Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <---------ANAC58                                                                <---------ANAC46                                                                <---------ANAC58  ------>ZmHOX2a(1)                                        --------->YAB1 ------>TCP15(1)                                           <---------ICU4 -------PCF2                                               -------->ATHB1 -----TOE1(2)                                              --------->ATHB12 -----MYB46(3)                                            <---------ATHB12                        <-- --->ALFIN1                                            --------->AHL20(2)                         === --ANAC46        --------->AHL20(2)                    <---------AHL20(2)                   --------- --HVH21         <---------AHL20(2)                   --------->AHL20(2)     <-----------RAV1(1)  <--   ggtcctacaaaatttttaaaaaattagacatatgagtaagttttctcatgtccaaaataaatcattgtgtgtccaaattttgttgtccaaatagacacaa  10541100                      --------->ALFIN1                                                     --------->ANAC55(2)                    =====================bZIP_DOF                                          ----------   ----------->GT1  <---------TGA1a   --------->ANAC58                                     <---------ANAC55(2)  <---------TOE2(3) --------->O2      --------->ANAC58                                 xxxxxxxxxxxxxx -------DAG2        <---------ANAC46  --------->AtLEC2                                --------->WOX13(1) =============================bZIP_DOF--------->ANAC46                    --------->ARR14(2)     xxxx >ANAC46  --------->AHL20(2)  <----------DOF2                            <---------GLK1(2)--------->MYB59 --------DOF2       <---------O2  <-----------GT1              <---------LBD16        xxxxxxxxxxxxxxx   ctttatggtatataaaatatagacgtggatgtcttttaacatgcaatcgaacagggactcatttatgggggaacaggttctccataaacaatcaggtaat  10541200                             ----------->RAV1(1)                            <---------MYB55(2)                           ------>MYB83                           -------->P                           ------>MYB46(1)                         --------->MYB46(3)                         <---------MYB55(2)                         --------->DEAR3(1)                         --------->AtMYB61                         <---------MYB111(1)                 <---------YAB1               <---------ICU4--------->TOE2(3)               --------->YAB1------->GAMYB                  <---------AHL20(1)              <---------ATHB12                              --------->AHL20(1) <-------TEIL --------->ICU4--------->MYB46(3)             --------->AHL20(2) ->GT1      --------->YAB1--------->MYB55(1)      --------->TOE1(3)                                -- xxxxxxxx>smallRNA(s2)   <---------MYB111(2)      --------->TOE2(3)                              ---- xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->ANAC58                                  ---- xxxxxxxx>smallRNA(s2)   <---------MYB46(2)    --------->ANAC58<---------AHL20(2)  --------->MYB52(1)   acatacatagactgtaatcatgaaacaccaaccacaaaataagatggataagccttagcaaatatataaacgaagattgaatagcaaacgagaatataac  10541300                                                                                <---------WOX13(1)                              ----------->GT1                                 <---------ICU4  ---------->DOF2    --------->TOE1(3)      --------->HSFB2a(2)               -------->HAHB4 ------->AHL20(2)   ----------->GT1         <---------HSFB2a(2)               --------->ATHB12 ----->TOE1(3)     ------------------------>ANAC81                           <---------YAB1     <---- ----->TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       --------->ICU4     -----   attaaaaagacagactagcagaagcttaaaaacagaaaaacaagttttagaaaaatagaaacatgtagatagacagataatgatggataacacagtatta  10541400                                        --------->ZAT18                                      <---------ZAT18                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                              <---------RVE1(1)                             <---------AGP1                             <---------ARR11(3) --------->CCA1(2)                             --------->ARR11(3)<---------GLK1(2)                             --------->AGP1--------->LBD16                            <---------CCA1(2)  <---------ARR14(2)                           ----------->ARR10 ----------->ARR10                                  -----                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ------->MYC3             --------->ALFIN1              <---------ARR11(3)     <---------ANAC58           --------->O2              <--------P              --------->AHL20(1)     <---------ANAC58           <---------O2             <-------GAMYB       <----------DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------ANAC46     <---------LBD16 -----AHL20(2)<---------AHL20(1)   <---------ANAC46     ------->GAMYB         --------->HSFB2a(2) ---->AHL20(2)--------->ARR11(3)<----------DOF2--------->ARR14(2)<-------MYC3 <---------HSFB2a(2)   aaacattgtctttcaatattttggacaattagatcttttgtgtgcccgagatttgcaacgggagcaacgtggaatactctctcgaactcggggttgagcc  10541500                                                                                   <---------ARR14(2)                                                                                   --------->ARR14(2)                                                                              --------->ANAC58                                                                              -------->P                                                                              --------->ANAC58                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               ------>ZmHOX2a(2)   <---------GLK1(2)                                 ====================================HOX2a_HOX2a  ------>MYB83                    --------->MYB46(3)   --------->DAG2       <------ZmHOX2a(2) <---------MYB59                  ------->TEIL   ------>ZmHOX2a(1)           --------->ARR11(3) ------->GAMYB              --------------->AtSPL8     <---------TOE2(3)   --------->AGP1 --------->MYB46(3)   --------->At4g35610       <-----------HVH21               <---------AGP1--------->At4g35610   <---------At4g35610    ------>ZmHOX2a(1)        --------->YAB1          <---------At4g35610 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------TOE1(3)   <---------ARR11(3)--------->MYB46(3) ---->ZAT18  *TSS<-----------GT1 =====================================HOX2a_HOX2a ------>MYB46(1)   cagtaagctccatctatttgtacccatcctccgtcctctccataaggttccattcataaactagatctatagcattcagcaaccaaattctcgtatgcta  10541600                                                                                                 ----                                                                                            <--------                                                                                            ---------                                                                                         --------->AtMYB61                           ------->MYC3                                                 --------->MYB46(3)                           ------->MYC2       <---------ARR11(3) <---------YAB1       <---------WRKY18(1)                           <-------MYC3     --------->ANAC46   --------->YAB1        --------->WRKY38(1)                           <-------MYC2     --------->ANAC58  ----------->GT1        --------->WRKY12              <---------At4g35610<---------MYB46(3)    ---------->DOF2               --------->WRKY45 <----------DOF2    ---------->DOF2         --------->ANAC58  --------->ICU4  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tttctttgtataatacagcagttaaagcatgtggattgttggcttcaagacattttgtaaagaaatgataatagatggaatgaggcattgaccaccacat  10541700                --------->ANAC58          ------>ZmHOX2a(2)         <------ZmHOX2a(2)        --------->AGP1                                                     --------->TOE2(3)        <---------AGP1                                             ------->GAMYB       <---------GLK1(1)        <---------ARR11(3)                                      --------->MYB52(1)     --------->GLK1(1)        --------->ARR11(3)                                      <-----------GT1    <---------TOE2(3)        --------->ARR14(2)                            --------->RAP2.6(2)  --------->TOE1(3)       <---------GLK1(1)                            <---------At4g35610  ------>MYB46(1)       --------->GLK1(1)               <---------ANAC46    --------->AHL20(2)    ---------->DOF2      ----------->ARR10--------->ANAC46<---------ANAC58    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----->AHL20(2) --------->ANAC58       <---------ANAC58  <----------DOF2 ------>MYB83<------ZmHOX2a(1) -ALFIN1<---------ARR14(2)         xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->RAV1(1) <-----------HVH21    <---------ZAT6     --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   aaaataccgagatctgtcaaggcagacacaacttagtgtttccttggaatagacagccgctttaaataacggaccagccttaacaaaggatttcaaagaa  10541800                                                 <------NtERF2                                                --------->ANAC58                                                --------->ANAC58                                                <---------RAP2.6(3)                                                ------>NtERF2                                               <---------ATERF1(2)                                               --------->ATERF1(2)                                               --------->RAP2.6(2)                                               <---------DEAR3(1)                                              --------->ATERF1(1)                                              --------->SPL7                                             ------>NtERF2                                             <---------ATERF1(1)                                            <---------DEAR3(1)                                            <---------PCF2                                            --------->TCP20                                            <---------PCF5                                            --------->TCP15(1)                                           --------->ATERF1(1)                       --------->MYB52(1)--------->ALFIN1                     <---------MYB52(2) --------->At4g35610                    --------->At4g35610 <---------At4g35610                    <---------At4g35610 <---------LBD16                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->GLK1(2)            --------->ZAT2            --------->LBD16        --------->ARR14(2)          xxxxxxxxxxxxxxxx>smallRNA(i)              ------>ZmHOX2a(1)       <---------GLK1(2)            --------->ANAC58          <---------HSFB2a(2)             -------       --------->ARR14(2)           --------->ANAC46          --------->HSFB2a(2)           ---------       <---------ARR14(2)<---------------AGL15<------NtERF2  <---------LBD16  <-----------RAV1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<---------ZAT2 --------->ANAC58    --------->At4g35610 --------- --------->ANAC46  ------->TEIL     --------->ANAC58--------->ANAC58 --------->At4g35610  --------->MYB52(1)   tcaacaccagattctgcaacgtagctaacaattttagcaagcagcggggccggcaagtaaacttctgggatagcagcatcctgttggaaaaaaaacgaaa  10541900                                                                                           --------->At4g35610                          ----------->GT1                                                  <---------At4g35610                   <---------TOE2(3)                                                     ============                  ---------->DOF2                                                 ----------->RAV1(2)                <---------YAB1                                                *TSS<---------At4g35610 --->DOF2    <---------AHL20(2)                                               <-----------GT1   <---- >ANAC58     <---------YAB1                                           -------->P  --------->At4g35610 >ANAC58    <---------AHL20(2)                      <----------DOF2 --------->MYB46(3)   <-----------RAV1(2)   gagattgttagtatttttattaaagtagtagttaaaactgtagaatactaagtactttgggtttggacgaacaaccattttcacatctgaggcagatgat  10542000  Previous    Next  AGI:  At4g19280.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35080.1) Range:  from: 10540051    to: 10541513    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g19290.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36060.1) Range:  from: 10541554    to: 10541978    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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