Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->MYB52(2)        <---------MYB52(1)                                                   <------------CBF   ------------>MYB.PH3(1)                                                 --------->ARR11(3) -------->ANAC58                                                           <---------AHL20(2) <------ -------->ANAC58                                  <-------GAMYB            --------->AHL20(1)<------- -------->ANAC46                                 <---------MYB46(3)        <---------AHL20(1)-------- ---->ANAC58                                     ----------->GT1        --------->AHL20(2) --------->AHL20(1) ---->ANAC58       <-----------HVH21            <---------TOE2(3)     <---------AHL20(2)   <---------AHL20(1)   acaagaaaccgttagtagaggtgtcattgaagtgaagacttaaaatttttgtggttaaacaaaatgttgtattttaaaatattgttcttctaatatatat  10615400                                                                      --------->AHL20(2)                                                          <---------ICU4                                                         --------->ICU4                                                         <---------YAB1       --------->ANAC58         <---------TOE2(3)                           ----------->RAV1(1)      --------->ANAC58     --------->YAB1   ------>ZmHOX2a(2)     --------->CCA1(2)  ----------->GT1--------->ANAC46 ---AHL20(2)    <---------ANAC58           --------->AHL20(1)  <---------ANAC55(2) --AHL20(1)     <---------ANAC58           <---------AHL20(1)<---------AHL20(2)               ------- ->AHL20(1)   <---------YAB1               <---------AHL20(2)--------->AHL20(2)       <-----------GT1   tttctaatattaacatatgcttgatccaaaaatttccatgagtaatatatgaaaacaacataattaagtaaaaaaaatacaaggcatttttccaaattaa  10615500                             ----------->GT1                           ---------->DOF2                  <---------RVE1(1)                  <---------CCA1(1)                 <-----------GT1                 <---------ARR11(3)         --------->ANAC46        --------->YAB1                 --------->ARR11(3)         --------->ANAC58 <-----------GT1<-----------GT1 -->AHL20(2)    <------ZmHOX2a(1)           --------->ANAC58--------->AHL20(2)                      <   ctcaaacaaaaatccataggatatttttcaaaagtataaacaaaacaaggcatttttccaaattaactaattagaatattacaaattttgttagagaact  10615600                    <---------AHL20(1)                    <---------ARR11(3)                                       <-----------GT1                    --------->ARR11(3)         <-----------GT1            <---------ICU4                ---------->DOF2             <---------------AGL15         <--------HAHB4         <---------AHL20(2)               <---------AHL20(2)              --------->ATHB51     --------->ATHB12<---------RVE1(1)   <---------AHL20(2)              --------->ICU4    --------->AHL20(2)                   --------->AHL20(2)       <---------MYB52(1)    <---------AHL20(2)           ----------->GT1             --------->GLK1(2)                     --   <---------WOX13(1)<---------CCA1(1) --------->YAB1    --------->YAB1  <---------YAB1           <-- ---------AHL20(2)  --------->AHL20(1) --------->TOE2(3)----------->GT1--------->YAB1     -----------   atttgatttattgaattgaaaagatatttgtaatatagtaatattaattttactagtaatgaaaatcagttattcataattacagaatcaaactgacatt  10615700                           ------>MYB46(1)                           ------>MYB83                           ---------->DOF2                         <---------MYB59                        <---------ANAC55(2)                        --------->ANAC55(2)                ======================bZIP_DOF                <---------ANAC58                <---------ANAC58                --------->O2                                               --------->At4g35610                <---------O2                                    <---------ALFIN1                <---------TGA1a                                --------->ZAT14                <---------ANAC46                               --------->LBD16                <---------bZIP60(2)                           --------->ANAC58               --------               <-----------------------TaNAC69(2)             --------->ANAC58              ---------               ----------->STF1                   --------->ZAT14          --------->ZAT14  <--------              <---------TGA2(2)                   <---------ZAT14        --------->ANAC46   <--------           <---------At4g35610                   <---------ANAC46   --------->At4g35610     ---------  ------>ZmHOX2a(1)  --------->ARR14(2)   <---------AHL20(2) --------->ANAC46               ---------  ========================bZIP_DOF--------->DEAR3(1)  <---------ZAT6--------->ZAT14    --------->HSFB2a(2)  <----------DOF2    <---------ARR14(2)  --------->AHL20(2)  <---------LBD16   --------->AtMYB61 -------->ID1----------->TGA1    --------->DEAR3(2) ----------->GT1 <---------At4g35610<---------HSFB2a(2) ---------GT1----------->HVH21  ------->TEIL--------->ARR14(2)--------->ANAC46 <---------ALFIN1 >HVH21    --------->At4g35610--------->ZAT18 --------->TOE2(2)<---------ZAT14 --------->DEAR3(1)   tatccttttctgtagatgacgtggatacctaatgcaccgtcgattaaatctgcgtagtgaaaccccgcactgctcacagcaccacctctctcgaaccatc  10615800                                                                         <---------MYB46(2)                                                        <---------HSFB2a(2)------>MYB46(1)       *TSS                                    <---------GLK1(2)        --------->ANAC46  --------->HSFB2a(2)                      ------>ZmHOX2a(1)<------ZmHOX2a(2)  <---------HSFB2a(2)                      ========================HOX2a_HOX2a ->TOE1(2)              ------>ZmHOX2a(1) <---------ANAC58 <---------ARR11(3)                 ------- >HSFB2a(1)            --------->TOE2(3)  <---------ANAC58 --------->ARR14(2)                 ------- -HSFC1(2)         <----------DOF2 ================================HOX2a_HOX2a           ------->GAMYB -HSFB2a(1)       <---------HSFB2a(1)     --------->TOE2(3)<---------ARR14(2)        --------->ANAC46 >HSFC1(2)        --------->HSFB2a(1)  <---------MYB52(1)  --------->AGP1<---------MYB111(2)  ------- >MYB46(3)      <------ZmHOX2a(1)  ------>ZmHOX2a(1)    --------->HSFB2a(2)------>MYB83--------->ZAT14   gagtctcgaacccagagaggactttcctcagtgagtcctccgttccttagcttctcttccagatccaaactctcaccaaactttctcacaacacacacac  10615900                                                                   <------ZmHOX2a(2)                                  ------>ZmHOX2a(2)               --------->AGP1                                 <------ZmHOX2a(2)                <---------ARR11(3)                                 --------->GLK1(1)            <---------LBD16         <------ZmHOX2a(2)       <---------GLK1(1)            --------->LBD16        --------->ARR14(2)      <---------AGP1          --------->HSFC1(2) -->ANAC58                      --------->ARR11(3)      --------->HSFB2a(1)                         - -->ANAC58   <---------ALFIN1   <---------ARR11(3)     <-----------ARR10          <-----------GT1   < -->ANAC46 <---------ALFIN1 ---------->DOF2           <---------GLK1(2)  ----------->GT1         <---   aattcgattcgatccacactcttaaaatcccaaagatctctctgattttgaaattcgattcttccccagatcaacttgtgaatttttccacaattttggt  10616000                                                                                       ==============                                                                                       ------>ZmHOX2a(2)                                                                                      ===============                                                       <-------TEIL                   <------ZmHOX2a(2)                                         <---------------AGL15                       --------->ARR11(3)                                         --------------->AGL15                       <---------ARR14(2)                                         ----------------->AG                        <---------ARR11(3)                                        <-----------------AGL2                       <---------AGP1                                        ----------------->AGL2                       --------->AGP1            <---------ANAC55(2)         ----------------->AGL1                       --------->ARR14(2)            <---------ANAC58            <-----------------AG                        <---------CCA1(2)            <---------ANAC58            ----------------->AG                       ----------->ARR10      <---------YAB1             <---------ALFIN1   <------MYB46(1)        ========================== -------->ICU4                 <-----------GT1      <------MYB83           <------ZmHOX2a(2) ---------YAB1     <------ZmHOX2a(1)    <-----------------AGL1         --------->DEAR3(2) ----TEIL   <---------ANAC46--------->ARR14(2)     <---------AtMYB61   --------->MYB46(3)         ---   