Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          >>>>>>>>>MYB98                                                                                      ------>ZmHOX2a(1)                                                                                     <---------MYB59                                                                                    ------>ZmHOX2a(2)                                                                                   <------ZmHOX2a(2)                                                                                  --------->ARR14(2)                                                                                  --------->ARR11(3)                                                                              ---------->DOF2                                                                            --------->ANAC58                                  <------ZmHOX2a(2)                         --------->ANAC58      <--              <----------DOF2   <------ZmHOX2a(1)                          ----------->RAV1(1)    ---     ----------->GT1     --------->At4g35610                             --------->At4g35610      <--    --------->DAG2     --------------->AGL15        <----------DOF2--------->ICU4 <---------ARR14(2)   ---------->DOF2  <-----------GT1              <---------ARR11(3)<---------YAB1 <---------ARR11(3) ---YAB1---------->DOF2<---------------AGL15  --------->AtMYB61  --------->YAB1 ----------->ARR10 ---   gaaaaaaaagtaaagactttttttaccagttgaaggatcaaatcgagaccacatctttgttcgaaactcatgatcagcaccaaagatcctaacccaaaca  10780100                                                                               <-------TEIL                                                                              --------->CCA1(2)                                                                              --------->GLK1(2)                                                     --------->LBD16          --------->ARR14(1)                                                     ------>ZmHOX2a(1)       --------->ARR11(1)                                                     --------->HSFB2a(2)     <---------ARR14(2)                            <---------ANAC46         <---------HSFB2a(2)     <---------GLK1(2)                          ------->GAMYB             <---------LBD16          --------->ARR14(2)                       --------->MYB52(1)        --------->GLK1(2)--------->MYB52(1)                      <---------WRKY12           <---------ARR14(2)  --------->LBD16 -----MYC3            <---------WRKY38(1)        --------->ARR14(2)<---------LBD16   <---------WRKY38(1) ---->MYC2        --------->ICU4           --------->TOE1(2)     --------->ARR14(2)  <---------WRKY12 -----MYC2        <---------YAB1          ==================HOX2a_HOX2a    ----------->ARR10       -- ---->MYC3      --------->YAB1            ------>ZmHOX2a(2)      <---------ARR14(2) --------->WRKY18(1)   cgttcttcgttcccgttctcatgatcaacggcgtttagaattgatccagcgattcctggaactagaagaaccgggtttagattcgggtcaacatagggtt  10780200                                                    --------------->AGL15                                                    <---------HSFB2a(2)                                                    <---------------AGL15                                                    =================================================                                                    --------->HSFB2a(2)                                                   ==================================================                                                   ----------------->AGL3                       ---------->DOF2        ------>ZmHOX2a(2)                     --------->At4g35610    <---------ARR11(3)               --------->At4g35610          --------->ARR11(3)               <---------At4g35610         --------->YAB1          --------->ATHB51        --------->GLK1(1)                  <---------ICU4          --------->ATHB12        <---------GLK1(1)             ------>ZmHOX2a(2)           <---------YAB1         ----------->GT1 ---->ZmHOX2a(1)     <---------At4g35610  <---------ATHB12        --------->ICU4 --------->ATHB12 <--   cctgattccgatttctgagcttcagcaaagcctctactgatctaatgatctcttccagtaatagagacataattgaattgaatcgattgcgaagtaaatt  10780300                    <---------LBD16<---------MYB46(3)                --------->ARR14(2) <------MYB46(1)                <---------ARR14(2) <------MYB83               ------>MYB46(1)    <---------AtMYB61             <---------------AGL15<---------MYB46(3)             <---------MYB59     <--------P             --------------->AGL15--------->MYB46(2)            ----------------->AG <---------MYB55(1)            ----------------->AGL1--------->MYB111(2)            <-----------------AGL3--------->MYB55(2)            <-----------------AG<-------GAMYB            ----------------->AGL3--------->MYB111(1)            <-----------------AGL1--------->ALFIN1            <-----------------AGL2<---------DEAR3(1)          <-----------GT1     <---------TOE2(3) ============================MADS_MADS                         --------->DAG2 ============================MADS_MADS                        ---------->DOF2 ---------->DOF2       - -------TOE2(3)------>MYB83   <---------TOE1(3)     <------ZmHOX2a(1)        --------->AHL20(2)   ---   gacgaaatcgtattaccaaatttggggaaattagggttggtgagagaaattgaaggattgaagaaaaagaggtgaacaataaaagaaatttttggaatat  10780400                           -------->HAHB4                           <---------ICU4                           --------->ATHB51                           <--------ATHB1          <<<<<<<<<WRKY18 --------->AHL20(2)                                         <------------CBF         --------->WRKY18(1)                  <-------TEIL                          --------->ATHB51       --------->ANAC58   <---------AHL20(2) <------ZmHOX2a(2)               <------------CBF       --------->ANAC46   <---------YAB1    --------->ARR14(2)         *TSS<---------YAB1       --------->ANAC58   --------->ICU4    <---------ARR14(2)  --------->ANAC58    --------->ATHB12-  <---------SPL7 <------NtERF2   --------->YAB1   <-----------------AGL3  ------------>CBF         -- --------->RAP2.6(2)      <---------ATHB51  ------->TEIL        --------->ANAC46    -------->ATHB1--- -------------->AtSPL3  --------->YAB1   <---------WOX13(1)   --------->MYB52(1)   --------->ICU4---- ------>ANAC46 --------->ALFIN1 <---------YAB1------>ZmHOX2a(2) --------->ANAC58   <---------ATHB51--   aagccgtacaagtcaaggtggcagaaaaataattgtcatagtgatggatccatcttcaaatggataacgcaagagtgacaattgaattattgagacataa  10780500             <---------AHL20(2)             --------->AHL20(2)          --------->AHL20(2)     --------->AHL20(2)     --------->YAB1         ---------->DOF2    <---------ATHB12    --------->ZAT6    <---------ATHB51  <-----------GT1                         <---------AHL20(2) ----------->CBF --------->AHL20(2)                       <---------AHL20(2) ------->ANAC58 <---------YAB1              ------------>CBF<-----------TBP ------>DAG2 <---------AHL20(1)        <---------ARR11(3) --------->AHL20(2) ------>DOF2 --------->AHL20(1)     --------->HSFB2a(2)   --------->ATHB51           <---------TOE2(3) ------->ANAC58 <---------AHL20(2)  <---------HSFB2a(2)  --------->ICU4          <---------YAB1     -   aaagcaataatataaaatattatttaactctaaagtttcgagatacttcaatacttggaattatttatagacatgggcacattattttagattaaaacca  10780600                                                                                            ---------                                                                                          --------->YAB1                                          <---------------AGL15                      <---------AHL20(2)                                          --------------->AGL15                <---------CCA1(2)            <-----------GT1               <---------YAB1                     <---------GLK1(2)         <----------DOF2       <----------DOF2            <---------ALFIN1  <---------At4g35610 ---------->GT1               <---------DAG2    <---------HSFB2a(2)--------->YAB1  <----------DOF2   agttgtaatttcttttaccaatttgttctctaccttttgtttttctcattacagaagcccatactccaaacagaactcagcatctcttttattgatgacg  10780700                <----------DOF2                ===================================bZIP_DOF         <---------GLK1(2)             <-----------GT1                          <---------AHL20(2)        <-------GAMYB                    --------->TGA1a          ----------->ARR10            ------       ----------->GT1                   <---------TGA1a <---------YAB1                        ------       <---------MYB46(3)   <---------MYB59        --------->ARR11(3)   <---------YAB1         <-----  <---------TOE2(3)      <------ZmHOX2a(1)         <---------ARR11(3)--------->GLK1(2)      <-------- -->TGA1===========================================MYC_MYB--------->ATHB12        <------ZmHOX2a(1)   aattgacgatggttataactttctgaaggacataactcaactcaagtgtgaaagattttatcattggtgcgattctcatttagaggagagaattgtgtcg  10780800                                                                                ---------------------                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                                                                          ------>MYB83                                                                          <---------LBD16                                                                          ------>MYB46(1)                                                                        --------->TOE1(2)                                                   ----------->GT1      --------->TOE2(2)                                               ---------->DOF2    <------ZmHOX2a(2) --->ETT(2)                            ----------->HVH21         --------->ARR11(3)          -------- --->WRKY38(1)                       ====================================HOX2a_HOX2a         -------- ----ETT(2)     <---------ATHB12     <------ZmHOX2a(1)           <---------ARR11(3)          -------- -ANAC46      --------->GLK1(1)    <---------TOE2(3)         ---------->DOF2  <---------GLK1(2)   accatgaggcgaagagaaatcaatgtttttgttcgtgaaggatgacccagaaagggttaatccaaaagatcatacctacggatttttagttttgcaagcc  10780900                                                                     --------->YAB1 -->TaNAC69(2)                                                    --------->YAB1 ->ANAC58                                                      --------->TOE2(3) ->ANAC58        ---------->DOF2     --------->YAB1          <-------TEIL ->ANAC46    ---------->DOF2        <---------YAB1         <---------GLK1(2)           --------->ZAT6   atccctacttgttagtaaagaaagactcaattcatagcatgataactcaaacaacaaatcagattcattaataacaagggattagacaaacactaatatg  10781000  Previous    Next  AGI:  At4g19860.1    Description:  lecithin:cholesterol acyltransferase family protein / LACT family protein. similar to lecithin:cholesterol acyltransferase family protein / LACT family protein [Arabidopsis thaliana] (TAIR:AT3G03310.1); similar to lecithine cholesterol acyltransferase-like protein [Lycopersicon esculentum] (GB:AAQ04833.1); similar to Lecithin:cholesterol acyltransferase [Medicago truncatula] (GB:ABN06031.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41991.1); contains InterPro domain Lecithin:cholesterol acyltransferase; (InterPro:IPR003386) Range:  from: 10777522    to: 10780471    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g19865.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/kelch-repeat protein At4g19865 [Arabidopsis Thaliana] (GB:P0C2G4;GB:O81868); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G19870.2); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G19870.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IP Range:  from: 10780966    to: 10782375    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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