Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  ----------->GT1                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            --------->YAB1                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->WOX13(1)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ------->ANAC46         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)---------->DOF2----------->GT1 ----->ANAC46 <---------YAB1                <---------WOX13(1) --------->DAG2  <---------GLK1(1) ->AHL20(2) <---------ICU4       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---------->DOF2  <---------WOX13(1) --AHL20(2)<---------ATHB12    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   cacaacaccatcaatcatcatatatagaatagagatggatttttggattgatagaaacaaatgaaaaggtaaaaaagatggatatttggattgatagaaa  10961200                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                <----------ID1                       ---------->DOF2           ---------->DOF2 --------->AHL20(2)        <---------ZAT14>>>>>>>>>TBF1      ----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     >>>>>>>>>TBF1     --------->DAG2--------->ANAC58               ----------->GT1>>>>>>>>>TBF1<---------ATHB12   ---------->DOF2 --------->ANAC58           ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   gaatgaaaaggtaaaaaggagacgaaagattatatatggaatagagagaaaagagtaaagagaagaagaagaagaaacaaatcaaaaattttgtttttgt  10961300                               --------->AHL20(2)                              --------->AHL20(2)                        ----------->GT1               <---------AHL20(2)              <---------AHL20(1)       ------>ZmHOX2a(2)       <-------GAMYB   >>>>>>>>>RAP2.2              <---------AHL20(2)      <---------At4g35610     <-----------RAV1(1)          <---------TOE2(3)              --------->AHL20(1)      --------->At4g35610  <-----------GT1   <---------ARR11(3)              --------->AHL20(2)     <---------AGP1 <---------RVE1(1)        --------->ARR11(3)             --------->AHL20(2)<---------AHL20(2)  <---------ARR11(3)       --------->RVE1(1)             <---------AHL20(2)--------->AHL20(1)  <---------GLK1(2)        --------->CCA1(1)    <---       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        --------->ARR11(3) ----------->GT1   <---------YAB1   tgaattgagagaaaaataaattgaagatgaaaaaaaattgatctgagaaattagatttttttttctgttgagaagaaaatatctaaaattgttatggatt  10961400                                                           <---------YAB1                                                         <-----------GT1                            ----------->GT1     <---------ANAC58                      --------->AHL20(2)                      <---------YAB1            <---------ANAC58                 >>>>>>>>>GATA-1 --------GT1     ----------->GT1              <-----------GT1 <---------YAB1   ----------->GT1   tacatctaacatagagattgggttataaataagtgaaaaactctagttttacttgttttttactattattctgaattgaaatagataaataaacatatgt  10961500                                            ----------->GT1                                            <---------ANAC46                                         --------->ALFIN1                                       <---------ANAC46                           <-----------GT1                                      --------->ALFIN1                       <---------AHL20(2)                                      <---------DEAR3(1)                     --------->AHL20(2)                                   --------->ALFIN1                     --------->TOE2(3)                               <---------At4g35610   <---------AHL20(2)----------->GT1                               <---------ZAT2    ----------->GT1       --------->ANAC55(2)                               --------->ZAT2   <---------YAB1       <-----------GT1           <-----        --------->ZAT18        --------->At4g35610   --------->AHL20(2)<---------ANAC55(2)   <-------     --------->DAG2     --------->ATHB12 <---------AtMYB61        <---------YAB1 --------->AHL20(2) <   tttttataagggggctaactagagaatgtttgaagctgagggggtggagtaagattaaaatactggttatgttacgttataaattaactcatcggcttta  10961600                                                                                       --------->GLK1(2)                                                                                <------ZmHOX2a(1)                                                                            <-------TEIL                                                                          <---------ARR14(2)                                                            <---------DEAR3(1)  =====================     --------->TOE1(3)                                     --------->RAP2.6(3)<---------TOE2(3)     --------->TOE2(3)                                     <---------ORA47(1)<-----------RAV1(2)     --------->YAB1                         --------->MYB52(1)          ----------->ARR10  --------->LBD16  <-----------GT1              --------->GLK1(2)           --------->SPL7 --------->ARR14(2)      <-- ----AHL20(2)           *TSS   <---------ARR11(3)         <------ZmHOX2a(1)--------->GLK1(2)     <--- ---DOF2 --------->GLK1(2)--------->YAB1 <<<<<<<<<<<<<<<<<LFY       --------->YAB1     <---------ARR14(2) ---------AHL20(2) ---------->DOF2       >>>>>>>>>>>>>>>>>LFY <------NtERF2--------->CCA1(2)     ----   atttaaaccataatcttgtaagaaagaatcaaaaatctgaataaaccaatggaaatttcaggacggcgaatgagaagattcaggatgagattccgaagag  10961700             <---------ANAC46            <------NtERF2            --------->ATERF1(1)           <---------DEAR4(2)           <---------ERF1           ------>NtERF2           <---------ATERF1(1)           <---------RAP2.3(1)          --------->DEAR3(1)          <---------RAP2.3(2)          <---------RAP2.3(3)          <---------DEAR3(1)          --------->ATERF1(2)          <---------ATERF1(2)         <---------------------WRI1         <---------ABI4(1)         --------->ATERF1(1)        <---------ATERF1(1)       <---------DEAR3(1)       --------->DEAR3(1)       <---------ATERF1(2)      --------->DEAR3(2)   ----------->HVH21                                                                                <  --------->AtMYB61                   <-----------RAV1(1)                 ------->GAMYB             - --------->At4g35610                --------->O2           --------->ARR11(3)         <---------ANAC46 --------->ANAC46                   <---------ANAC46       <---------ARR11(3)         <---------ANAC58 ====HOX2a_HOX2a                --------->HSFB2a(1)        --------->GLK1(2)          <---------ANAC58 ----ZmHOX2a(2)                 <---------HSFC1(2)        <---------GLK1(2) ------->TEIL<---------MYB52(1) ------ARR11(3)                 <---------HSFB2a(1)  --------->TOE2(3)   --------->MYB46(3)         < ----->ARR11(3)                 --------->HSFC1(2)  <---------bZIP60(1)  <---------MYB52(2)  <------ZmHOX2a(1)   atcacctcaccggcggcgagaacattgaaaacgaagcctcgtgttgctattgtgacctcaaaatctcgaatttcaacgaacccatcttccgtttaggacg  10961800                                                      <----------DOF2                                                  --------->ATERF1(1)                                                  <------NtERF2                                                 <---------ATERF1(1)    --------->DEAR3(1)                                                 <-----------HVH21 <-----------HVH21                                                 ------>NtERF2     <-----------TGA1                                                <---------DEAR3(1)--------->ANAC46                                                --------->DEAR3(1)--------->O2                                             <---------DEAR3(1)   --------->bZIP60(2)                                          <---------ARR14(2)     ------>ZmHOX2a(1)       --------->LBD16                    <---------GLK1(2)    ==============================HOX2a_HOX2a     <---------LBD16                      --------->ARR14(2)   ------>ZmHOX2a(2) ---------GLK1(2)                         --------->ARR11(1) --------->ARR14(2) -------->ARR14(2)                       <------ZmHOX2a(1)   <---------ARR14(2)                 ----- ---------ARR14(2)                       =============================HOX2a_HOX2a     ------>ZmHOX2a(1)   acgattctccggagttttgaaagtctggttctcaatcggactaggattcggcgtcgcttctctgatcctcgtcaccgtcttccttctccttcagtttcac  10961900                                                               <---------ZAT18                                                         --------->At5g28300                                                       --------->ANAC46                                         <---------ARR14(2)    --------->ZAT18                                         --------->ARR14(2)  <---------At4g35610      ----------->GT1                                         <---------GLK1(2)   --------->At4g35610   --------->ZAT2                                   --------->ARR14(2)  --------->ANAC58            <---------ZAT2                                <---------ANAC46       --------->ANAC58            <---------At4g35610                 <---------ATHB12  <---------ARR14(2) <---------LBD16        <---------ARR11(3)     <----------DOF2          ------>NtERF2           --------->LBD16        <-----------ARR10 ---->ZAT6 <-----------GT1    --------->LBD16     ------>ZmHOX2a(1)          --------->ARR11(3)   tctaaccctttattctccaatcgtctcacttccgccgtatttggattctctccttccacggtaagctcacttaaacaaaaatctcagcttgtgaaaattc  10962000                                     <---------ICU4                                    --------->ICU4              <---------ZAT14                                    <---------YAB1             >>>>>>>>>>>>>>>>>LFY                                  <--------HAHB4             ---------->ARF1                                  --------->YAB1         <---------ANAC58                           <---------ANAC58              <---------ANAC58              <----------DOF2    <---------YAB1         ------->TEIL           <---------AHL20(2)  <---------CCA1(2) <---------ANAC46                                <---   --------->DAG2          <---------ANAC58      <---------ANAC58    <-----------HVH21      ------->TEIL  ---------->DOF2          <---------ANAC46      <---------ANAC58<---------ALFIN1   <---------At4g35610   gaaataaagctaattactttgattttgcagcgtgtatcattatcaggcattgcctatgtacttgtctccactgtcattacagtttcagttcatgaacttg  10962100  Previous    Next  AGI:  At4g20310.1    Description:  metalloendopeptidase. similar to hypothetical protein OsI_003065 [Oryza sativa (indica cultivar-group)] (GB:EAY75218.1); contains InterPro domain Peptidase M50; (InterPro:IPR008915); contains InterPro domain Peptidase M50, mammalian sterol-regulatory element binding protein; (InterPro:IPR001193) Range:  from: 10961624    to: 10963958    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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