tcatgattttgatttcgtgaaggacttatggattcacacccttccctaatgggaaggtccattaccaattcgaaccgatcgagcttagatcttggtcgtc  10616100                                                                                           --------->ANAC58                                           ------>ZmHOX2a(2)                               --------->ANAC58                                    ------>MYB83                                           --------->ANAC46                                    ------>MYB46(1)                                       <---------LBD16                               <---------DOF5.7(2)                                       <---------ALFIN1     ---------->ID1          <---------MYB52(1)                                         <---------REM1(2)  xxxxxxxxxxxxxxxx>smallRNA(i)--------->WRKY38(1)                                 --------->MYB46(3) ====HOX2a_HOX2a             --------->DOF5.7(2)            ---------->DOF2   ------>ZmHOX2a(1) ====HOX2a_HOX2a         <---------At5g28300   --------->At4g35610           --------->TOE1(3) ====HOX2a_HOX2a      ------>ZmHOX2a(1)   <---------GLK1(1)<---------WRKY45  --------->TOE2(3)   <--- --->ZmHOX2a(1)       ============================HOX2a_HOX2a              <------ZmHOX2a(2)  <------   cttcttcgtcttcttcatcttctccttcaccgttaaccaaatcgatctccgatgcaagtagtcaaagtctctcttcgatccttaacaatccacacggagg  10616200                                        <---------AtMYB61                                      <------MYB83                                      <------MYB46(1)                                      <---------MYB46(3)                                     --------->MYB55(2)                                     --------->MYB46(2)                                     <---------AtMYB61                                     --------->MYB111(2)                                     <---------MYB46(3)                                     --------->MYB111(1)                                     <---------DEAR3(1)                                    <--------P                                   <---------ANAC58                                             <----                                   <---------ANAC58                                             <----                                   <-------GAMYB                                                -----                                  <---------MYB46(3)                                            <----                                  --------->ATHB12                             ----------->RAV1(2)                                  --------->MYB52(2)                          ------>NtERF2     -----                                  <---------DEAR3(2)                         <---------RAP2.6(2)-----                                  <------MYB46(1)                  ----------->RAV1(2)      ---------                                  --------->MYB55(2)               ==========================RAV<----                                 <---------AtMYB61                 --------->ZAT2      <----------DOF2                        ------->TEIL<---------MYB55(1)             --------->At4g35610<---------ANAC58               <---------ARR14(2)<---------MYB46(3)                <---------At4g35610<---------ANAC46            <---------TOE1(3)    --------->MYB111(1)               <---------ZAT2 <-------GAMYB------            <---------TOE2(3)   <--------P                       ============================RAV-----      <---------ANAC46<-------TEIL<------MYB83                   <-----------RAV1(2)  <---------ANAC58 -----P ----------------------->TaNAC69(2)                   --------->At4g35610 <-----------RAV1(1) ---TOE2(2) <---------YAB1     <-------GAMYB                 <---------At4g35610 <---------MYB46(3)   taagtctggtgtttatggttccgatgcatcttgggttggttggtggtcttcatcgacatttgtagctccagctgagtttgcgcctgttgcttcaacgaag  10616300  Previous    Next  AGI:  At4g19480.1    Description:  unknown protein Range:  from: 10614791    to: 10615327    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g19490.1    Description:  protein binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO46787.1); similar to hypothetical protein OsJ_013275 [Oryza sativa (japonica cultivar-group)] (GB:EAZ29792.1); similar to hypothetical protein OsI_014330 [Oryza sativa (indica cultivar-group)] (GB:EAY93097.1); contains InterPro domain Vps54-like; (InterPro:IPR012501) Range:  from: 10615807    to: 10623532    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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