Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->LBD16                                                                                  --- <------NtERF2                                                                                   <--- ------>NtERF2                                                                                ------- -------->RRTF1(2)                                                                        <---------ANAC58 -------->ANAC46                                                                          <xxxxxxxxxx -------->RAP2.6(2)                                                                       <---------ANAC46 -------->RAP2.3(2)                              <---------DAG2                           <---------ANAC58 -------->DEAR3(1)                            <-----------GT1                           <xxxxxxxxxxxx ------->RAP2.3(1)                   ------>ZmHOX2a(1)    <---------HSFB2a(2)        <-----------RAV1(1) --------LBD16  <---------REM1(2)  ----------->RAV1(2)    --------->HSFB2a(2)      xxxxxxxxxxxxxxxx>smallRNA(i) -HVH21      <---------ZAT6   ------>ZmHOX2a(1)  <----------DOF2           --------->WOX13(1)<xxxxxxx   cgccgcaaaatactagtctaaacgctcaactcctctctcctgtcttataaacttttttttttagaaaatgagatgatcaatcgaattttgttgtgtgtga  11100800                      --------->YAB1               --------->HSFB2a(2)               <---------HSFB2a(2)               <---------------AGL15             ---------->DOF2 ------>TOE2(3)===============================================================MADS_MADS ------bZIP60(1)      ----------->GT1 <---------AHL20(2) ---->HVH21    --------------->AGL15 --------->AHL20(2)                       --------->WOX13(1) xxxxxxxxxxxxxsmallRNA(si3)          <---------AHL20(1)         <----------DOF2 xxxxxxxxxxsmallRNA(i2)              <---------AHL20(2)  ------->TEIL      --------->YAB1 xxxxxxxxxxxxxxxxsmallRNA(fl3)<-----------GT1 --------->YAB1  --------------->AGL15                 <   cctcaaactgacaacttccagtaattgtaatattaccaattttttttatcaaaaagatgaacttcactttagagcaatagcaatccctcgagtctcccct  11100900                                                                                                    -                                                                                                    <                                                                      ------------>CBF              -                                                       --------->RVE1(1)   <---------ARR11(3)       <                           <---------At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <                   <---------TOE2(3)          --------->ANAC46 --------->ARR11(3)                   <                  --------->MYB52(1)          --------->ANAC58 <---------ARR11(3)                  <-               --------->TOE2(3)              --------->ANAC58<---------RVE1(1)             ------>ZmHOX2a(2)               --------->TOE1(3)            <---------ALFIN1  --------->GLK1(1)            <---------At4g35610      --------->GLK1(2) <-------TEIL        --------->ANAC46  <---------GLK1(1)           --------->ARR14(2) ---------->DOF2------>ZmHOX2a(1)           --------->ANAC58 <---------ARR11(3)           <---------AGP1 ---------AHL20(2)<---------DOF5.7(2)       --------->ANAC58 --------->ARR11(3)           <---------ARR14(2)   atataaagattccaactccttaacgattcatctaatgaaaaaacacacacaccaaaaatatcagatatctcaaacaatgtcttcagtttttggatctgtc  11101000                                                                      <---------ARR14(2)                                                                      ------->TEIL                                                                      --------->GLK1(2)                                                                      --------->ARR14(2)                                                                      <-----------ARR10                                                                      <---------ARR11(1)           --------->ATHB12                                          <---------CCA1(2)           --------->YAB1                                            <---------ARR14(1)           ---          --------->ICU4                                           --------->ANAC55(2)        -------          <---------YAB1                                           <---------ANAC58           ------- -------->ARR11(3)                                                 <---------ANAC55(2)        ------- ---------ARR11(3)                                           ------------>CBF             ----------- -------->ARR14(2)                                       --------->TOE2(3)              --------->At4g35610 ---------ARR14(2)             ------>ZmHOX2a(1)         <---------MYB59    ----------->RAV1(1)   --- ---------ARR11(1)          ------>ZmHOX2a(1)            --------->TOE1(3) --------->ANAC46 <-------- -----------ARR10  --------->AtLEC2 --------->ANAC46     <---------DAG2   --------->ZAT18<xxxxxxxxxxx --------CCA1(2)--------------->AtSPL3                 ------->TEIL<---------ANAC58     <---------At4g35610   catatcttggccatgatagccatacaactcctccttacacacagtgtttcatctctgaaccttaccaatgcgtatctgcaccacaaatgcagcaacactc  11101100                                                                                              <------                                                                                              -------                                                                                          <---------At4g35610                                                                                          --------->LBD16                                                                               ----------->TGA1  ----                                                                               ----------->HVH21 <xxx                                                                             <---------ANAC58-------- ------>ANAC58                   --------->ARR11(3)                          <---------ANAC58<------- -->ANAC58                --------->HSFB2a(2)                   --------->ATHB12------------>AtMYB77 -->ANAC46                <---------HSFB2a(2)                --------------->AGL15    <---------ARR14(2) -->ANAC58                --------->HSFC1(1)                <-----------------AGL1    --------->ARR14(2) >RAV1(1)           <---------ZAT18                       <---------ALFIN1   --------->ANAC55(2)----- ------>ANAC58      --------->ZAT18--------->TOE2(3)    <-----------HVH21  <-----------GT1--------->At4g35610 -ALFIN1   <-----------RAV1(2)   <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ANAC46 xxxxxxxxxxxxsmallRNA(i2) <---------HSFC1(1)    ------>ZmHOX2a(1)<------------CBF <---------ANAC46   aaggaaaatataagcaggggagcgcgttcgagaaaaatctcaactaagtcctcagtaccatcacctcgattggaaattttcgtgacggtttccgctacac  11101200                                                       ------>ZmHOX2a(1)                                                  --------->ATERF1(1)                                                 <---------ATERF1(1)                                                 ------>NtERF2                                                <---------DEAR3(1)                             <-----                                                --------->DEAR3(1)                         <---------                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       ------>NtERF2                                               <------NtERF2                              --------->RAP2.3(3)                                               --------->RAP2.3(1)                        --------->DEAR3(1)                                               --------->ATERF1(1)                        --------->RAP2.3(2)                                               ------>NtERF2                             --------->DEAR4(2)              ------------>CBF                --------->LBD16                            --------->RAP2.3(1)             ------>ZmHOX2a(2)                <---------ATERF1(1)                      --------->DEAR3(1)           --------->ARR11(3)                <---------DEAR3(1)                        <---------ALFIN1      --------->ALFIN1   <----------DOF2     <---------ANAC46                          --------->DREB2C(2)    <xxxxxxxxxxxxxxxxsmallRNA(i)             <------NtERF2                            --------->MYB46(3) ---ALFIN1 --------->ARR14(2)               <---------LBD16             <---------ALFIN1------>NtERF2 -->REM1(1)<---------ARR11(3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxx ----->DEAR3(1)   <---------ATHB12         <---------ANAC46            ------>NtERF2  --------->DEAR4(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------bZIP60(2)        --------->DEAR3(1)--------->ABI4(1) ->ZAT14   <---------ARR14(2)            <-----------HVH21          <---------ZAT18   --------->ORA47(2) --ZAT14  <------ZmHOX2a(1)             <-----------RAV1(1)         --------->ZAT18   --------->DEAR3(2) ---->ANAC46<------ZmHOX2a(2)           --------->ALFIN1          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   cgaagaaggtgaggatcccaataacgtctttgtcatgttccagtgtcgcggcgactcctactggtccaagtgccccccttgcattagcaccgccgtctct  11101300                                                                                --------->AHL20(2)                                                                           <---------MYB52(1)                                                                          <-------GAMYB                                                                         <---------MYB46(3)                                                                         ----------->GT1                                                                         <---------DEAR3(2)                                                                        <---------DEAR3(1)                                                                        <---------TOE2(2)                                                                     --------->ANAC58                                                                     =============MYC_MYB                                                                     --------->O2                                                                     --------->ANAC46                                                                     <---------O2                            --------->At4g35610                      --------->ANAC58                      --------->AHL20(2)                             <---------TGA1a                      <---------AHL20(2)     ----------->GT1         --------->TGA1a                 --------->AHL20(2)        <---------ANAC55(1)  --------->ZAT18 <---------AHL20(2)     <---------ICU4  <---------YAB1        <---------ANAC46   --------->At4g35610    --------->ICU4<---------YAB1          <-------TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------- ----LBD16   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ICU4  <---------ALFIN1        <---------CCA1(2) --HVH21    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ICU4<---------ZAT18 <---------ICU4------- xxxxxsmallRNA(se3)--------->YAB1     ----------->GT1   <---------YAB1<-----------HVH21<-----------HVH21   ggggtaattgtgacttcaatattataaattagcagtcatatagttacatgtaaaaattacgatgagcacacacgtcggttaattttttctgtcaaatctt  11101400                                    <---------WOX13(1)                 ------>ZmHOX2a(1)-------->HAHB4                 <---------YAB1   --------->ATHB12               ------>ZmHOX2a(2) --------->ICU4             --------->ARR11(3)  <---------YAB1             <---------ARR11(3)  <---------ATHB12            --------->YAB1   <---------AHL20(2)  <-----------RAV1(1)  <----------DOF2                  <---------WOX13(1)          <---------YAB1 -->TOE1(3)<---------ATHB12  --------->AHL20(2)   --------->MYB52(1)   ----------->GT1  --------->AHL20(2) -->TOE2(3)--------->ICU4--------->AHL20(2) <----------ID1      ---------->DOF2     --------->ICU4   aaatatgtgggcaatgatcctgatactttatataaatgattgaattgagacaaaactgatagacattaaaggctagttaaaaaatactgattaaacaatg  11101500                                                  <------ZmHOX2a(1)                                            <-------TEIL                                 ------->TEIL   <---------TOE1(2)                           <---------ARR14(2)   <---------TOE2(2)                           --------->ARR14(2)<---------ANAC46                           ------->TEIL   <---------GLK1(2)                       ------->TEIL      --------->At4g35610                            >>>>>>>>>>>>>                       <-------TEIL  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->AHL20(2)                   <---------------AtSPL3<---------At4g35610      --------->MYB52(1)  ----------->HVH21                   <---------------AtSPL8<---------ZAT2     --------->ANAC46 --------->YAB1                   --------------->AtSPL8--------->ZAT2     --------->ANAC58<---------ATHB12     <---                <---------AHL20(2)  ----------->HVH21       --------->ANAC58<---------ATHB51  <------   caatattgttcttgatatatatatgtacgtatatgtatgtgacagcttcgtaggagatgtccaagaaataagggagcaataatatggtatgaccaatgtc  11101600                  <---------ANAC58       --------->ARR11(3)       <---------ARR11(3)      --------->CCA1(1)                                                                   <---------MYB46(3)      --------->GLK1(1)                                                                  ============      <---------GLK1(1)                                                                 =============      <---------CCA1(1)                                                                 <-------GAMYB      <---------RVE1(1)                                                                <---------MYB46(3)      --------->RVE1(1)                                                              --------->LBD16     --------->ARR11(3)       <---------TOE2(3)                                    <---------LBD16     <---------ARR11(3)------>ZmHOX2a(1)                            --------->ANAC46<---------LBD16  <---------TOE2(3) ------>NtERF2                                ------->GAMYB     ------>ZmHOX2a(2) ---------->DOF2  <---------ANAC58       --------->YAB1          ==================================== >>>>LFY      --------->At4g35610       <---------YAB1         ------>MYB46(1)  --------->ATHB12 -------DOF2  <---------At4g35610   <---------GLK1(2)          ------>MYB83    ----------->HVH21 ---ARR11(3)  <-------GAMYB   <---------YAB1                   -------->P  <---------YAB1<--------P   ttttaaagatatcttcagttgcctccttcaataagatagattatgagaacgatttctatttgtccaacccaaacaacatgagtgatcgggggttgttcaa  11101700  Previous    Next  AGI:  At4g20710.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20650.1); similar to unknown protein [Arabidopsis lyrata] (GB:AAN46206.1); contains InterPro domain Protein of unknown function DUF26 (InterPro:IPR002902); contains InterPro domain Protein of unknown function DUF1204 (InterPro:IPR009596) Range:  from: 11101235    to: 11103325    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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