Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->At4g35610                      --------->ZAT2                   <---------At4g35610                   --------->At4g35610                  ------->GAMYB      ------>ZmHOX2a(1)      --------->LBD16 <---------ZAT2                           --------->ALFIN1     <---------LBD16  <---------At4g35610                      <---------AtMYB61    ----------->RAV1(2)                                     --------->ALFIN1    =======================RAV                           --------->ALFIN1 --->ANAC58      --------->MYB46(3)        --------->ANAC58 <---------AtMYB61 --->ANAC58    ----------->RAV1(1)         --------->ANAC58<------ZmHOX2a(1) -->SPL7    --------->ANAC58        <----------DOF2     <------ZmHOX2a(1)          <---------TOE2(3) --ALFIN1   --------->ANAC58      --------->At4g35610<-----------RAV1(2)      --------->ATHB12 -SPL7--------->HSFB2a(2)--------->At4g35610   <---------GLK1(2)       ----------->HVH21 --HVH21    --------->ANAC46      <---------ZAT2--------->GLK1(2)    ------>ZmHOX2a(1)   gccaattcctggaccagcaacagcagctgcagagccagctttagcacgagattcttcaggaggaggtggtccttcgacagtcattgagataacttcttca  11023400                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                        --------->ANAC46                                                                                  --------->HSFB2a(1)                               ------>ZmHOX2a(2)                                  --------->HSFC1(2)                             <---------ARR11(3)                               --------->ANAC58                             <---------ARR14(2)                               <---------ANAC55(2)                        <---------DEAR3(1)                               <---------HSFB2a(1)                     <---------SPL7                                      <---------HSFC1(2)                  ------>MYB83<------ZmHOX2a(2)                          --------->HSFC1(2)                  ------>MYB46(1)<---------REM1(2)               <---------MYB46(3)    ------>ZmHOX2a(1)                  <------------------SPL14                     <---------At4g35610<---------HSFC1(2)          --------->ANAC46   --------->ARR11(3)   ------>ZmHOX2a(2)      --------->HSFB2a(1)        --------->ZAT6 --------->SPL7           --------->ARR11(3)       --------->At4g35610      ---      ----------->RAV1(1)    --------->ARR14(2) <---------ARR11(3)       <---------At4g35610 --------   --------->ANAC58 <---------ANAC58--------->ANAC58           <---------ZAT2 --------->ANAC55(2) ---   --------->ANAC58 <---------ANAC46--------->ANAC46        <---------MYB52(1)--------->ANAC46   ----   --------->ANAC46 <---------ANAC58--------->ANAC58       <----------DOF2    --------->ANAC58-------   cctctaagcaacactaaacctagcgtacggcgatcttcacgctcttcgttgatcttcttccctttagctggtggaagcttacgaaactcctcgcaatcgc  11023500                         --------->ANAC46                         --------->ANAC58                         ------->GAMYB                         --------->ANAC58                                      <---------MYB52(1)                   <-----------HVH21                                          ------>ZmHOX2a(1)   <---------TOE1(1) <---------WRKY12                 <---------ANAC58 --------->ANAC58   <---------TOE2(1)--------->WRKY18(1)               <---------ANAC58 --------->ANAC58 --->NtERF2   ----------->HVH21              --------->ZAT2      <-----------HVH21 ->MYB46(3) --------->ANAC55(2)              <---------ZAT2   --------->ARR14(2) ------>HSFB2a(2)  --------->At5g28300       <---------At4g35610=====================HOX2a_HOX2a ----->DEAR3(1)  <---------ANAC46------->TEIL--------->At4g35610------>ZmHOX2a(2) >GAMYB  <-------TEIL<---------WRKY38(1)   ------->GAMYB      <---------ARR14(2)          --------->At4g35610   cgagaacgaggttcatgtgacggtcaaacgccatgaacttcccaacgagctgtcttccgtcttggatcgtcactcgcatcctgtagttgatgaactgaag  11023600                                                                      <------NtERF2                                                                      --------->RAP2.3(1)                                                                     <---------ATERF1(1)                                                                     ------>NtERF2                                                                     <---------RAP2.3(1)                                                                     <---------ERF1                                                                     <---------DEAR4(2)                                                                     <---------ORA47(2)                                                                    --------->ATERF1(2)                                                                    <---------RAP2.3(3)                                                                    <---------RAP2.3(2)                                                                    <---------ATERF1(2)                                                                    --------->DEAR3(1)                                                                    <---------DEAR3(1)                                                                   <---------ABI4(1)                                                                   <---------LBD16                                                                   <---------At4g35610                                                                   --------->ATERF1(1)                                                               --------->GLK1(2)                                                               --------->ARR14(1)                                                               --------->CCA1(2)                                                              <---------ARR14(2)                                                              --------->ARR11(1)                                                              <---------GLK1(2)                                                              --------->ARR14(2)              ------>ZmHOX2a(2)                                                       --------->ANAC58                    <------ZmHOX2a(1)                                                --------->ANAC46  <---------RAP2.3(1)   <------NtERF2                                                --------->ANAC58 <---------DEAR3(1)    --------->LBD16                                                --------->ANAC58<-------TEIL          <---------ANAC46                                            --------->ZAT6  ----------->ARR10        <---------LBD16     <-----------GT1                   --------->YAB1  --------->ANAC58   --------->ARR14(2)--------- --------------------->WRI1            ----------->GT1 --------->ANAC46   <---------ARR14(2)<--------   catctttgaactcttcgacatcgacattctcgccgattgaatagtaacactcgctacaagcagagattcggcggcgaaaccgagtatgccggaggatcga  11023700                                                                             --------->HSFB2a(1)                                                                             <---------HSFC1(2)                                                                             <---------HSFB2a(1)                                                                             --------->HSFC1(2)                                                                        ----------->GT1                                                                <---------LBD16                                           <---------ANAC46    *TSS    --------->ALFIN1                                          <---------LBD16     <---------ARR14(2)                                         --------->ALFIN1     --------->GLK1(2)            <---------YAB1 >ARR14(2)                        ----------------->AGL1      --------->ARR14(2)         <-----------TBP -ARR14(2)                      <----------ID1   --------->ALFIN1<---------HSFB2a(2) ----------->GT1   aatcgagcttagggtttcaaaaaactaaatcgagaggccaaaattgggggggtttggctgtgcaaatcgggaagtgggaaatttctagggtttataaatg  11023800                                 <---------PCF2          ------------>CBF                            <---------ICU4               <------NtERF2                           <---------YAB1             --------->At4g35610                           --------->ICU4  <------------CBF                             --------->MYB52(2)                         --------->YAB1  --------->ARR11(3)                           <---------MYB52(1)                      <----------DOF2   --------->YAB1<---------At4g35610    --------->REM1(1)   aatacactcttgtttatgggcttactttcattatgggcccaaacatattggacttgggctgcaattagttgaataggctacaatatttgttagtttgagg  11023900                                                                                                   <-                                                                         ------------------------>ANAC81                               --------->ARR14(2)           --------->MYB46(3)              ---------                    <---------AHL20(2)                 <---------HSFB2a(2)                  ---------       --------->ZAT6          <---------ARR14(2)     <---------LBD16---------->DOF2        <--------   ctccaagtttcactaagcttattttatggagcaaatcagcaaatgtcaaagtttaatcgggaacaaatgtgtaaagttcaacaagattaaaacaaatctg  11024000                                              --------->LBD16                                              ------>ZmHOX2a(1)                                     <-------MYC4                                     ------->MYC4                                     ------->MYC2                                                   <                                     <-------MYC2                             --------->GLK1(1)     -                                     <-------MYC3                            <---------ARR14(2)     -                <---------AHL20(1)   ------->MYC3                   <-------TEIL               <-----                --------->ARR11(3)  <---------O2                  <---------ZAT18          ---------- ------TEIL     --------->AHL20(1)  --------->O2                 <---------ANAC58          ========== >GLK1(2)<---------TOE2(3)          --------->TGA1a              <---------ANAC46         --------->AtMYB61 >ARR14(2) <------ZmHOX2a(1)        <---------ANAC55(2)          <---------ANAC58      <------ZmHOX2a(1) -ARR14(2)----------->GT1           <---------TGA1a    <---------AtLEC2      --------->ARR14(2)<-----   atacattgaataaggaaatattttgttattcaaaacacacgtgtattcctgaacttggcatgaactagcgtgcatcagggatatgttcaggaccaaagct  11024100                               --------->TGA2(2)                              <-----------TGA1                              <-----------HVH21                             --------->bZIP60(2)                             --------->TGA1a                             <---------O2                             --------->ANAC58                             --------->ANAC46 ---------ZAT14              --------->O2 -------->ZAT18              ===========================bZIP_DOF                                ----- -------->ZAT14              --------->ANAC58                                                -------- ----ANAC58               --------->ZAT18                                                    -------- >DOF2                    <---------ZAT18        <---------ANAC58                           <-------- ======================================bZIP_DOF  <---------ANAC58                           --------- ----ANAC58               <---------WRKY38(1)<----------DOF2                               -------->P   tgtgctctgttcaagagaactcttggagtccacgtcatgtctccctcctttccttgagttctcagttaagagacactcttgtagttcattagcaacctgg  11024200              --------->LBD16             --------->HSFB2a(2)      <------MYB83                                                                      <-------TEIL  <---------ARR14(2)                                                               <---------At5g28300 ------>HVH21<---------ANAC46  --------->ANAC58                                   <-----------GT1 ->TOE2(2)   <---------HSFB2a(2)   ----------->HVH21                           --------->YAB1       - ->TOE1(2)<---------SPL7       --------->ANAC58        --------->HSFC1(2)      <---------ICU4      <- -ZAT2<------MYB46(1)       ----------->HVH21          --------->HSFB2a(1)    --------->ICU4      <-- -->RAV1(2) <---------LBD16 ----------->TGA1           <---------HSFB2a(1)  --------->YAB1        ---   gacatatttggtcttccggatgaagatggactgacgcatgacattgctaactcaagagccttccacaatgaactagagtcataatcaccgttcatacttg  11024300  Previous    Next  AGI:  At4g20440.1    Description:  SMB. similar to small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative [Arabidopsis thaliana] (TAIR:AT5G44500.1); similar to small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative [Arabidopsis thaliana] (TAIR:AT5G44500.2); similar to unknown [Populus trichocarpa] (GB:ABK93409.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro Range:  from: 11022153    to: 11023763    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g20450.1    Description:  leucine-rich repeat protein kinase, putative. similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G29000.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G28960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45750.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); Range:  from: 11024065    to: 11029019    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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