Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------ARR14(2)                                                <---------GLK1(2)                                                --------->ARR14(2)                                             <---------ANAC58               <------ZmHOX2a(2)             <---------ANAC58              <-----------HVH21              <---------ANAC46            --------->DEAR3(1)              <---------LBD16                                    <-----    <----------DOF2                 --------->MYB46(3)                                     --------->MYB46(3)    <---------DAG2                 ------>MYB83<------NtERF2                               <---------MYB111(2) --ZAT18  <---------At4g35610      ------>MYB46(1)                                        ------>MYB46(1) --ZAT14  --------->LBD16         --------->MYB52(1)        <------ZmHOX2a(1)             ------>MYB83 ->ZAT14  ------>NtERF2           ----------->RAV1(1)    <-----------RAV1(2)           --------->DEAR3(2) ->ZAT18<---------LBD16         --------->MYB46(3)  <---------YAB1                     --------->MYB46(3)   catcgacttttccgccgatcacatatatttcagaaccaacagctatggcggattttgatacaggagaaagattagaagagggaattggaaccaacaactt  10783900                                                     <---------ZAT6                                               --------->ATHB12                                            <---------ANAC58                                            <---------ANAC58                    ------>ZmHOX2a(1)       <---------ANAC46      <---------ZAT6  --------->GLK1(1)              <<<<<<<<<TBF1     <---------ATHB12    <---------TOE2(3)  <-----------------AGL1 -----DOF2 <<<<<<<<<TBF1        --------->MYB46(3)  <---------TOE1(3)  <-----------------AG <--------   tccaattgtcttcttcttcttcctcttcttctcaaccatggagttggcttgattagggttaacccagagtgtaaaccatttgggaaattcaaaactttta  10784000                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                            --------->CCA1(2)                                           <---------ARR14(2)                                           --------->AGP1                                           <---------ARR11(3)                                           --------->ARR14(2)                                           <---------AGP1                                          <---------GLK1(1)      <---------MYB46(3)   --------->HSFC1(2)                                         ----------->ARR10    <---------ANAC46        <---------HSFC1(2)                                 <---------ANAC46         --------->ZAT2         --------->ANAC58 ---                                <---------LBD16           <---------ZAT2 --------->ICU4 <---------DAG2                         <---------DEAR3(1)--------->ARR11(3)<---------DEAR3(1)  --------->ANAC58<xxx --DOF2           <---------ALFIN1  <---------DEAR3(1) ---------->DOF2   <---------YAB1 <----------DOF2   tcagatagacagacatagacacactcttcggtgtttcggaggtgagatctggctacatagagctcggtggatgagataattgaacggaagcttttcgaaa  10784100                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                              --------->CCA1(2)                             --------->ARR14(2)                             <---------ARR11(3)                             --------->AGP1                  <---------HSFB2a(2)                  --------->SPL7   <---------ZAT2            --------->HSFB2a(2)              <---------------AtSPL3                     <---------ANAC58              --------------->AtSPL3                     <---------ANAC46              <---------------AtSPL8        <---------ARR14(2)           <---------MYB46(3)<---------ARR14(2)--------->HSFB2a(2)                 --------->At4g35610       --------->ALFIN1     <---------GLK1(1)  <---------HSFB2a(2)          <---------MYB52(2)      < ------>ATHB12--------------->AtSPL8        --------->ARR14(2)   <----------ARF1 <------ZmHOX2a(1) <- xxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ZAT2        <---------ANAC58 --------->MYB52(1)---------   cgattgagagtgttggatagtacgacctcgagatccgagctaagcagttctcgacgatttcgtctgggagagaagacaacgaaggagatgaagacgacgg  10784200                                                       <---------ANAC58                                                       <---------ANAC46                                                  <---------AtLEC2            <----------DOF2                                                  <---------ANAC58            <---------DAG2   ----------->HVH21                              <---------ANAC58      --------->YAB1   ----------->TGA1          ---------->ID1     <---------YAB1     --------->LBD16 <------MYB83          ------>ZmHOX2a(1)   <---------MYB46(3)     --------->RAP2.6(2) <------MYB46(1)   <---------SPL7         <---------AtMYB61       --------->DEAR3(1) ---------MYB46(3)<---------ANAC58       <---------MYB52(1)       --------->ANAC46 -------P         <---------ANAC58      --------->LBD16<---------ANAC58--------->ICU4     <---------WRKY12 >MYB52(1)       ---------->ID1       <---------LBD16 ---------->ID1<------NtERF2       <-----------HVH21   agttggtgacgaagcatttgtcgtcctcttcgtcttcttctccggtggttttgcttggcgtttcatagccgcagtgatgactttattttgggtcaaatga  10784300                                                                            <---------ANAC55(2)                                                               --------->AHL20(2)                                                               <---------AHL20(2)                                                  ---------->DOF2          <-------TEIL                                          <------------CBF    --------->YAB1--------->ANAC55(2)                     <---------DAG2      --------->MYB52(2)   <---------AHL20(2)                    <  ------------>CBF   <----------DOF2 ----------->GT1          --------->AHL20(2)                  <--   gaaaaacaattctcatatgaacactttttggttttagttttgttaattgcaaaacagcccctaattaaaattttagttacataagagaccacaaaatgct  10784400                                                             <---------ARR11(3)                                                           ----------->HVH21                                                         <---------TGA1a                                                         <---------O2                                                         --------->bZIP60(2)                                                         --------->TGA1a                                                         --------->O2                                                     --------->LBD16                                                     <-----------HVH21                                                     ------>NtERF2                     --------->At5g28300                                                    --------->ANAC58                  ----------->GT1                                                    --------->ANAC46                <---------ZAT14                                                    --------->ANAC58              <---------WOX13(1)    ----------->GT1                <---------ANAC55(2) <---------ALFIN1          <------------CBF   --------->DAG2             ----------->GT1    --------->ARR14(2)      ------------>CBF  ---------->DOF2            <---------TOE2(3)   <---------ARR14(2)   --------->HSFC1(2) ------ZmHOX2a(1)        <-------TEIL  ---------->DOF2 ----------->RAV1(1)      --------->ATHB12 -------TOE2(3)      <---------TOE1(2) ============================bZIP_DOF    <---------YAB1   -----   gaggaaaagtagaatcgaactccaaggttcaaaggttacataaaagaccctaatccgccacatgaccttcgaagtttcaatgtgattgcagtaaaaacaa  10784500                     ------------>CBF                  <------------CBF             --------->ALFIN1                           <---------AHL20(2)                     ------           ------->GAMYB      ----------->GT1       <----------DOF2    --------->TOE2(3)       ------ ---->MYB52(1)--------->REM1(2)                ---------->DOF2   --------->YAB1   <---------ICU4  ---   acagtgttttcaaccgtggagattgcaataaactgtaacatatcaaacagaaagctttttatttttctcataacataaaactcaacatcacttgcaatgt  10784600                                                                          --------->CCA1(2)                                                                         --------->ARR11(1)                          --------->ICU4                                 <---------ARR11(3)                        =================================================bZIP_DOF                        ---------->DOF2                           <-----------HVH21       <---------ARR11(3)                     ----------->GT1                           <---------TGA1a            --------->ARR11(3)     --------->ANAC58<------MYB83                              --------->O2     ------>ZmHOX2a(2)     --------->ANAC58<------MYB46(1)   <----------DOF2         --------->TGA1a<---------ARR11(3) --->YAB1           --------->MYB59    ==================================bZIP_DOF<----------DOF2 --->TOE2(3)<---------TOE1(3)      ------>ZmHOX2a(1)           =============================bZIP_DOF ------->DOF2<---------At4g35610  <---------MYB59              <---------O2   --------->ARR11(3)   taaagacacgacttaagcttatttggtaaagatggtcctaactttctgaagacagaactcaactcatgtgtcaaagatttgatctttgatgagatgtttt  10784700                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                       <------NtERF2                    --------->YAB1                                                   <---------DEAR3(1)                    <---------ICU4                                                --------->MYB55(2)                   <------ZmHOX2a(2)                                          --------->ETT(2)        <---------ARR14(2)                                                    ----------->HVH21        --------->ARR14(2)                    <------MYB83                    ------>ZmHOX2a(2)        --------->GLK1(2)                    --------->MYB59             <--------P--------->ALFIN1        <-----------ARR10                 --------->ATHB12         ---------->DOF2<---------MYB46(3)       <---------GLK1(2)      <---------ANAC46<------MYB46(1)  ------>ZmHOX2a(2)<---------LBD16------   tcatttggagaatctgtgtcgatcatgaggcgaagtgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttccatag  10784800  Previous    Next  AGI:  At4g19870.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/kelch-repeat protein At4g19870 [Arabidopsis Thaliana] (GB:Q8GXF6;GB:O81868); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G19865.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro Range:  from: 10782881    to: 10784266    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g19880.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45020.1); similar to Intracellular chloride channel [Medicago truncatula] (GB:ABC75353.2); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like (InterPro:IPR010987); contains InterPro domain Glutathione S-transferase, C-terminal (InterPro:IPR004046); contains InterPro domain Glutathione S-transferase, predicted (InterPro:IPR016639) Range:  from: 10784401    to: 10786566    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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