Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------HSFB2a(2)     ==============================HOX2a_HOX2a                         --------->LBD16         ------>ZmHOX2a(2)                         --------->HSFB2a(2)   --------->ARR11(3)          --------->ALFIN1                       ------>ZmHOX2a(2)     <---------YAB1                <---------ZAT6                      --------->CCA1(2)    --------->YAB1               <------ZmHOX2a(1)        <---                      <------ZmHOX2a(2)   <---------YAB1             <-----------RAV1(2)         ----                     --------->ARR14(2) --------->CCA1(2)       --------->YAB1                   <---             --------->YAB1     --------->MYB52(1) <---------YAB1<-----------HVH21               ---- ---->ARR14(2)       <---------ARR14(2)--------->ARR14(2)     --------->ANAC58            ---------->DOF2 -----ARR14(2)       --------->AGP1    <---------ARR11(3)     --------->ANAC58       ---------->DOF2   tatggagtctgaaaatcgtaatagatccgagaagaaaccgagatatgatgatcgtgattctgagaagcatcacaggagtgtgaagggcaaagaaaagcat  10495800                    ------>ZmHOX2a(1)                  ------>ZmHOX2a(2)                --------->ARR11(3)                                   <---------LBD16                <---------ARR14(2)                            --------->GLK1(2)        --------->GLK1(2)               <-------TEIL          ------->TEIL ----MYC2       <---------ARR11(3)     --------->CCA1(2)      <---------ARR14(2) --->MYC3     <---------YAB1          <---------ARR14(2)      --------->ARR14(2) ----MYC3--------->At4g35610          --------->ARR14(2)     <---------GLK1(2) --->MYC2<---------At4g35610    ----------->HVH21 ---------->DOF2<---------YAB1             ---------   gtgtatgaagcatctgatgatcctgaagagttttctgacagatacagaagcacaaagaaaactgaatctgattcggaatcaaaccgtagaagtagaaaga  10495900                                                      <---------ZAT14                              <-                                                      --------->ZAT14                              --                                                   ---------->DOF2                                 --                        >>>>>>>>>TBF1     --------->ANAC58             --------->GLK1(2)    <--------                     >>>>>>>>>TBF1        --------->ANAC58         <------ZmHOX2a(1)     ------------ ->DOF2          --------->LBD16      <---------ANAC55(2)         ----------->GT1       <-----------HVH21   agaagcatgagttgtcttccgaagaagaagaaggggagtctcgtaagcatcgatacagcactaatagaaggagaaactgagtctatgctatgtcaattgt  10496000                --------->ARR14(2)             <---------TOE2(3) --------HSFB2a(2)                      <---------ARR11(3)>>>>>>>>>ARR1                        ------ ---->ZmHOX2a(1)<---------ARR14(2)      --------->ARR11(3)>>>>>>>>>ARR2                      <------- ------->HSFB2a(2)<---------LBD16   <---------ANAC58      <------------CBF                 <--------- ----CBF     <---------YAB1         <---------ANAC58    <---------YAB1           <---------ZAT14   -- >CBF        <---------TOE1(3)  <------------CBF   <---------------AtSPL3        --------->ZAT14   --   cctggaccaagagttatggttccggtctgaatgagattgcgagataatgtagtaatgtacgattgttttttttttggtctatgtatactgggtttataaa  10496100                                                                                                    -                                                                                                    -                                  --------->DAG2                                                    -                        <---------YAB1                          --------->MYB52(1)             <----- ---->DOF2            <-----------GT1                   <-------TEIL                  <-----------GT1 --YAB1              --------->AHL20(2)              <---------ANAC46          <---------ZAT18<------ --TBP               <---------AHL20(2)              <---------ANAC58          <-------TEIL   <------ ------->TOE1(3)     <---------YAB1          ---------->DOF2<------ZmHOX2a(1)  --------->ABI4(2)   <- ------->TOE2(3)  <----------DOF2---------->DOF2     <---------ANAC58    --------->MYB52(1)<---------MYB52(1)   agcttaatgagtccatgactctttttattattcgataaagctaaaaaaaaagattacgttcaggaacaacgaataaaacggtgcattttaactgttactt  10496200                                                                  --------->GLK1(1)                                                                  <---------CCA1(2)                                                                  <---------GLK1(1)                                                              ----------->GT1      <------ZmHOX2a(1)                                  <----------DOF2   <-----------RAV1(2)                                ------>NtERF2 ------>NtERF2                                       <---------DEAR3(1)                   <---------ANAC58 -------->ANAC58                                   --------->MYB52(1)              <-------GAMYB -------->ANAC46                                  --------->At1g77200    <---------GLK1(2)<---------ANAC46 -------->ANAC58                                  --------->DEAR3(1) <---------LBD16<---------MYB52(1) -----DOF2                                        ----------->HVH21--------->ARR14(2)     <---------ANAC58 ---ANAC58 <------------CBF                      --------->DEAR3(2)<---------ARR14(2)    --------->ATHB12 ---ANAC58--------->ATHB12               ------>ZmHOX2a(1)    <---------ANAC46    <---------MYB46(3) --------LBD16                 --------->GLK1(2)<---------At5g28300--------->ARR11(3)   <---------YAB1   tcccgccaggagtcattggagagcaagtgagaaaatccatgtccttgattcaccgacggctatatcgtatatctggattatcgtctgttaatgcttggaa  10496300                                                                                                    <                --------->At5g28300                                   --------->LBD16               -               ----------->GT1                                      <---------LBD16             <----               <---------MYB46(3)                                   --------->ZAT18        <---------            ------------>MYB.PH3(1)                            ---------->DOF2       ------>MYB83   -          ---------->DOF2                               --------->HSFC1(1)         <---------MYB59  <        <---------HSFB2a(2)                             <---------HSFC1(1)        --------->DEAR3(2)<      <-------TEIL                                      --------->HSFB2a(2)--------->ARR14(2)   <----     --------->CCA1(2)           --------->LBD16        <---------HSFB2a(2)<---------ARR14(2)<-------    --------->ARR14(2)         <---------LBD16         <---------ANAC46   <------ZmHOX2a(1)<---------DAG2    --------->ARR11(1)         ------>ZmHOX2a(2)  ===================================================    <---------ARR14(2)        --------->ARR14(1)  <---------------AGL15<------NtERF2 ------>MYB46(1)-   tttgcagatacgagaagcggttaatagaaatgatccggtggaatcacttcttctgtttcgagaaatgaagcgcggaggatttgaaccgaacaactttact  10496400                   --------->ZAT18                  --------->ALFIN1                <---------ANAC58              <-----------HVH21     <-----------RAV1(1)                     <---------ANAC46 --------------->AGL15                     <---------ZAT2 <---------------AGL15                     <---------ZAT14 -----------------AGL2                     --------->At4g35610 ---------------->AGL3                     <---------At4g35610 ------DOF2     <---------ANAC46        <---------ANAC58                                            < -DOF2          <---------ANAC58        <------MYB46(1)                                           --- ---------------->AG                    <------MYB83                                              <-- -----------------AGL1                  <---------ANAC58                                          --- -----------------AGL3                  <---------ANAC46                                      ------- -----DAG2  --------->ATERF1(1)        <---------MYB46(3)     ------->TEIL          <---------AtMYB61 ----GT1  <---------ANAC46             --------->MYB55(2)  --------->AtLEC2      <---------MYB52(1)<- =================MADS_MADS        <-----------RAV1(1)  <-------TEIL    --------->DAG2      <-------- ---------------->AGL1        <---------At4g35610    <---------MYB46(3)---------->DOF2   ----------->HVH21   tttccatttgtggcgaaggcgtgtgctaggctcgctgatgttgggtgctgtgagatggttcatgcacatttgataaagtctccgttttggtctgatgtgt  10496500              <-------GAMYB             <---------DEAR3(2)             <---------MYB46(3)                       <------NtERF2         ----------->HVH21                           <---------RAP2.6(3)   ----------->HVH21                                 ------>NtERF2 ---------MYB52(1)                                  --------->DEAR3(1) ------>MYB52(2)                                    <---------ATERF1(2) -------MYB46(3)                                    --------->ATERF1(2) ------>MYB55(2)----------->HVH21                   --------->RAP2.3(3)                             - -->ALFIN1------------>AtMYB77                      --------->RAP2.3(2)                       ------- ------GAMYB<---------DEAR3(1)          <---------ANAC46    --------->ALFIN1               <---------ALFIN1 -ANAC46 --------->DEAR3(1)     ----------->GT1     --------->RAP2.6(2)            --------->CCA1(2)-   tcgttgggacagcgacggttgacatgtttgtgaaatgtaattctgtggattatgccgccaaggtgtttgagagaatgcctgagagagatgctaccacttg  10496600                                                          <---------ANAC58                                            <---------ANAC58                                   --------->ANAC58       ----------->GT1                                   --------->ANAC58       <---------ANAC46                                   --------->ANAC55(1)    <---------ANAC58                                  <---------LBD16 <-----------GT1                                   <                              ----------->HVH21<---------ARR14(2)                              ------ -------->ANAC58             <-----------HVH21 --------->ARR14(2)                        <---------GLK1(2) -------------->WRI1 <---------MYB52(1)     <---------ANAC58                         <---------At4g35610 -------->ANAC58    <-----------HVH21    --------->DAG2   <---------ANAC55(2)        ----------->RAV1(2)   gaacgcaatgctgtctggtttctgtcagtcgggtcacacggataaggcgttttctctatttcgtgaaatgagactcaacgagattacacctgattctgtg  10496700  Previous    Next  AGI:  At4g19190.1    Description:  zinc knuckle (CCHC-type) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO63734.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) Range:  from: 10493258    to: 10496171    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g19191.1    Description:  similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71781.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65709.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 10496239    to: 10498203    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version