Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                <----                                                                                              -------                                                                                            <--------                                                                             <---------HSFB2a(2)-----                                                                             --------->HSFB2a(2)-----                                                                --------->DEAR3(1)        <---------HSFC1(2)                       ----------->RAV1(2)                      --------->MYB46(3)        --------->HSFB2a(1)  ----------->HVH21   -------->P             <------NtERF2     --------->At4g35610        <---------HSFB2a(1) ---------->GT1    <---------MYB52(2)     <---------ZAT18      <---------At4g35610        --------->HSFC1(2) ---ARR10      <---------At4g35610        --------->ZAT18   --------->At4g35610         <------ZmHOX2a(1) >GLK1(2)   <-------TEIL              ------>ZmHOX2a(1)    --------->ANAC46 <---------LBD16 ---------   agcagtgacaaaaattcatctactaacctgatgccaagtccttgggcgcaagtttcttcataagcagcgaccatttcttctggagacttaggagtttcct  10845800                                                                    <---------ARR11(3)                                                                  <---------MYB52(1)                                                                 --------->LBD16      --------->GLK1(1)          --------->YAB1                 --------------------->WRI1      <---------GLK1(1)          <---------ICU4                 <---------ANAC58 --------DOF2                   <---------YAB1                  <---------ANAC58 -----------AGL15            <---------YAB1                     <---------ANAC55(1) ---------->AGL1          <---------ATHB12 ==================================HOX2a_HOX2a    <-------- -ARR14(2)          --------->ANAC58<-----------GT1             --------->ANAC55(2)        <---------ANAC58 ->ZmHOX2a(1)   --------->YAB1--------->YAB1                    <---------ANAC46  <----------DOF2 ---------->AGL15   --------->ANAC58--------->YAB1----------->RAV1(1) ------>ZmHOX2a(2)    <---------ANAC58 >ARR14(2)     <---------ZAT6--------->ICU4------>ZmHOX2a(1)    <---------ANAC55(2)    ---------->DOF2   ctttggagaaatccatagtgataagccagtgattataatcacatccttcgaacaacacagtgtcttccgtgatctcatcaccttctttgtaaagcttgta  10845900                                                                                   <---------REM1(2)                                                                                  ------>NtERF2                                                                                  <-----------HVH21                                                                                 --------->RRTF1(2)                                                                                 --------->DREB2C(2)                                                                                 --------->RAP2.3(3)                                                                                 --------->RAP2.3(2)                                                                                 --------->RRTF1(3)                                                                                 --------->DEAR4(1)                                                                                 --------->DEAR3(1)                                                                                 --------->RAP2.6(2)                                                                                 <---------ETT(1)                                                                                 --------->At1g77200                                                                                 --------->ANAC46                                                                               <---------At4g35610                                                                               ------>NtERF2                                                                               --------->At4g35610                                                                               --------->ABI4(1)                                                                               <---------ATERF1(1)                                                                              --------->RAP2.3(2)                                                                              --------->RRTF1(3)                                                                              --------->RAP2.3(3)                                                                              --------->RAP2.6(2)                                                                              --------->ATERF1(2)                                                                              <---------DEAR3(1)                                                                              --------->DEAR3(1)                                                                              <---------ATERF1(2)                                                                              --------->RRTF1(2)                                                                             --------->ATERF1(1)                                                                             --------->RAP2.6(1)                                                                             --------->DEAR4(2)                                                                             --------->ERF1                                                                             --------->ORA47(2)                                                                             --------->RAP2.3(1)                                                                             --------->RRTF1(1)                                                                ------>ZmHOX2a(2)----------->HVH21                                                               <------ZmHOX2a(2)--------->ERF1                                                               <---------GLK1(1)--------->DEAR3(2)                                                               --------->GLK1(1)--------->ORA47(2)                                                              <---------ARR14(2)--------->RAP2.3(1)                                                         --------->MYB52(1) --------->ABI4(1)                                                  --------->ZAT18           ------>NtERF2                                                 --------->ANAC58          --------->ANAC46----------                       ------->PIF5              --------->ANAC58  <----------DOF2----------->RAV1(1)                       <-------PIF5             --------->SPL7--------->ARR14(2)--------->RRTF1(1)                       <---------MYB52(1)     <---------SPL7  ------->TEIL --------->DEAR3(1)                      --------->LBD16      <-----------HVH21  <---------AGP1<---------ATERF1(1)<-----                      <---------DEAR3(2)   --------->LBD16    <---------ARR11(3)<------NtERF2  ------ -------AtSPL3       <---------DEAR3(1)   <---------ANAC46    --------->ARR11(3)--------->ATERF1(1)   ctgcctcgttgaaaacagtctcgccggtgctcgagtagctacttccgtcgaacgccctataacggatctctttaacaccgccgccgacacagaagggaaa  10846000                                          <------ZmHOX2a(1)                     --------->GLK1(1)                                      --------->TOE2(2)                         <---------GLK1(1)                                      --------->TOE1(2)                        --------->ARR11(3)                                    <---------YAB1                             <---------ARR11(3)                              ===================HOX2a_HOX2a              --------->At5g28300                              ------>ZmHOX2a(2)                      ----------->HVH21                           --------->ATHB12                         <------NtERF2  --------->YAB1 ->GT1  <---------ANAC46 <---------WOX13(1)                       <---------DEAR3(1) ----GLK1(1)  ===================================HOX2a_HOX2a    <-----------HVH21 <---------YAB1 --->GLK1(1)  ------>ZmHOX2a(2)----------->GT1           ---------->DOF2<---------DEAR3(1)   tcagacgctggtgtgatcgaagagctaattgatcggttaacataggaagtcgcagtgagtaaagctcgtcggagacggtgagatatcatagccatcgttg  10846100                             <---------HSFC1(1)                             --------->HSFB2a(2)                             <---------HSFB2a(2)                            <---------LBD16                                    --------->ARR11(3)                         <---------ZAT14                                       <---------ARR11(3)                  <---------ZAT14                               <---------ANAC58       <---------AHL20(2)                 --------->ALFIN1                               <-----------RAV1(1)   --------->AHL20(2)              <------ZmHOX2a(1) ---------->DOF2                 <---------ANAC46      <---------AHL20(2)         <---------YAB1  <---------ARR14(2)              *TSS   <---------ANAC58 >>>>>>>>>RAP2.2  <--      <---------ATHB51   --------->ARR14(2)            <---------TOE2(3)  ------------>CBF    <------      --------->ICU4<---------ANAC46 <----------DOF2   <---------TOE1(3) <-----------GT1   ----------   ccagagaaattatgaaggagtggagagtattctggaaagctttggagaaatgaaattagggtttttgtgtgggttttacaatatctaaataaatagtaaa  10846200                                           ---------->DOF2            --------->ICU4             ------>NtERF2                                                - <----------DOF2                       --------->LBD16     --------->ZAT6                           < <---------DAG2                      <---------LBD16      <---------YAB1                       <----- ---------GT1 <------------CBF     <-----------GT1       xxxxxxxxxxxxxxxx>smallRNA(s)      <--------- ---AHL20(2)------>ZmHOX2a(1)      <---------ARR14(2)  --------->AHL20(2)              <---------DAG2 ->GT1      <---------YAB1         --------->ARR14(2)  <---------AHL20(2)              <----------DOF2   ttactttttaagtccttattgtttcaaatgtttttagtttccgcctaaagtttcaaatttatcactgggccaaaaaacttaggccttagctttttactat  10846300                                                                                      <---------YAB1                                                                                     <---------ARR11(3)                                                                                   <---------MYB52(1)                                                                                   --------->DOF5.7(2)                                                                               ------>NtERF2                                                                              ----------->TGA1                                                                              --------->DEAR3(1)                                                                              ----------->HVH21                                                                              <---------DEAR3(1)                                                                             <------NtERF2                                                                             --------->ATERF1(1)                                                                             --------->RAP2.3(1)                                                                            <---------RAP2.3(1)                                                             --------->At5g28300<------NtERF2                                                            ----------->GT1 <---------ATERF1(1)                                                        --------->DEAR3(1)  <---------DEAR3(2)                                                        ----------->HVH21   <---------ORA47(2)                          <------------------------ANAC81------>NtERF2     <---------DEAR3(1) -------->At4g35610      *TSS     <<<<<<<<<TBF1       ------>NtERF2        --------->ETT(1) ---------At4g35610   <---------MYB52(1)              --------->LBD16     --------->ATERF1(1)       < ----ZAT14   <-----------GT1   <<<<<<<<<TBF1         <---------LBD16      <---------ORA47(1)     <--- --GT1  <-----------TBP --------->MYB52(2)          <---------LBD16  <-----------RAV1(1)<----------DOF2   accgctgtcgttttataactctctgtttgtttcttcttcttctccctctctatttccggcgactgtgaattatgtggtcggcgacgttatctttcccttc  10846400                                     --------->TOE2(3)                                    <---------HSFB2a(1)                                  <---------ARR14(2)                                  --------->ARR14(2)                                 <------ZmHOX2a(1)                         ------>MYB46(1)                         <---------ICU4                                              --------->ANAC58                         ------>MYB83--------->TOE1(3)                               --------->ANAC58     <---------ANAC58   --------------->AGL15                                      <---------ANAC58     <---------ANAC46  --------->TOE2(3)                                  <---------At5g28300     <---------ANAC58  <---------MYB59  <---------TOE2(2)            --------->AHL20(2)          <---  <---------RAP2.6(2)  <---------MYB46(2)                            <---------AHL20(2)      <------- -----------RAV1(1)    ----------------->AGL3          ---------->DOF2   <-----------GT1     -------- -------DOF2           <---------MYB111(1)        <---------ATHB12 <----------DOF2 <---------ANAC58   ttttgtggcttcttcatcttctctacctaattacaggaaccttaggtttccaaagattaaagcttcgctctttaattaccctctagcgagcaaaatcatg  10846500                                                                                     --------->YAB1                                                                                     ----------->GT1                     <----------DOF2                 ----------->ARR10              --------->DAG2                  <---------ARR11(3)             --------->At4g35610               ---------->DOF2                  --------->ARR11(3)             <---------At4g35610             <---------HSFB2a(2) --------HVH21 <---------GLK1(2)                 <---------ZAT2            <---------YAB1     <------ --ICU4    <-------TEIL               --------->ARR14(2)    <------ZmHOX2a(1)    --------->HSFB2a(2) ->YAB1   --------->CCA1(2)    <---------YAB1    --------->ZAT2         <---------MYB52(1) <---------AHL20(2)   gtcagaagtaagattcagattatcttttggtttatatttgaattcgcttctagctgagattaggacatggttctgttattgttccaaaagtaatttatga  10846600                                                                                 <---------YAB1                                                                                --------->TOE2(3)                                                                               <---------ICU4      <-                                                                               --------->ATHB12    <-                                                                               <--------HAHB4      <-                                          <---------MYB52(1)                   -------->ATHB1      <-                                     ----------->TGA1                          --------->YAB1     <--                                <------ZmHOX2a(1)                             --------->ICU4      ---                               <---------YAB1                                 <---------ATHB12    <--      --------->ATHB12         --------->ICU4                     <---------ARR11(3)              ---     <---------YAB1 --------->ATHB12 ----------->HVH21            --------->ARR11(3)  <---------ZAT14 ---YAB1<---------WOX13(1)   <-----------RAV1(2)     ----------->HVH21      --------->WOX13(1)    <--   ttctggtttgattgaaattagttgatttgagtcaggattgtgacggtagtcatatgtgatagctctaagctcttgtagcaatcattagtgaagttgaagt  10846700  Previous    Next  AGI:  At4g20020.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44780.1); similar to Os11g0216400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067510.1); similar to hypothetical protein OsI_034331 [Oryza sativa (indica cultivar-group)] (GB:EAY80372.1) Range:  from: 10844412    to: 10846157    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g20030.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G20930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41945.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 10846325    to: 10847402    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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