300                                                                                            <------NtERF2                                                                                           ------>NtERF2                                                                                          --------->RRTF1(3)                                                                                          --------->RRTF1(2)                                                                                          --------->RAP2.3(3)                                                                                          --------->O2                                                                                          --------->ATERF1(2)                                                                                          --------->RAP2.3(2)                                                                                          <---------ATERF1(2)                                                                                          --------->DEAR3(1)                                                                                          --------->ANAC46                                                                                          --------->RAP2.6(2)                                                                                          --------->bZIP60(1)                                                                                         --------->RAP2.3(1)                                                                                         --------->RRTF1(1)                                                                                         --------->ERF1                                                                                        ------>NtERF2                                                                                        --------->LBD16                                                            --------->HSFB2a(2)         <---------ATERF1(1)                                                           ------>ZmHOX2a(2)           --------->ANAC46      --------->YAB1                                       ===========================HOX2a_HOX2a      ------->GAMYB                                        ==============================HOX2a_HOX2a      --------->TOE2(3)                                   ===============================HOX2a_HOX2a     --------->MYB46(3)                                   <------ZmHOX2a(2)            --------->DEAR3(1)     <---------MYB55(2)                       <-----------------AGL1                  <---------LBD16    -------->P                       <----------DOF2      ============================HOX2a_HOX2a    ------>MYB83                    <---------DAG2       --------->ARR14(2)         <xxxxxxxxxxxxxxxxsmallRNA(i)    ------>MYB46(1)              <---------ALFIN1        <---------ARR14(2)    ====================== ------->ANAC58                ------>MYB46(1)<---------LBD16              <---------ALFIN1<--------- ------->ANAC46              --------->DEAR3(1) --------->LBD16 --------->GLK1(1) ------>ZmHOX2a(1) -GLK1(2)                    --------->MYB46(3)--------->ANAC46--------->ARR14(2) =================== ------->ANAC58             --------->ANAC46------>ZmHOX2a(2)--------->LBD16  <---------ALFIN1 ------ALFIN1    ------->GAMYB ------>MYB83<---------GLK1(1)<---------HSFB2a(2)------>ZmHOX2a(1)   caccccaaccacaatccaactccctcgctcaccgaacacctttcgatctccgcaaatgggatccagaaacccatctccctcctccttctccgccgtcaca  11126400                   ------>NtERF2                  --------->DEAR3(1)                 <------NtERF2                 --------->RAP2.3(1)                 --------->ATERF1(1)                --------->ABI4(1)                <---------ATERF1(1)               <---------ALFIN1               --------->DEAR3(1)               --------->RAP2.3(2)               --------->ATERF1(2)               --------->RRTF1(3)               --------->RRTF1(2)               --------->DREB2C(2)               --------->RAP2.6(2)               --------->RAP2.3(3)               <---------ATERF1(2)              --------->ATERF1(1)              --------->RAP2.6(1)              --------->DEAR4(2)              --------->ERF1              --------->RRTF1(1)              --------->RAP2.3(1)              --------->ORA47(2)             <---------ATERF1(1)             --------->LBD16             ------>NtERF2             --------->ABI4(1)             <---------At4g35610             --------->At4g35610                                 --------->LBD16            --------->ANAC46                                    <---------ANAC58            --------->DEAR3(1)                                  <---------ANAC58           <---------LBD16                               --------->ANAC58         ------>ZmHOX2a(2)                               --------->ANAC46        --------->GLK1(1)                                --------->ANAC58      --------->ATHB12       <---------ARR11(3)                            ------>ZmHOX2a(1)        --------->MYB46(3)       --------->ARR11(3)                            <---------HSFB2a(2) --------->TOE2(3)    --------->At5g28300                      <---------ARR14(2) <---------ANAC55(2)             <---- <---------LBD16------>NtERF2                <---------GLK1(2)  --------->ANAC55(2)    --------->PCF2 ===============HOX2a_HOX2a                  --------->ARR14(2) <---------ANAC46       --------->PCF5 --HVH21<---------GLK1(1)             <---------ATHB12----------->HVH21  --------->TOE1(3)      ----- ===============HOX2a_HOX2a  <---------CCA1(2) <-------TEIL    <-----------------------TaNAC69(2)   ttccacggtgatctccgccgcctccgagcgtctatctccaatcgcgagattcgtcctcgacgcattccgtaagaaccgtaaccattggggtccctcagtg  11126500                            --------->ANAC58                            --------->ANAC58                         ----------->HVH21                        <-----------TGA1                        <-----------HVH21                       --------->TGA1a                       <---------O2                       --------->O2                       --------->bZIP60(2)                       --------->ANAC46                      --------->LBD16                                          <---------RAP2.6(2)                      ------>NtERF2                                            <---------ANAC46                      <------NtERF2                                            <------NtERF2                     --------->DEAR3(1)      ------>NtERF2                    <---------LBD16                    --------->ATERF1(1)     --------->DEAR3(1)             <-----------HVH21                   --------->LBD16         --------->ATERF1(1)          <---------ZAT14                   ------>NtERF2           <------NtERF2                --------->ZAT14<---------ARR11(3)                   <---------ATERF1(1)    ------>NtERF2                 <---------At4g35610  --------                  --------->DEAR3(1)     --------->DEAR3(1)          --------->At4g35610  <----------DOF2 -----ZAT18       --------->ANAC46       <---------DEAR3(1)    <---------DOF5.7(2)     --------->ARR11(3) ---->ZAT14      <---------LBD16    --------->ARR14(2)         --------->MYB52(1)<------NtERF2   gtctccgagctaaacaaactccgccgcgtcacaccaagtatcgtcgccgaggttttgaaactaggtaacgatgctgcagtcgcggctaagttctttcatt  11126600                                                                                               <-----                                                                                           <------ZmHOX2a(2)                                                                                          <---------ARR14(2)                                                                                          --------->ARR14(2)                                                                                        --------->LBD16                                                                                       <---------ANAC46                                                                                      <---------At4g35610                                                                                     <---------ANAC46            --------->DAG2                                                         <---------ZAT2  <------MYB83 ----------->GT1                     <---------ANAC58                --------->ZAT2  ----------->GT1                             <----------DOF2                   <---------ANAC58  <------MYB46(1)                  --------->At4g35610     --------->TOE2(3)    <---------ANAC46  --- <---------MYB46(3)                <---------At4g35610    ----------------->AGL1<---------ANAC58  <-- ->ATHB12  ---------->DOF2      <---------At4g35610<---------ANAC58 --------->MYB52(1)<---------LBD16   gggctggtaaacaaaaagggtataaacacgatttcgctgcttacaatgcttttgcttattgccttaatcgaaacggacattttcgtgctgcggatcagtt  11126700  Previous    Next  AGI:  At4g20740.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G06710.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G59900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40718.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11126162    to: 11128345    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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