Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      >                                                                                                   --                                                                                                   --                                                                     --------->YAB1               ---                                                      <---------MYB52(2)--------->YAB1           <---                                                      --------->MYB46(3)<---------ICU4           <---                                                    --------->MYB52(1) <---------YAB1            <---                                             XXXXXXXXXXXXXXXXXXXX>MIR3933                        <---                               <-----------GT1--------->YAB1       --------->AHL20(2)            <---                              --------->YAB1--------->AtLEC2       --------->AHL20(1)           <---- ------->DOF2           <------ZmHOX2a(1)   --------->ANAC58       <---------AHL20(1)           ----- ---->CCA1(2)     <---------ANAC55(2)       --------->ANAC58--------->ANAC58                    ----- --->GT1          --------->ANAC58          --------->ANAC46--------->ANAC58         <---------YAB1-- >DOF2            --------->ANAC58    ------>ZmHOX2a(1)------->GAMYB<---------AHL20(2)        <------   aaaagcgactcttgagcatcaagtaaggacaattaacatcctcgacaagcaaaacaacgaccaagtcaatataatcatagctaaattctaattgtatcac  10841600 >>>>>>>>MYB98 ---->MYB83 ------->MYB52(1)                                            --------->DAG2 ------>MYB55(1)                                           ---------->DOF2 ------MYB46(2)                                          ----------->HVH21 ------MYB111(2)                                       <---------ANAC58 ------MYB111(1)                                       <---------ANAC46 ------MYB59                                      <----------DOF2                                   - ------MYB52(2)                               <---------ANAC46                                      - -----ANAC55(2)                               <---------RAP2.6(2)                       <---------AtLEC2 ---->At4g35610                              --------->RAP2.6(3)                    <----------DOF2 - ---->ANAC55(2)                              <---------At5g28300             <----------DOF2        - ---->MYB46(1)            <---------AHL20(2)--------->MYB52(1)               ----------------------->TaNAC69(2) -----GT1       <---------AHL20(2)       <---------ICU4<---------ANAC58<---------MYB52(1)         <--   ctaacaaaacaaaaacgttttattgtatttttatgagttttgaaaattacggctatagcgtgaaaggtgagacgtttgtctttagtctttacatgtcaat  10841700     ----------->HVH21        --------->ANAC55(2) -------->ANAC55(2)           <---------ANAC46   <---------ANAC58                --------->YAB1 -------->ANAC46         <---------YAB1          <---------ANAC46        --------->CCA1(2) -------->ANAC58      --------->AHL20(2)         <---------ANAC58        <---------GLK1(1) -------->ANAC58      <---------ATHB51      <---------AtLEC2        <-----------GT1         --------- ---------GT1  --------->GLK1(1)           <-------TEIL<---------At4g35610      <---------YAB1  -----   ttacgaaatgacgactgaaatcaaattattctacgtgttttgatgtgcatggcgtttagcttattgtttttttcgatatgcgataatagttttaagtcta  10841800                             <---------AHL20(2)                        <---------AHL20(2)                        --------->AHL20(1)              <---------------AGL15                        <---------AHL20(1)              --------------->AGL15                       --------->AHL20(2)              ----------------->AGL3                      <---------YAB1                   ----------------->AGL2            <---------AHL20(2)                <---------ARR11(3)            --------->AHL20(2)  --------->ARR11(3)   --------->ANAC46            <---------AHL20(1)  <---------ARR11(3)   <-----------GT1                           <-----            --------->AHL20(1) <---------CCA1(2)   <-----------GT1                           <-------         --------->YAB1--------->YAB1         --------->ARR11(3)                           --------->ANAC46 >ZAT6  <---------AHL20(2)   --------->AHL20(2) <---------ICU4                             --------->ANAC55(2) --->P --------->AHL20(2)<---------YAB1      --------->YAB1                         ------>NtERF2   ccagttttatataataaaatggctattatatttatatctactgtatatgatatttacaccaattttagcaacatgcttcttgactccgactataagtaat  10841900                                                                                        --------->ANAC46                                                                                    ----------->RAV1(1)                                                                                  <------NtERF2                                                                                 ------>NtERF2                                                                                --------->ANAC58                                                                                --------->ANAC46                    --------->YAB1                 <---------At4g35610         --------->LBD16                   <---------YAB1                  --------->At4g35610       <---------LBD16  -------                  <---------AHL20(2)             --------->ZAT14       <---------MYB52(1)  --------->MYB52(1)                  --------->AHL20(2)             <---------ZAT14   <-------TEIL------>NtERF2 *TSS     ------->TEIL --------->AHL20(1)             --------->ZAT18  --------->CCA1(2) ------>NtERF2 --- -------CBF      --------->YAB1       --------->ANAC46           --------->ARR11(3)--------->DEAR3(1) --AHL20(2) ------------>CBF ------>NtERF2  ---------->DOF2    <---------TOE2(3)--------->ANAC58 ----   tgagatggacccaaaacaattataatagtgaggcccatacaaggcccaaagtgaactgaataactaagatacagttatctccgcgccaacacaaaacgac  10842000                                                                     --------->ANAC58                                 <----------DOF2                     --------->ANAC58             <---------ANAC58    <---------DAG2                    ---------->DOF2    <-----------GT1         ---------->ID1              ------>ZmHOX2a(1)                   <<<<<<<<<MYB2 -->MYB52(1) <---------ANAC58 ------>NtERF2            --------->TOE1(3)       <---------TOE2(3) ------>At5g28300         <-----------GT1              --------->TOE2(3)       <---------TOE1(3) ------->GT1 ----------->RAV1(2)<---------DAG2  ---------->ID1  <-----------HVH21 <---------GLK1(1)   ggtaaattactacttgcctgagaaaattttgcccccttttgcttcaatttgttgtttccttaaacccttcaaagcaaaattagggtttctcttggttttc  10842100                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                          --------->ANAC46                                                              --------->ICU4                                            <---------GLK1(1)--------->ANAC58    --------->AHL20(2)                                            --------->GLK1(1)--------->ANAC58    <---------AHL20(2)             <-----------GT1    --------->ICU4     --------->ARR14(2)  --------->KAN4(2)     --------     <---------TOE2(3)        ---------->DOF2      <---------ARR14(2) <---------KAN4(1)      <-------   gcaaattagggattttttctctcgttctcatgaaaagatgagtttgatttccaaatccttggcaagaattgaatgttcgccatttttttatccaagagct  10842200                                                                 <---------ANAC46                                                                <---------LBD16                                                                <------NtERF2                                                                --------->ATERF1(1)                                                               <---------RAP2.3(1)                                                               <---------DEAR3(2)                                                               <---------ERF1                                                               ------>NtERF2                                                              <---------At1g77200                                                              <---------DREB2C(2)                                                              <---------DEAR3(1)                                                              <---------RAP2.3(3)                                                             <------NtERF2                                                             --------->ATERF1(1)                                                            <-----------HVH21                                                            <---------SPL7                                                           <---------MYB46(3)                                                          --------->ATERF1(1)                                                          --------->SPL7                                                         <---------DREB2C(1)                                                         <---------ATERF1(1)                                                         --------->DREB2C(1)                                                         ------>NtERF2                                                         <------NtERF2                                                         --------->ATERF1(1)                                                        <---------ATERF1(1)                                                        ------>NtERF2                                                        <---------SPL7                                                        <---------RAP2.3(1)                                                       <---------DEAR3(1)                                                       <---------ATERF1(2)                                                       --------->ATERF1(2)                                                       --------->DEAR3(1)                                                       --------->ATERF1(1)                                                       <---------RAP2.6(2)                                                       <---------RAP2.3(2)                                                      --------->ATERF1(1)                                                      <---------DREB2C(1)                                                      <------NtERF2                                                      ------>NtERF2                                                      --------->DREB2C(1)                                                     <---------RRTF1(1)                                                     <---------RAP2.6(1)                                                     <---------ATERF1(1)                                                     <---------RAP2.3(1)                                                    <---------DEAR3(1)                                                    <---------RAP2.3(2)                                                   <---------LBD16                                                   <---------ZAT14 <------NtERF2                --------->MYB52(1)  --------->GLK1(2)------>NtERF2--------->LBD16            --------->LBD16         --------->ARR14(2)<---------At4g35610          <---------LBD16           <---------ARR14(2)--------->At4g35610         --------->MYB52(1)        <---------GLK1(1)<---------RRTF1(3)     <---------ICU4                --------->GLK1(1)<---------RRTF1(2)  <---------GLK1(1)             --------->LBD16    --------->ZAT14------>NtERF2                   <--  --------->GLK1(1)   --------->GLK1(1)  <---------MYB52(1)--------->DEAR3(1)                 ------- ->ARR11(3)--------->HSFB2a(2) --------->ANAC46   <-----------RAV1(1)                   ----------->GT1 --ARR11(3)<---------HSFB2a(2)<---------LBD16<-----------GT1<---------ATERF1(1)      ---------->DOF2   tcagaaatcactaccggaaaacggataacctctccgcaaatccgtttatacactgcggcggccgtcggcgggaaaactggaaatggagaaaggaaacaaa  10842300                                                                        <---------O2                                                                        --------->DEAR3(1)                                                                        --------->O2                                                                        ----------->HVH21                                                                       --------->ATERF1(1)                                                                       <------NtERF2                                                                      <---------ATERF1(1)                                                                      ------>NtERF2                                                                     <---------DEAR3(1)               <---------ARR14(2)                                    --------->DEAR3(1)          --------->LBD16                                        <---------LBD16         ------->PIF5                                     <-----------HVH21         <-------PIF5                         --------->At4g35610<---------At5g28300        <---------LBD16                     --------->MYB46(3) ----------->HVH21        --------->DEAR3(2)                --------->ARR14(2)  <-----------HVH21       --------->MYB52(1) <------NtERF2   <---------ARR14(2) --------->WOX13(1)     <---------ABI4(2)--------->LBD16  ----------->HVH21  <-----------TGA1  ---------->DOF2   <---------LBD16----------->RAV1(2)   <---------ANAC46 --------ID1   --------->ARR14(2)<---------ALFIN1        <---------ANAC58 --->DOF2--------->DEAR3(1)   ----------->HVH21          <---------ANAC58------>NtERF2        ------>NtERF2   gagccaaagcaccggcgaaaactccggaggcagtgacacctgtgaaaccgctggagattgcgtcagtcacggcgacgacggagaatgaattgcctcggcc  10842400                                                                                             --------                     <---------REM1(1)                                                       <-------                   --------->ZAT18                                                           <-------                   --------->ZAT14          <---------WOX13(1)                      <---------YAB1                   <---------ZAT14        --------->ATHB12                  --------->HSFB2a(1)        <---------ANAC58                 <---------YAB1                     --------->HSFC1(2)        <---------ANAC58         ----------->GT1            -------->P      <---------HSFC1(2)-------       --------->At4g35610   --------->ARR14(2)            --------->WOX13(1)     <---------At4g35610       <---------At4g35610   <---------ARR14(2)    <---------MYB46(3)       <---------HSFB2a(1)   taatgagatagcttacgagagtgaagtagcgaattgggttaatctgattggatttgttgatcaaccagttcaattcgaagcttcttctgatggcaaattc  10842500  Previous    Next  AGI:  At4g20010.1    Description:  OSB2/PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE9); single-stranded DNA binding. similar to OSB3, single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT5G44785.1); similar to mitochondrial SBP40 [Solanum tuberosum] (GB:AAX34397.1); contains InterPro domain Primosome PriB/single-strand DNA-binding; (InterPro:IPR000424); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 10841993    to: 10844134    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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