Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->ARR14(2)                   <----------TaMYB80                 --------->YAB1                <---------YAB1 ----------->GT1                             <-----------RAV1(1)            <----------DOF2 <---------ARR14(2)                  ----------->GT1  <-------TEIL     ---         <---------ARR11(3) --------->ARR14(2)       <---------ZAT6      <---------At5g28300      <--         --------->ARR11(3)<---------CCA1(2)<---------ZAT6   <------ZmHOX2a(1)<---------MYB46(3) <---     ---------->DOF2<---------ARR14(2)    ----------->GT1---------->DOF2<-----------GT1         <----   aacaatataaagctctttatcatattcgcatatatgtaaaatggtagtgaaattagtgtaaaaggacagtgattttactgtggttcatgttcttcaggtc  10989600      --------->At4g35610      <---------At4g35610     ------->TEIL           <---------TOE2(3)                                ------>MYB46(1)        - <---------TOE2(3)         --------->MYB52(1)                              --------->AtMYB61        < ------>DOF5.7(2)      --------->ZAT6                       --------->ARR11(3)                     <- -------MYB52(1)   <---------ANAC58          ---------->DOF2<---------GLK1(2)------>MYB83     <------ ----GAMYB         <---------ANAC58    <-------TEIL----------->GT1         <---------MYB59    <------ -----MYB46(3)<----------DOF2         --------->CCA1(2)     <---------ARR11(3)          <-----------GT1   gttaatgaagctgaagctttggcttactctaacgaagaagattcaagaaaagatggtgacaagatttttcacagagaccaaactcgagtttcacttactt  10989700                                         <---------ANAC58                         --------->RVE1(1)                        --------->ARR11(3)   <---------ANAC58                        --------->GLK1(2)<---------ANAC58                        <---------ARR11(3)   <---------ANAC58         <---------HSFB2a(2)       --------->GLK1(2) ----->NtERF2     --------->LBD16 <---------ARR14(2)                                 --------->At5g28300 ---------RAP2.6(3)    --------->RVE1(1)<---------STY1(2)                 <---------ANAC46 --------ANAC46  <---------ANAC55(2)    --------->STY1(2)          <-----------GT1  ----------->GT1 ---ANAC58       ----------->GT1  <---------GLK1(2)      --------->ZAT6  ---------->ID1 ---ANAC58 ---------->DOF2        --------->ARR14(2)   <<<<<<<<<<<<<<<<<LFY     <---------YAB1    <--   gccgtctagttcccaaagtccgtaaaaatctcttcagattctagcttgcttccctaataacactggttttatcttgtcgtttatgactgtaaaaaacgtt  10989800          --------->ALFIN1        <---------ANAC58        --------->ANAC55(2)        <---------ANAC55(2)        <---------ANAC55(1)        --------->O2        --------->TGA1a        <---------TGA1a        <---------bZIP60(2)        <---------ANAC46        <---------ANAC58                                                         <---------AHL20(2)        <---------O2    --------->ANAC46                                        --------->AHL20(2)       <-----------------------TaNAC69(2)                                    <------ZmHOX2a(1)     ----------->HVH21  --------->ANAC58                                     ----------->GT1       <-     ----------->TGA1   --------->ANAC58              <------ZmHOX2a(1)  <---------ARR14(2)        -- -------YAB1 ----------->GT1------>NtERF2            <----------ID1      --------->ARR14(2)        <-   acgatttgtgacgtgtggaatataaaacgccacgatttgtagttgccgaaacatgaggacaaaaaacttgcaacggataggattaaatatgagcccttca  10989900                                                                            ------>ZmHOX2a(1)           <-----------GT1                                         <-----------ARR10         <---------AHL20(2)                                        <---------ARR14(2)    <---------AHL20(1)                                             <---------ARR11(1)    <---------AHL20(2)                                             --------->ARR11(3)    --------->AHL20(2)                                             <---------ARR11(3) --------AHL20(2)                             ------------>CBF    <---------CCA1(2)   <---------AHL20(2) ------->AHL20(2)          ---------->DOF2  <---------ZAT14    *TSS--------->ARR14(2) --------->AHL20(2) --------AHL20(1)  <<<<<<<<<<GT-3b          --------->ZAT14    --------->LBD16       --------->AHL20(2)   ttttattttattttttcttatttttcttctaaagagataacatcactatacaatctcactctatccccaaatcttctccttctccaaaaaaatttcaaac  10990000                                                                  <----------DOF2                                                                 <---------MYB52(1)                                                             <---------At4g35610                                                             <---------ZAT2                                                           <---------ALFIN1                                                           <-----------RAV1(2)                      <---------At4g35610                ------>NtERF2                      --------->At4g35610              --------->At4g35610                      --------->ZAT14                  <---------At4g35610           <---------GLK1(1)          <---------GLK1(1)                           <---------RAP2.3(1)        <---------HSFB2a(2)      --------->HSFB2a(2)                            <---------RAP2.6(2)         --------->HSFB2a(2)      <---------HSFB2a(2)                           --------->RAP2.6(3)        ------>ZmHOX2a(1)  <---------GLK1(2)------>ZmHOX2a(1)              <---------ARR14(2)        ------>ZmHOX2a(1)    ----   cctagcttctcgatttctctcctctgctctccaattccatcttcccatggcgatttcggctccagccgcttgttcttcctcctctagaattctctgttcc  10990100                                      --------->AtMYB61                                   <---------ALFIN1                                  ----------------->AGL1                           ------>NtERF2                                                            -                           --------->LBD16                                                        ===                          --------->ANAC46                                                        ---                          --------->ANAC58                                                        ---                          --------->ANAC58                              ------>ZmHOX2a(1)         ---        ------>ZmHOX2a(1)<---------LBD16                     --------->ZAT6                <---------ICU4   ------>ZmHOX2a(1)  <-----------HVH21                 --------->TOE1(3)      ------>ZmHOX2a(1) ---- -->ZmHOX2a(1)------>ZmHOX2a(1)   <-----------------AGL1--------->TOE2(3)  ------>ZmHOX2a(1)     <---   tactcctctccttctccttctctctgtcccgccatttccacctctggtaaactcaaaaccctaactctctcttcctccttcctcccttcttactcattaa  10990200                                                   <-------PIF5                                               ------>NtERF2                                              --------->DEAR3(1)                                             --------->RAP2.3(1)                                             --------->DEAR4(2)                                             <------NtERF2                                             --------->ATERF1(1)                                            ------>NtERF2        <---------At4g35610                 <---------ATERF1(1)    --------->DEAR3(1)                     <---------DEAR3(1)    <---------ALFIN1                       --------->ANAC46    --------->AtMYB61                     <------NtERF2   --------->ZAT2       <-----------HVH21 --------->ATERF1(1) --------->DEAR3(1)    ===========================================bZIP_DOF <---------ALFIN1      --------->TGA1a   <---------ATERF1(1)                                        - --------->AtMYB61     <---------O2     --------->SPL7        --------->HSFB2a(2)                  <- -------->MYB46(3)     --------->O2   <---------SPL7     --------->HSFB2a(1)                   ------ ================================MYC_MYB<---------DEAR3(1)    <---------HSFB2a(2)            -------- ------>AtMYB61        <---------TGA1a--------->ORA47(1) --------->HSFC1(2)                  -------- ---->GAMYB      <<<<<<<<<GATA-3      <-----------HVH21  <---------HSFB2a(1)                 -------- ------>ANAC46   <<<<<<<<<GATA-2     --------->DEAR3(1)  <---------HSFC1(2)                  <------- ----->MYB46(3)  <<<<<<<<<GATA-1   <---------At5g28300 ---------->DOF2                       <------- ------MYB55(2)  <<<<<<<<<GATA-4------>ZmHOX2a(1)  ------->PIF5    <------ZmHOX2a(1)       --------->ARR14(2)   ccaccacctccgcttctcaatccactcgtcgctccttcaccgtccgcgccgctcgtggaaagttcgagaggaagaagcctcatgtcaacatcggaaccat  10990300       <---------WRKY18(1)       >>>>>>>>>>WRKY6       >>>>>>>>>>WRKY11            <-----------ARR10      --------->WRKY45            --------->ZAT2      --------->WRKY12            <---------ZAT2      --------->WRKY38(1)         --------->At4g35610   --------->ICU4                 <---------At4g35610 -------->WRKY18(1)            --------->LBD16                                      <----------ID1 ----------HVH21              ------->GAMYB                                         <---------TOE2(1) --->MYB52(1)                 --------->ANAC46                                     --------->SPL7 ->HSFC1(2)                  --------->MYB46(3)                                  --------->TOE1(2)  - ->MYB46(3)                 <---------At5g28300                                --------->DAG2      <- ->HSFB2a(1)            --------->TOE2(3)                            --------->DEAR3(1)     <-------- --HSFC1(2)             <----------DOF2   <---------ICU4     <---------MYB46(3)<---------------AtSPL8 --HSFB2a(1)          xxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------MYB52(1) ---------->DOF2    <---   cggtcatgttgaccatgggaaaactactttaaccgcagctctaaccatggctctcgcttccattggttccagcgtcgctaaaaagtacgacgagattgac  10990400         <------ZmHOX2a(1)      <------NtERF2     --------->LBD16    --------->DEAR3(1)    <---------ANAC46   <------NtERF2   --------->ATERF1(1)             <---------ALFIN1                      --------->ZAT14   <---------LBD16                 --------->ZAT6                        <---------ZAT18          ---  <---------RAP2.3(1)         --------->ANAC58                     <-----------TGA1   <---------WOX13(1)  ------>NtERF2           --------->YAB1                        <---------ARR14(2)   <---------ANAC58 <---------DEAR3(1)    <---------bZIP60(1)  <-----------RAV1(1) --------->GLK1(2)    <---------ANAC58 ----->NtERF2          --------->bZIP60(1)  <---------ZAT6      --------->ARR14(2) <---------YAB1 --- --------ATERF1(1) <-------PIF5 --------->YAB1   <---------ANAC58  <-----------HVH21--------->ATHB12 -WOX13(1)     <---------ZAT2 --------->ANAC58   <---------ANAC58 --------->YAB1<---------O2  <------ ------At4g35610   ------->PIF5<---------ATHB12 <---------------AtSPL8   <---------ZAT14    ------>ZmHOX2a(1)   gctgcgccggaggagagagctcgtggtatcacaatcaacactgctactgttgagtacgagactgagaatcgtcactacgctcacgttgattgtcctggtc  10990500  Previous    Next  AGI:  At4g20350.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO49586.1) Range:  from: 10988405    to: 10989851    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g20360.1    Description:  AtRABE1b/AtRab8D (Arabidopsis Rab GTPase homolog E1b); translation elongation factor. Identical to Elongation factor Tu, chloroplast precursor (TUFA) [Arabidopsis Thaliana] (GB:P17745); similar to elongation factor Tu, putative / EF-Tu, putative [Arabidopsis thaliana] (TAIR:AT4G02930.1); similar to Elongation factor Tu, chloroplast precursor (EF-Tu) (GB:Q43467); similar to Elongation factor Tu, chloroplast precursor (EF-Tu) (GB:P46280); similar to chloroplast elongation factor TuB (EF-TuB) [Nicotiana sylvestris] (GB:BAA01975.1); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Translation elo Range:  from: 10989963    to: 10991720    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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