Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->KAN4(2)                                         --------->ANAC58                      --------->HSFB2a(1)                                        --------->ANAC58                      <---------HSFB2a(1)                                <-------TEIL                      <----------TaMYB80                                --------->CCA1(2)                     <-------TEIL                                       --------->ARR14(1)                   <---------MYB52(1)                                  --------->ARR11(1)     <------                 --------------->AtSPL3                                --------->ARR14(2)    ------>MYB46(1)              --------->ARR14(2)                            <---------At4g35610  --------->ANAC46              <---------ARR14(2)                         --------->ZAT2<---------GLK1(2)<-----------GT1        --------->ANAC58                                 <---------ZAT2<---------ARR14(2)    ------>MYB83        --------->ANAC58                           -------->P     --------->MYB52(1)  <---------ATHB12        --------->ANAC46   <---------YAB1   --------->YAB1  --------->At4g35610 --------->WOX13(1)   ctcaaaccacaaggcaaaaccggtacattcccattgatcaaacgaatcaaaactaccctagcagccgataacagattcgcatcaagcaataaacctatca  10604100                                                                    <---------RAP2.6(3)                   --------->MYB52(1)                              --------->RAP2.6(2)          <----         --------->MYB52(1)                                   ---------->DOF2            ============      --------->YAB1            --------->MYB52(1)       <---------GLK1(1)               ------>ZmHOX2a(2) ---ATHB12         ---------->DOF2     --------->YAB1    --------->GLK1(1)        <----------DOF2  <-   ataaacaataagaacggagactaaaggagaaactaaacgaatcagaagctaatcggaagaaatccaaagccgtcttgggattaactttggatcgaaactc  10604200                                                                      ------>ZmHOX2a(2)                                                                     <---------GLK1(1)              --------->ARR14(2)                                     --------->GLK1(1)         --------->MYB52(1)                                          <------ZmHOX2a(2)            <--         ------>MYB46(1)                                --------->ANAC58                          <--         ------>MYB83                                   --------->ANAC58         --------->MYB52(1) -----LBD16   <---------ARR14(2)                 --------->ZAT6     <---------ARR11(3)            <-- =====HOX2a_HOX2a <---------HSFB2a(2)            <-----------GT1    --------->ARR11(3)   --------->ARR11(3) -----ZmHOX2a(1)  --------->HSFB2a(2)     <---------MYB52(1)       <---------GLK1(1)     <---------ARR11(3)   aggaaacaacctatcgaattcgagaggcgatagaacagttatcagttgtttacactgctcgtaatctagagatctcttcgacaaaactgaagataatcgt  10604300                                                                      <----------DOF2                                           <---------At4g35610       <---------ANAC58                                           --------->At4g35610       <---------ANAC46            <------ZmHOX2a(2)            --------->SPL7              <---------ANAC58            =============HOX2a_HOX2a    ------>NtERF2           --------->MYB52(1)           <-----------HVH21           --------->LBD16          --------->ARR14(2) -------ANAC46                        <---------RAP2.6(2)       <---------ARR14(2) -------ANAC58    <------ZmHOX2a(1)  <---------LBD16       <---------ANAC46             --------->HSFB2a(2) -------ANAC58 --------->At4g35610 <-----------GT1    <-----------RAV1(1)    ---------->DOF2   tcgtgtaaatgccgatcagaggaagtctcttccgatttatccggccgatgaacacactgttgcaggtatcggcttgtatgaaagcattttcgagatttcg  10604400                                       ---------->DOF2                                  --------->LBD16                                 <---------ANAC58                             <---------ANAC58              <---------ANAC46   <---------ANAC46             <------NtERF2   <---------ANAC58                         --------->CCA1(2)           <---------DEAR3(1)<---------ANAC46   ------>ZmHOX2a(1)---------->DOF2   ------->TEIL ----------->GT1  <---------ANAC58      --------->ATHB12            <------ZmHOX2a(1)<   ctatgaatttcaagcggcgagtgaataagtagcttgcgcgagaaagtctcctcaaatccattggtgagaaagagatgaaatgtgaggaagtcatttgcga  10604500                                 ------------>CBF                               *TSS                          <------NtERF2                         ------>NtERF2                         <---------RAP2.6(3)                        --------->ANAC58                        --------->RRTF1(2)                        --------->DREB2C(2)                        --------->ANAC46                        --------->ANAC58                        --------->DEAR3(1)                        --------->ATERF1(2)                        >>>>>>>>>AtERF-2                        >>>>>>>>>AtERF-3                        >>>>>>>>>AtERF-7                        >>>>>>>>>AtERF-5                        --------->RRTF1(3)                        >>>>>>>>>AtERF-4                        >>>>>>>>>AtERF-1                        --------->RAP2.6(2)                        --------->RAP2.3(2)                                  <------------CBF                        --------->RAP2.3(3)                              --------->ANAC58                       --------->RRTF1(1)                                --------->ANAC58                       --------->ERF1                                    --------->bZIP60(2)                       --------->RAP2.3(1)                               --------->ANAC46                       --------->ATERF1(1)                              ------>NtERF2                      <---------ATERF1(1)                              --------->DEAR3(1) <---------ARR11(3)  <---------ARR14(2)             <------------CBF   <---------ALFIN1 --------->ARR11(3)  --------->ARR14(2)         >>>>>>>>>TBF1         --------->MYB46(3)          --- ---------RVE1(1)  ----------->ARR10         >>>>>>>>>TBF1     <---------ANAC46                ------   agagattttagggaaatagagaagagccgccattgatcaatgtcgaagaagaagaattgaagatggtgttgagccaccccattggagagagagagagaga  10604600                                                                                                   --                                                                                                <----                                                                                              -------                                                            --------->MYB52(1)                -------                                                          --------->ANAC58                    -------                                                          <---------MYB52(2)                  <------                     <---------ARR14(2)          --------->ALFIN1                          --------->TCP20                  <------NtERF2                ===============================================bZIP_DOF        <---------HSFB2a(2)                    <---------TGA1a           <---------AHL20(2)--------->PCF5     --------->GLK1(2)                    <-------TEIL    --------->ANAC58       <-----------------AGL3 -------->GT1   <---------DEAR3(1)   --------->LBD16 ----------->HVH21  --------->AHL20(2) <---------PCF2 --->CCA1(2)   <------ZmHOX2a(1)    <---------LBD16  <----------ARF1----------->GT1<----------DOF2 --   cggagaaattctcgagaggaggcgatttgggcaaaaacccagggttcagacttgggggacacgaacggggtcgataaaattgggccttttatgggcccgt  10604700       -------->ATHB1       <---------ICU4       --------->YAB1       --------->ATHB12      <---------YAB1      <---------ATHB12      --------->ICU4   <---------AHL20(2)                                                          <---------ANAC55(2) --------->GT1           ----------->RAV1(1)                   <----------DOF2 --------->ANAC58 -----MYB52(1)      <---------At4g35610                      <<<<<<<<<<AtSR1   --------->ANAC58 -->ANAC55(2)       --------->At4g35610                      --------->LBD16  <---------LBD16 -->ANAC58       ---------->DOF2                           <---------LBD16 <-----------HVH21 -->ANAC58     ----------->HVH21                    --------->DAG2   <-----------GT1          ------- ---ANAC55(2)--------->At4g35610                   ---------->DOF2  <-----------GT1           <------NtERF2 ------->ICU4<---------At4g35610                 ----------------------->TaNAC69(2)       --------->ANAC46   aatgtttaatcattgggctgaaagctgcaacatagtagcccaatttcaactcgtaaagttttccgcgttttttcccctatcacggacaaaacaggcagcc  10604800                                                              --------->ETT(2)                                                              <---------MYB46(3)                                                           <---------MYB46(3)                                                          <---------AtMYB61                                                --------->ANAC58                                                <---------ANAC55(2)                                                --------->ANAC55(1)                         ---------                         <----------ID1         --------->ANAC55(2)                  ---------->DOF2         ----------->GT1 ----------->GT1        --------->ANAC58              --------->ANAC58 -->At4g35610   ---------->DOF2 --------->AHL20(2)       <---------MYB52(1)   --------->ANAC58   ctattgacaacttgtttaaaaagaagaaggaaaaaaaaatccatatagagacgtaatccgatggtcgatggagacgttgtaagaaacaaaagaattgtag  10604900                                                                                          --------->ARR14(2)                                                                                          <---------ARR14(2)                                                                                       <---------ANAC46                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                                                                      <-------TEIL                                                                                     <---------ANAC46       --------->At4g35610                                                         <---------ANAC58 -      --------->MYB52(2)                                                           <---------ANAC58 - <XXXXXXXXXXXXXXXXXXXXMIR841B*                                                     <------MYB46(1)  - --------->DAG2                                                                    <------MYB83   <-- <---------TOE2(3)                                          <---------ANAC46      --------->MYB111(1) <---------TOE1(3)  <<<<<<<<<<<<<<<<<LFY              <---------YAB1          --------->ATHB12 ------ -->GT1<---------STY1(2)      <-------TEIL          --------->YAB1        --------->TOE2(3)  --------   aataaggttagctagaaattgtcaacaatgggttcatagaaaaactcgtttgaatcaaaattgtgtctaaacaaaacctttgatttggtgcgtatatgac  10605000  Previous    Next  AGI:  At4g19440.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G22470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63774.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 10600801    to: 10604531    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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